Wall clock time and date at job start Tue Mar 31 2020 08:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.48654 * 2 1 4 4 C 1.53105 * 109.47965 * 240.05298 * 2 1 3 5 5 C 1.53184 * 109.15760 * 182.49855 * 4 2 1 6 6 H 1.09000 * 109.54299 * 296.94100 * 5 4 2 7 7 C 1.53002 * 109.54306 * 176.76208 * 5 4 2 8 8 N 1.46502 * 109.46735 * 175.18259 * 7 5 4 9 9 C 1.36938 * 120.00273 * 90.00091 * 8 7 5 10 10 H 1.07998 * 119.99516 * 217.03218 * 9 8 7 11 11 C 1.38808 * 119.99826 * 37.02626 * 9 8 7 12 12 N 1.31626 * 119.99436 * 201.52309 * 11 9 8 13 13 Si 1.86793 * 120.00356 * 21.52369 * 11 9 8 14 14 H 1.48503 * 109.46928 * 264.67427 * 13 11 9 15 15 H 1.48500 * 109.47217 * 24.66987 * 13 11 9 16 16 H 1.48507 * 109.47264 * 144.67467 * 13 11 9 17 17 C 1.46500 * 119.99681 * 269.99749 * 8 7 5 18 18 C 1.50702 * 109.46969 * 274.73533 * 17 8 7 19 19 C 1.38236 * 119.99666 * 265.12784 * 18 17 8 20 20 C 1.38237 * 119.99709 * 179.78913 * 19 18 17 21 21 C 1.38232 * 120.00128 * 0.44241 * 20 19 18 22 22 C 1.38235 * 119.99895 * 359.80923 * 21 20 19 23 23 C 1.38232 * 120.00315 * 85.40454 * 18 17 8 24 24 C 1.53175 * 109.10559 * 56.84999 * 5 4 2 25 25 C 1.53095 * 109.16476 * 303.06242 * 24 5 4 26 26 O 1.42902 * 109.41280 * 57.61361 * 25 24 5 27 27 H 1.09000 * 109.46932 * 299.98053 * 1 2 3 28 28 H 1.09005 * 109.46656 * 59.97490 * 1 2 3 29 29 H 1.08991 * 109.47749 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47504 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46710 * 300.02827 * 3 2 1 32 32 H 1.09005 * 109.46923 * 60.02297 * 3 2 1 33 33 H 1.09001 * 109.59632 * 62.55507 * 4 2 1 34 34 H 1.08997 * 109.45923 * 302.36290 * 4 2 1 35 35 H 1.08995 * 109.47242 * 55.17578 * 7 5 4 36 36 H 1.09008 * 109.46905 * 295.17519 * 7 5 4 37 37 H 0.96997 * 119.99704 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.47265 * 34.73026 * 17 8 7 39 39 H 1.08999 * 109.47271 * 154.73365 * 17 8 7 40 40 H 1.07993 * 120.00473 * 359.97438 * 19 18 17 41 41 H 1.08003 * 120.00079 * 180.28171 * 20 19 18 42 42 H 1.07999 * 119.99822 * 179.84032 * 21 20 19 43 43 H 1.08000 * 119.99678 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00210 * 359.97438 * 23 18 17 45 45 H 1.09005 * 109.52492 * 62.97390 * 24 5 4 46 46 H 1.09006 * 109.52339 * 183.15829 * 24 5 4 47 47 H 1.09003 * 109.47912 * 177.58927 * 25 24 5 48 48 H 1.08991 * 109.48155 * 297.63051 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0406 -0.7205 -1.2507 5 6 3.5711 -0.7711 -1.2121 6 1 3.9703 0.2427 -1.2416 7 6 4.0876 -1.5598 -2.4172 8 7 5.5516 -1.5100 -2.4422 9 6 6.2806 -2.4694 -1.7915 10 1 7.1973 -2.2015 -1.2874 11 6 5.8412 -3.7860 -1.7799 12 7 6.2637 -4.6125 -0.8468 13 14 4.6502 -4.3848 -3.0885 14 1 3.2610 -4.2962 -2.5712 15 1 4.7815 -3.5387 -4.3018 16 1 4.9612 -5.7956 -3.4326 17 6 6.2356 -0.4338 -3.1634 18 6 6.3732 -0.8109 -4.6159 19 6 7.5352 -1.4081 -5.0678 20 6 7.6598 -1.7580 -6.3993 21 6 6.6261 -1.5024 -7.2808 22 6 5.4662 -0.9005 -6.8299 23 6 5.3399 -0.5544 -5.4976 24 6 4.0175 -1.4603 0.0809 25 6 3.4307 -0.7093 1.2791 26 8 2.0065 -0.6742 1.1664 27 1 -0.3633 0.5135 0.8902 28 1 -0.3633 0.5143 -0.8898 29 1 -0.3634 -1.0275 -0.0005 30 1 3.1303 1.4421 -0.0005 31 1 1.6767 1.9563 -0.8898 32 1 1.6775 1.9561 0.8902 33 1 1.7163 -0.1818 -2.1410 34 1 1.6430 -1.7352 -1.2729 35 1 3.6933 -1.1219 -3.3341 36 1 3.7607 -2.5969 -2.3399 37 1 5.9570 -5.5327 -0.8388 38 1 5.6555 0.4853 -3.0801 39 1 7.2249 -0.2793 -2.7327 40 1 8.3444 -1.6040 -4.3800 41 1 8.5658 -2.2287 -6.7515 42 1 6.7245 -1.7734 -8.3216 43 1 4.6585 -0.7011 -7.5186 44 1 4.4337 -0.0842 -5.1454 45 1 3.6612 -2.4904 0.0865 46 1 5.1058 -1.4501 0.1422 47 1 3.7099 -1.2203 2.2005 48 1 3.8192 0.3088 1.2957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207360091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:01 Heat of formation + Delta-G solvation = -25.028277 kcal Electronic energy + Delta-G solvation = -26345.425241 eV Core-core repulsion = 22978.790927 eV Total energy + Delta-G solvation = -3366.634314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01971 -40.04036 -37.90638 -34.80711 -34.27948 -33.93332 -31.84254 -31.66331 -29.64494 -28.17322 -27.56988 -27.20323 -24.44086 -23.62918 -23.30335 -22.16960 -21.35995 -20.03554 -18.73525 -17.60869 -17.34108 -17.06009 -16.56455 -16.17712 -15.93854 -15.85501 -15.74106 -15.33074 -15.00003 -14.49337 -14.37973 -14.15824 -14.08484 -13.89880 -13.67439 -13.33017 -13.20417 -12.97025 -12.91154 -12.77187 -12.53402 -12.44180 -12.27303 -12.26613 -12.05451 -11.96070 -11.80328 -11.67732 -11.41924 -11.17821 -10.83801 -10.61607 -10.27823 -9.70311 -9.51990 -8.73966 -8.17500 -5.50130 0.59144 0.61866 1.23369 1.35801 1.45993 2.40910 2.91022 2.93936 3.10325 3.53291 3.86881 3.92614 3.95202 4.07696 4.08550 4.17158 4.25966 4.28699 4.33924 4.41208 4.52233 4.53951 4.61526 4.66526 4.72359 4.74937 4.75281 4.85102 4.86948 4.90430 4.95589 4.96777 5.05497 5.12043 5.15013 5.26614 5.27490 5.29728 5.31576 5.45223 5.56027 5.66470 5.67719 5.69907 5.88136 6.01004 6.19847 6.26898 6.44458 7.01371 7.66712 8.08481 9.01841 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.005373 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.636333 B = 5209.964026 C = 6085.340242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.104 3.896 3 C -0.171 4.171 4 C -0.135 4.135 5 C -0.091 4.091 6 H 0.082 0.918 7 C 0.141 3.859 8 N -0.600 5.600 9 C -0.226 4.226 10 H 0.050 0.950 11 C -0.003 4.003 12 N -0.942 5.942 13 Si 0.921 3.079 14 H -0.287 1.287 15 H -0.261 1.261 16 H -0.321 1.321 17 C 0.181 3.819 18 C -0.101 4.101 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.124 4.124 25 C 0.066 3.934 26 O -0.397 6.397 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.022 0.978 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.127 0.873 45 H 0.022 0.978 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 13.607 -6.336 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.065 3.935 3 C -0.228 4.228 4 C -0.173 4.173 5 C -0.112 4.112 6 H 0.100 0.900 7 C 0.016 3.984 8 N -0.321 5.321 9 C -0.356 4.356 10 H 0.068 0.932 11 C -0.200 4.200 12 N -0.587 5.587 13 Si 0.753 3.247 14 H -0.215 1.215 15 H -0.185 1.185 16 H -0.251 1.251 17 C 0.056 3.944 18 C -0.104 4.104 19 C -0.146 4.146 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.162 4.162 25 C -0.010 4.010 26 O -0.317 6.317 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.127 0.873 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.145 0.855 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.869 13.396 -6.123 16.699 hybrid contribution 0.113 -1.446 -0.481 1.528 sum -7.756 11.950 -6.604 15.702 Atomic orbital electron populations 1.21769 0.91342 1.02429 1.03539 1.21678 0.95491 0.91840 0.84484 1.22379 1.01803 0.95143 1.03506 1.22230 0.95334 1.00511 0.99264 1.21621 0.94462 0.99744 0.95355 0.90025 1.21231 0.83494 0.97269 0.96358 1.44229 1.00770 1.29277 1.57849 1.18511 1.06638 0.86658 1.23809 0.93227 1.25757 0.99660 0.96376 0.98209 1.69942 1.48885 1.06141 1.33740 0.86215 0.79266 0.75823 0.83383 1.21525 1.18493 1.25130 1.20078 0.97443 0.90713 0.86150 1.21019 0.93914 0.97801 0.97655 1.21198 0.98196 0.99130 0.96058 1.21393 1.00035 1.00275 0.93499 1.21377 0.93857 1.00085 1.00463 1.21420 0.98445 0.99122 0.95851 1.21224 0.98469 1.01286 0.93772 1.21892 1.01314 0.97640 0.95373 1.22575 0.80624 0.99819 0.98002 1.87886 1.21517 1.78242 1.44049 0.91373 0.88983 0.93107 0.92434 0.89726 0.91532 0.88994 0.93802 0.92212 0.95982 0.93379 0.90773 0.92498 0.87290 0.84959 0.84029 0.84062 0.85479 0.95892 0.91473 0.89661 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.85 71.98 0.64 -2.19 16 2 C 0.10 2.72 1.11 -10.76 -0.01 2.71 16 3 C -0.17 -3.62 7.93 71.98 0.57 -3.05 16 4 C -0.14 -3.95 4.21 30.69 0.13 -3.82 16 5 C -0.09 -3.15 2.17 -10.67 -0.02 -3.17 16 6 H 0.08 2.55 6.62 -2.39 -0.02 2.53 16 7 C 0.14 5.65 4.03 86.38 0.35 6.00 16 8 N -0.60 -25.99 1.96 -706.33 -1.39 -27.38 16 9 C -0.23 -11.99 7.95 84.03 0.67 -11.32 16 10 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 11 C 0.00 -0.19 5.32 84.86 0.45 0.26 16 12 N -0.94 -58.06 13.97 21.65 0.30 -57.76 16 13 Si 0.92 47.63 24.96 68.60 1.71 49.35 16 14 H -0.29 -14.59 6.68 99.48 0.66 -13.93 16 15 H -0.26 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.32 -17.30 7.11 99.48 0.71 -16.59 16 17 C 0.18 6.56 5.80 85.63 0.50 7.05 16 18 C -0.10 -3.59 5.46 -19.87 -0.11 -3.70 16 19 C -0.13 -4.54 9.68 22.27 0.22 -4.32 16 20 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 21 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 22 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 23 C -0.13 -4.02 9.35 22.27 0.21 -3.81 16 24 C -0.12 -4.97 4.88 30.68 0.15 -4.82 16 25 C 0.07 2.18 6.52 72.01 0.47 2.65 16 26 O -0.40 -12.98 10.24 -148.98 -1.53 -14.50 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.32 4.98 -2.39 -0.01 1.31 16 31 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 2.11 7.07 -2.39 -0.02 2.10 16 36 H 0.02 1.04 3.13 -2.38 -0.01 1.03 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 39 H 0.06 2.11 7.91 -2.39 -0.02 2.09 16 40 H 0.11 4.00 8.06 -2.91 -0.02 3.97 16 41 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 44 H 0.13 3.47 7.46 -2.91 -0.02 3.44 16 45 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.07 3.07 6.59 -2.38 -0.02 3.05 16 47 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 48 H 0.07 1.88 6.34 -2.39 -0.02 1.86 16 Total: -1.00 -66.04 365.46 4.85 -61.19 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.87 Total: 21.54 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 4.87 Total: -32.44 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.09 Total: -85.14 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.53 Total: -14.50 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.71 Total: 49.35 kcal Total: -66.04 4.85 -61.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207360091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.166 kcal (2) G-P(sol) polarization free energy of solvation -66.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds