Wall clock time and date at job start Tue Mar 31 2020 08:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.48654 * 2 1 4 4 C 1.53105 * 109.47965 * 240.05298 * 2 1 3 5 5 C 1.53184 * 109.15760 * 182.49855 * 4 2 1 6 6 H 1.09000 * 109.54299 * 296.94100 * 5 4 2 7 7 C 1.53002 * 109.54306 * 176.76208 * 5 4 2 8 8 N 1.46502 * 109.46735 * 175.18259 * 7 5 4 9 9 C 1.36938 * 120.00273 * 90.00091 * 8 7 5 10 10 H 1.07998 * 119.99516 * 217.03218 * 9 8 7 11 11 C 1.38808 * 119.99826 * 37.02626 * 9 8 7 12 12 N 1.31626 * 119.99436 * 201.52309 * 11 9 8 13 13 Si 1.86793 * 120.00356 * 21.52369 * 11 9 8 14 14 H 1.48503 * 109.46928 * 264.67427 * 13 11 9 15 15 H 1.48500 * 109.47217 * 24.66987 * 13 11 9 16 16 H 1.48507 * 109.47264 * 144.67467 * 13 11 9 17 17 C 1.46500 * 119.99681 * 269.99749 * 8 7 5 18 18 C 1.50702 * 109.46969 * 274.73533 * 17 8 7 19 19 C 1.38236 * 119.99666 * 265.12784 * 18 17 8 20 20 C 1.38237 * 119.99709 * 179.78913 * 19 18 17 21 21 C 1.38232 * 120.00128 * 0.44241 * 20 19 18 22 22 C 1.38235 * 119.99895 * 359.80923 * 21 20 19 23 23 C 1.38232 * 120.00315 * 85.40454 * 18 17 8 24 24 C 1.53175 * 109.10559 * 56.84999 * 5 4 2 25 25 C 1.53095 * 109.16476 * 303.06242 * 24 5 4 26 26 O 1.42902 * 109.41280 * 57.61361 * 25 24 5 27 27 H 1.09000 * 109.46932 * 299.98053 * 1 2 3 28 28 H 1.09005 * 109.46656 * 59.97490 * 1 2 3 29 29 H 1.08991 * 109.47749 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47504 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46710 * 300.02827 * 3 2 1 32 32 H 1.09005 * 109.46923 * 60.02297 * 3 2 1 33 33 H 1.09001 * 109.59632 * 62.55507 * 4 2 1 34 34 H 1.08997 * 109.45923 * 302.36290 * 4 2 1 35 35 H 1.08995 * 109.47242 * 55.17578 * 7 5 4 36 36 H 1.09008 * 109.46905 * 295.17519 * 7 5 4 37 37 H 0.96997 * 119.99704 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.47265 * 34.73026 * 17 8 7 39 39 H 1.08999 * 109.47271 * 154.73365 * 17 8 7 40 40 H 1.07993 * 120.00473 * 359.97438 * 19 18 17 41 41 H 1.08003 * 120.00079 * 180.28171 * 20 19 18 42 42 H 1.07999 * 119.99822 * 179.84032 * 21 20 19 43 43 H 1.08000 * 119.99678 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00210 * 359.97438 * 23 18 17 45 45 H 1.09005 * 109.52492 * 62.97390 * 24 5 4 46 46 H 1.09006 * 109.52339 * 183.15829 * 24 5 4 47 47 H 1.09003 * 109.47912 * 177.58927 * 25 24 5 48 48 H 1.08991 * 109.48155 * 297.63051 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0406 -0.7205 -1.2507 5 6 3.5711 -0.7711 -1.2121 6 1 3.9703 0.2427 -1.2416 7 6 4.0876 -1.5598 -2.4172 8 7 5.5516 -1.5100 -2.4422 9 6 6.2806 -2.4694 -1.7915 10 1 7.1973 -2.2015 -1.2874 11 6 5.8412 -3.7860 -1.7799 12 7 6.2637 -4.6125 -0.8468 13 14 4.6502 -4.3848 -3.0885 14 1 3.2610 -4.2962 -2.5712 15 1 4.7815 -3.5387 -4.3018 16 1 4.9612 -5.7956 -3.4326 17 6 6.2356 -0.4338 -3.1634 18 6 6.3732 -0.8109 -4.6159 19 6 7.5352 -1.4081 -5.0678 20 6 7.6598 -1.7580 -6.3993 21 6 6.6261 -1.5024 -7.2808 22 6 5.4662 -0.9005 -6.8299 23 6 5.3399 -0.5544 -5.4976 24 6 4.0175 -1.4603 0.0809 25 6 3.4307 -0.7093 1.2791 26 8 2.0065 -0.6742 1.1664 27 1 -0.3633 0.5135 0.8902 28 1 -0.3633 0.5143 -0.8898 29 1 -0.3634 -1.0275 -0.0005 30 1 3.1303 1.4421 -0.0005 31 1 1.6767 1.9563 -0.8898 32 1 1.6775 1.9561 0.8902 33 1 1.7163 -0.1818 -2.1410 34 1 1.6430 -1.7352 -1.2729 35 1 3.6933 -1.1219 -3.3341 36 1 3.7607 -2.5969 -2.3399 37 1 5.9570 -5.5327 -0.8388 38 1 5.6555 0.4853 -3.0801 39 1 7.2249 -0.2793 -2.7327 40 1 8.3444 -1.6040 -4.3800 41 1 8.5658 -2.2287 -6.7515 42 1 6.7245 -1.7734 -8.3216 43 1 4.6585 -0.7011 -7.5186 44 1 4.4337 -0.0842 -5.1454 45 1 3.6612 -2.4904 0.0865 46 1 5.1058 -1.4501 0.1422 47 1 3.7099 -1.2203 2.2005 48 1 3.8192 0.3088 1.2957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207360091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:02 Heat of formation + Delta-G solvation = -10.322257 kcal Electronic energy + Delta-G solvation = -26344.787540 eV Core-core repulsion = 22978.790927 eV Total energy + Delta-G solvation = -3365.996613 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.70776 -38.72886 -36.29810 -33.44809 -32.96220 -32.03237 -30.40463 -30.28243 -28.27162 -27.16849 -26.12684 -25.50722 -23.00096 -22.02069 -22.00971 -20.81610 -19.85331 -18.71432 -16.82806 -16.28218 -15.88560 -15.66433 -15.05429 -14.74483 -14.54671 -14.45594 -14.27634 -14.02719 -13.39305 -13.02657 -12.95781 -12.78190 -12.56461 -12.33200 -12.18567 -12.10438 -11.96972 -11.94110 -11.62559 -11.22593 -11.16867 -10.93030 -10.75974 -10.71260 -10.66349 -10.49560 -10.31211 -10.04281 -9.68861 -9.61383 -9.36287 -8.94488 -8.57703 -8.41728 -8.16909 -6.89085 -6.03460 -3.42791 1.88474 1.91203 3.30192 3.47239 3.55942 4.10449 4.27190 4.51158 4.87234 5.04131 5.14952 5.24423 5.30154 5.32815 5.35926 5.38797 5.49469 5.61985 5.63915 5.71158 5.76298 5.82024 5.84920 5.85205 5.91804 5.93790 6.02845 6.03465 6.09847 6.15911 6.19152 6.29621 6.36350 6.43138 6.49930 6.55851 6.58864 6.60290 6.68271 6.80568 6.94265 6.98687 7.06832 7.27083 7.29638 7.53959 7.70105 8.00898 8.31355 8.92840 9.66965 10.06458 11.11258 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.005373 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.636333 B = 5209.964026 C = 6085.340242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.113 3.887 3 C -0.176 4.176 4 C -0.139 4.139 5 C -0.100 4.100 6 H 0.064 0.936 7 C 0.144 3.856 8 N -0.592 5.592 9 C -0.262 4.262 10 H 0.081 0.919 11 C 0.045 3.955 12 N -0.895 5.895 13 Si 0.868 3.132 14 H -0.287 1.287 15 H -0.264 1.264 16 H -0.305 1.305 17 C 0.179 3.821 18 C -0.080 4.080 19 C -0.102 4.102 20 C -0.125 4.125 21 C -0.141 4.141 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.133 4.133 25 C 0.058 3.942 26 O -0.381 6.381 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.263 0.737 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 10.813 -4.051 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.074 3.926 3 C -0.234 4.234 4 C -0.177 4.177 5 C -0.120 4.120 6 H 0.082 0.918 7 C 0.018 3.982 8 N -0.312 5.312 9 C -0.390 4.390 10 H 0.098 0.902 11 C -0.157 4.157 12 N -0.536 5.536 13 Si 0.699 3.301 14 H -0.215 1.215 15 H -0.188 1.188 16 H -0.233 1.233 17 C 0.053 3.947 18 C -0.084 4.084 19 C -0.121 4.121 20 C -0.143 4.143 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.139 4.139 24 C -0.170 4.170 25 C -0.019 4.019 26 O -0.301 6.301 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.104 0.896 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.885 10.555 -3.803 12.669 hybrid contribution -0.554 -0.702 -1.116 1.430 sum -6.439 9.853 -4.919 12.757 Atomic orbital electron populations 1.21746 0.93287 1.02521 1.01802 1.21377 0.93969 0.91040 0.86242 1.22425 1.02468 0.96613 1.01853 1.22237 0.97468 1.00972 0.97040 1.21726 0.92618 0.99840 0.97846 0.91815 1.21182 0.84390 0.98418 0.94191 1.44208 1.00198 1.29732 1.57108 1.18704 1.08296 0.86255 1.25774 0.90156 1.25386 0.97697 0.95865 0.96703 1.69835 1.46045 1.06029 1.31648 0.87074 0.80549 0.77410 0.85080 1.21537 1.18819 1.23296 1.20046 0.97638 0.91075 0.85928 1.21074 0.92963 0.96555 0.97763 1.21072 0.98076 0.98011 0.94979 1.21089 0.98662 1.00461 0.94103 1.20935 0.94516 1.01437 0.99050 1.20998 0.97518 1.00182 0.95893 1.20969 0.98453 1.01247 0.93186 1.22071 1.03394 0.99131 0.92414 1.22709 0.80327 0.99265 0.99553 1.87891 1.21982 1.77488 1.42718 0.92273 0.91546 0.92037 0.91504 0.92000 0.92472 0.91844 0.91594 0.94453 0.92930 0.92727 0.93542 0.91773 0.86147 0.86915 0.87172 0.87166 0.87082 0.91823 0.88299 0.89615 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.85 37.16 0.33 -1.33 16 2 C 0.11 1.63 1.11 -90.57 -0.10 1.53 16 3 C -0.18 -2.21 7.93 37.16 0.29 -1.92 16 4 C -0.14 -2.19 4.21 -26.58 -0.11 -2.30 16 5 C -0.10 -1.78 2.17 -90.43 -0.20 -1.97 16 6 H 0.06 1.08 6.62 -51.93 -0.34 0.74 16 7 C 0.14 2.94 4.03 -4.04 -0.02 2.93 16 8 N -0.59 -12.84 1.96 -174.61 -0.34 -13.19 16 9 C -0.26 -6.70 7.95 -15.06 -0.12 -6.82 16 10 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 11 C 0.04 1.23 5.32 -17.43 -0.09 1.14 16 12 N -0.90 -26.13 13.97 55.49 0.78 -25.36 16 13 Si 0.87 22.24 24.96 -169.99 -4.24 18.00 16 14 H -0.29 -7.25 6.68 56.52 0.38 -6.87 16 15 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 17 C 0.18 3.33 5.80 -5.19 -0.03 3.30 16 18 C -0.08 -1.49 5.46 -104.62 -0.57 -2.06 16 19 C -0.10 -1.86 9.68 -39.58 -0.38 -2.24 16 20 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 21 C -0.14 -2.19 10.05 -39.58 -0.40 -2.58 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 23 C -0.12 -2.06 9.35 -39.59 -0.37 -2.43 16 24 C -0.13 -2.58 4.88 -26.59 -0.13 -2.71 16 25 C 0.06 0.96 6.52 37.21 0.24 1.20 16 26 O -0.38 -6.45 10.24 -35.23 -0.36 -6.81 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.89 4.98 -51.93 -0.26 0.63 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.04 0.71 7.07 -51.93 -0.37 0.35 16 36 H 0.05 1.23 3.13 -51.92 -0.16 1.07 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.06 1.18 7.91 -51.93 -0.41 0.77 16 40 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.74 7.46 -52.49 -0.39 1.35 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.10 2.16 6.59 -51.93 -0.34 1.82 16 47 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.04 0.67 6.34 -51.93 -0.33 0.34 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -29.03 365.46 -9.22 -38.25 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.10 Total: 4.71 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.45 Total: -21.12 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.43 Total: -38.54 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.36 Total: -6.81 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.24 Total: 18.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.03 -9.22 -38.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207360091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.928 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds