Wall clock time and date at job start Tue Mar 31 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 120.02845 * 2 1 4 4 C 1.38243 * 120.05600 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.94403 * 179.72182 * 4 3 2 6 6 C 1.52995 * 109.46943 * 59.99818 * 5 4 3 7 7 C 1.52998 * 109.47073 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.47346 * 299.99899 * 5 4 3 9 9 C 1.38294 * 120.11148 * 359.97438 * 4 3 2 10 10 C 1.38125 * 120.05573 * 0.02562 * 9 4 3 11 11 C 1.38711 * 120.02884 * 180.02562 * 2 1 3 12 12 O 1.35900 * 120.05650 * 359.95643 * 11 2 1 13 13 C 1.42896 * 117.00344 * 175.01980 * 12 11 2 14 14 H 1.08998 * 110.88643 * 322.02668 * 13 12 11 15 15 C 1.55150 * 111.00633 * 198.10035 * 13 12 11 16 16 C 1.54322 * 102.94597 * 206.42339 * 15 13 12 17 17 N 1.47023 * 107.26813 * 22.19326 * 16 15 13 18 18 C 1.36943 * 125.64796 * 181.02197 * 17 16 15 19 19 H 1.07998 * 120.00104 * 185.24534 * 18 17 16 20 20 C 1.38812 * 119.99956 * 5.25025 * 18 17 16 21 21 N 1.31624 * 119.99826 * 352.91617 * 20 18 17 22 22 Si 1.86805 * 119.99946 * 172.90984 * 20 18 17 23 23 H 1.48501 * 109.46502 * 94.98371 * 22 20 18 24 24 H 1.48501 * 109.47069 * 214.98407 * 22 20 18 25 25 H 1.48496 * 109.47071 * 334.98354 * 22 20 18 26 26 C 1.47418 * 108.70572 * 1.06068 * 17 16 15 27 27 H 1.09001 * 109.47145 * 89.99873 * 1 2 3 28 28 H 1.09002 * 109.46807 * 209.99916 * 1 2 3 29 29 H 1.09001 * 109.47002 * 329.99922 * 1 2 3 30 30 H 1.08000 * 119.97072 * 0.04317 * 3 2 1 31 31 H 1.09003 * 109.47175 * 60.00044 * 6 5 4 32 32 H 1.09010 * 109.47042 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47493 * 299.99796 * 6 5 4 34 34 H 1.09002 * 109.47217 * 60.00165 * 7 5 4 35 35 H 1.09000 * 109.47408 * 179.97438 * 7 5 4 36 36 H 1.08995 * 109.47305 * 300.00423 * 7 5 4 37 37 H 1.09001 * 109.47160 * 59.99444 * 8 5 4 38 38 H 1.08995 * 109.47552 * 179.97438 * 8 5 4 39 39 H 1.08998 * 109.47053 * 300.00327 * 8 5 4 40 40 H 1.07998 * 119.97209 * 179.97438 * 9 4 3 41 41 H 1.07996 * 120.02339 * 180.02562 * 10 9 4 42 42 H 1.08995 * 110.72421 * 324.78526 * 15 13 12 43 43 H 1.09003 * 110.72105 * 88.05872 * 15 13 12 44 44 H 1.09003 * 109.88578 * 262.78093 * 16 15 13 45 45 H 1.08998 * 109.88442 * 141.60802 * 16 15 13 46 46 H 0.97003 * 119.99398 * 179.97438 * 21 20 18 47 47 H 1.09000 * 110.37213 * 217.03699 * 26 17 16 48 48 H 1.08995 * 110.46271 * 94.75415 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.3325 2.5031 -0.0069 6 6 3.9621 3.3106 1.2387 7 6 5.8371 2.2257 -0.0055 8 6 3.9613 3.2991 -1.2596 9 6 4.2752 0.0009 -0.0005 10 6 3.5887 -1.1976 -0.0005 11 6 2.2012 -1.2009 -0.0005 12 8 1.5234 -2.3789 -0.0002 13 6 2.2992 -3.5738 -0.1113 14 1 3.1340 -3.4327 -0.7977 15 6 1.4155 -4.7720 -0.5478 16 6 2.1707 -5.9873 0.0303 17 7 3.0123 -5.4950 1.1307 18 6 3.8563 -6.2580 1.8929 19 1 4.3700 -5.8180 2.7348 20 6 4.0516 -7.5970 1.5833 21 7 3.3237 -8.1690 0.6476 22 14 5.3474 -8.5869 2.4944 23 1 4.7136 -9.3072 3.6279 24 1 5.9634 -9.5689 1.5663 25 1 6.3953 -7.6716 3.0134 26 6 2.7965 -4.0442 1.2784 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1315 0.0007 31 1 4.2266 2.7435 2.1313 32 1 4.5061 4.2552 1.2344 33 1 2.8902 3.5082 1.2382 34 1 6.1013 1.6502 -0.8927 35 1 6.3808 3.1704 -0.0106 36 1 6.1013 1.6588 0.8871 37 1 2.8893 3.4966 -1.2602 38 1 4.5045 4.2440 -1.2640 39 1 4.2250 2.7238 -2.1471 40 1 5.3552 0.0041 -0.0014 41 1 4.1315 -2.1313 -0.0001 42 1 0.4190 -4.6949 -0.1131 43 1 1.3594 -4.8341 -1.6346 44 1 2.7955 -6.4369 -0.7415 45 1 1.4586 -6.7210 0.4078 46 1 3.4605 -9.1046 0.4310 47 1 3.7312 -3.5458 1.5354 48 1 2.0407 -3.8468 2.0385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227673805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:14 Heat of formation + Delta-G solvation = -5.017601 kcal Electronic energy + Delta-G solvation = -25143.891717 eV Core-core repulsion = 21778.125131 eV Total energy + Delta-G solvation = -3365.766586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.37741 -38.71011 -36.77403 -35.36173 -32.61760 -32.20057 -29.61964 -28.98350 -27.95213 -27.43444 -27.40283 -26.11310 -24.57492 -22.72387 -21.79023 -20.33291 -19.95922 -18.86289 -17.85531 -17.01320 -15.86610 -15.70349 -15.10558 -14.70718 -14.62129 -14.34419 -14.00055 -13.92304 -13.61530 -13.16089 -13.14801 -12.81851 -12.73040 -12.58991 -12.36597 -12.10542 -11.99468 -11.97910 -11.86092 -11.74243 -11.46317 -11.15533 -10.99696 -10.97272 -10.81659 -10.68151 -10.45449 -10.33134 -10.18722 -10.04631 -9.83932 -9.71641 -8.66695 -8.61805 -7.76919 -6.89902 -5.77278 -3.10508 1.46260 1.57652 3.37766 3.43135 3.45401 3.53414 3.83987 4.47304 4.51615 4.62845 4.86450 4.93720 5.04802 5.15369 5.24321 5.32473 5.33163 5.39498 5.44204 5.45066 5.53730 5.59661 5.61591 5.64019 5.68552 5.70450 5.72146 5.76710 5.81594 5.87600 5.92118 5.99091 6.10539 6.15380 6.19658 6.30134 6.37642 6.42686 6.49688 6.55116 6.62156 6.70006 6.73979 7.01513 7.48812 7.54605 7.73037 7.81874 8.19400 9.15874 9.75900 10.41014 11.34887 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.003278 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.741078 B = 8538.571641 C = 9531.910905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.116 4.116 5 C -0.023 4.023 6 C -0.138 4.138 7 C -0.144 4.144 8 C -0.137 4.137 9 C -0.085 4.085 10 C -0.201 4.201 11 C 0.137 3.863 12 O -0.304 6.304 13 C 0.067 3.933 14 H 0.079 0.921 15 C -0.134 4.134 16 C 0.178 3.822 17 N -0.602 5.602 18 C -0.231 4.231 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.119 3.881 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.253 0.747 47 H 0.043 0.957 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 21.947 -3.867 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C -0.099 4.099 4 C -0.116 4.116 5 C -0.023 4.023 6 C -0.195 4.195 7 C -0.202 4.202 8 C -0.194 4.194 9 C -0.103 4.103 10 C -0.220 4.220 11 C 0.091 3.909 12 O -0.217 6.217 13 C 0.010 3.990 14 H 0.096 0.904 15 C -0.172 4.172 16 C 0.053 3.947 17 N -0.330 5.330 18 C -0.359 4.359 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.206 1.206 26 C -0.008 4.008 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.193 21.671 -3.853 22.043 hybrid contribution 0.923 -0.755 0.466 1.280 sum -0.271 20.916 -3.387 21.191 Atomic orbital electron populations 1.20568 0.90821 1.02540 1.01960 1.19203 0.96284 0.90366 1.06538 1.20570 0.93325 0.96398 0.99616 1.19579 0.93344 0.94100 1.04552 1.19382 0.94733 0.92406 0.95793 1.21892 1.01361 0.99214 0.97039 1.21963 0.94516 1.01529 1.02148 1.21885 1.01366 0.99266 0.96932 1.20932 0.99830 0.91183 0.98382 1.21440 0.93344 0.99624 1.07555 1.18895 0.90456 0.86055 0.95503 1.86073 1.36200 1.12259 1.87137 1.23814 0.94323 0.81860 0.99039 0.90351 1.23001 0.99387 0.94399 1.00445 1.21216 0.92562 0.90582 0.90348 1.44344 1.49264 1.01199 1.38210 1.19055 1.17705 0.91542 1.07644 0.90323 1.24834 0.99681 0.96779 0.98906 1.69964 1.41004 1.11686 1.34043 0.86104 0.81271 0.79851 0.78580 1.21586 1.21549 1.20566 1.21963 0.98050 0.87110 0.93628 0.91747 0.91035 0.92165 0.86075 0.92469 0.92674 0.92557 0.92276 0.92622 0.92198 0.92564 0.92667 0.92544 0.85740 0.84931 0.91177 0.91409 0.92940 0.93438 0.93631 0.93917 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.79 36.01 0.35 -0.86 16 2 C -0.12 -1.70 5.89 -104.47 -0.62 -2.32 16 3 C -0.08 -0.97 8.36 -39.61 -0.33 -1.30 16 4 C -0.12 -1.36 4.76 -104.60 -0.50 -1.86 16 5 C -0.02 -0.21 0.85 -155.67 -0.13 -0.35 16 6 C -0.14 -1.16 8.28 37.15 0.31 -0.86 16 7 C -0.14 -1.24 7.13 37.16 0.26 -0.98 16 8 C -0.14 -1.13 8.29 37.16 0.31 -0.82 16 9 C -0.09 -1.12 8.97 -39.60 -0.36 -1.47 16 10 C -0.20 -3.07 8.74 -39.43 -0.34 -3.41 16 11 C 0.14 2.18 6.61 -39.22 -0.26 1.92 16 12 O -0.30 -5.34 9.00 -19.42 -0.17 -5.51 16 13 C 0.07 1.25 2.82 -24.58 -0.07 1.18 16 14 H 0.08 1.44 6.57 -51.93 -0.34 1.10 16 15 C -0.13 -2.59 6.69 -24.90 -0.17 -2.75 16 16 C 0.18 4.32 5.38 -3.06 -0.02 4.30 16 17 N -0.60 -15.58 3.39 -170.07 -0.58 -16.16 16 18 C -0.23 -6.49 10.27 -15.06 -0.15 -6.65 16 19 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 20 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 21 N -0.92 -26.86 10.36 55.49 0.57 -26.29 16 22 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.12 2.58 6.62 -2.53 -0.02 2.56 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 29 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.12 1.19 7.09 -52.49 -0.37 0.82 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.06 0.46 7.38 -51.93 -0.38 0.07 16 34 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.53 7.52 -51.93 -0.39 0.14 16 37 H 0.06 0.45 7.39 -51.93 -0.38 0.06 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.12 1.43 5.89 -52.49 -0.31 1.12 16 41 H 0.13 2.11 5.34 -52.49 -0.28 1.83 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 45 H 0.05 1.27 7.61 -51.93 -0.40 0.87 16 46 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.04 0.90 7.30 -51.93 -0.38 0.52 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -29.94 370.50 -9.61 -39.54 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.17 Total: -0.25 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.82 Total: -13.92 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.00 Total: -42.44 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.17 Total: -5.51 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.94 -9.61 -39.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227673805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.527 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds