Wall clock time and date at job start Tue Mar 31 2020 07:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 120.02845 * 2 1 4 4 C 1.38243 * 120.05600 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.94403 * 179.72182 * 4 3 2 6 6 C 1.52995 * 109.46943 * 59.99818 * 5 4 3 7 7 C 1.52998 * 109.47073 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.47346 * 299.99899 * 5 4 3 9 9 C 1.38294 * 120.11148 * 359.97438 * 4 3 2 10 10 C 1.38125 * 120.05573 * 0.02562 * 9 4 3 11 11 C 1.38711 * 120.02884 * 180.02562 * 2 1 3 12 12 O 1.35900 * 120.05650 * 359.95643 * 11 2 1 13 13 C 1.42896 * 117.00344 * 175.01980 * 12 11 2 14 14 H 1.08998 * 110.88643 * 322.02668 * 13 12 11 15 15 C 1.55150 * 111.00633 * 198.10035 * 13 12 11 16 16 C 1.54322 * 102.94597 * 206.42339 * 15 13 12 17 17 N 1.47023 * 107.26813 * 22.19326 * 16 15 13 18 18 C 1.36943 * 125.64796 * 181.02197 * 17 16 15 19 19 H 1.07998 * 120.00104 * 185.24534 * 18 17 16 20 20 C 1.38812 * 119.99956 * 5.25025 * 18 17 16 21 21 N 1.31624 * 119.99826 * 352.91617 * 20 18 17 22 22 Si 1.86805 * 119.99946 * 172.90984 * 20 18 17 23 23 H 1.48501 * 109.46502 * 94.98371 * 22 20 18 24 24 H 1.48501 * 109.47069 * 214.98407 * 22 20 18 25 25 H 1.48496 * 109.47071 * 334.98354 * 22 20 18 26 26 C 1.47418 * 108.70572 * 1.06068 * 17 16 15 27 27 H 1.09001 * 109.47145 * 89.99873 * 1 2 3 28 28 H 1.09002 * 109.46807 * 209.99916 * 1 2 3 29 29 H 1.09001 * 109.47002 * 329.99922 * 1 2 3 30 30 H 1.08000 * 119.97072 * 0.04317 * 3 2 1 31 31 H 1.09003 * 109.47175 * 60.00044 * 6 5 4 32 32 H 1.09010 * 109.47042 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47493 * 299.99796 * 6 5 4 34 34 H 1.09002 * 109.47217 * 60.00165 * 7 5 4 35 35 H 1.09000 * 109.47408 * 179.97438 * 7 5 4 36 36 H 1.08995 * 109.47305 * 300.00423 * 7 5 4 37 37 H 1.09001 * 109.47160 * 59.99444 * 8 5 4 38 38 H 1.08995 * 109.47552 * 179.97438 * 8 5 4 39 39 H 1.08998 * 109.47053 * 300.00327 * 8 5 4 40 40 H 1.07998 * 119.97209 * 179.97438 * 9 4 3 41 41 H 1.07996 * 120.02339 * 180.02562 * 10 9 4 42 42 H 1.08995 * 110.72421 * 324.78526 * 15 13 12 43 43 H 1.09003 * 110.72105 * 88.05872 * 15 13 12 44 44 H 1.09003 * 109.88578 * 262.78093 * 16 15 13 45 45 H 1.08998 * 109.88442 * 141.60802 * 16 15 13 46 46 H 0.97003 * 119.99398 * 179.97438 * 21 20 18 47 47 H 1.09000 * 110.37213 * 217.03699 * 26 17 16 48 48 H 1.08995 * 110.46271 * 94.75415 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.3325 2.5031 -0.0069 6 6 3.9621 3.3106 1.2387 7 6 5.8371 2.2257 -0.0055 8 6 3.9613 3.2991 -1.2596 9 6 4.2752 0.0009 -0.0005 10 6 3.5887 -1.1976 -0.0005 11 6 2.2012 -1.2009 -0.0005 12 8 1.5234 -2.3789 -0.0002 13 6 2.2992 -3.5738 -0.1113 14 1 3.1340 -3.4327 -0.7977 15 6 1.4155 -4.7720 -0.5478 16 6 2.1707 -5.9873 0.0303 17 7 3.0123 -5.4950 1.1307 18 6 3.8563 -6.2580 1.8929 19 1 4.3700 -5.8180 2.7348 20 6 4.0516 -7.5970 1.5833 21 7 3.3237 -8.1690 0.6476 22 14 5.3474 -8.5869 2.4944 23 1 4.7136 -9.3072 3.6279 24 1 5.9634 -9.5689 1.5663 25 1 6.3953 -7.6716 3.0134 26 6 2.7965 -4.0442 1.2784 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1315 0.0007 31 1 4.2266 2.7435 2.1313 32 1 4.5061 4.2552 1.2344 33 1 2.8902 3.5082 1.2382 34 1 6.1013 1.6502 -0.8927 35 1 6.3808 3.1704 -0.0106 36 1 6.1013 1.6588 0.8871 37 1 2.8893 3.4966 -1.2602 38 1 4.5045 4.2440 -1.2640 39 1 4.2250 2.7238 -2.1471 40 1 5.3552 0.0041 -0.0014 41 1 4.1315 -2.1313 -0.0001 42 1 0.4190 -4.6949 -0.1131 43 1 1.3594 -4.8341 -1.6346 44 1 2.7955 -6.4369 -0.7415 45 1 1.4586 -6.7210 0.4078 46 1 3.4605 -9.1046 0.4310 47 1 3.7312 -3.5458 1.5354 48 1 2.0407 -3.8468 2.0385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227673805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:13 Heat of formation + Delta-G solvation = -19.169841 kcal Electronic energy + Delta-G solvation = -25144.505404 eV Core-core repulsion = 21778.125131 eV Total energy + Delta-G solvation = -3366.380273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52393 -39.93187 -38.25674 -36.51745 -34.30046 -33.52440 -31.33334 -30.19688 -29.17033 -28.75155 -28.02792 -27.08294 -26.48688 -23.91936 -22.88239 -22.14479 -21.48455 -19.76703 -19.09860 -18.99022 -17.10060 -16.81181 -16.65707 -16.42606 -15.78348 -15.56980 -15.32774 -15.05127 -14.65229 -14.38066 -14.23730 -14.10098 -14.01634 -13.84090 -13.71013 -13.31391 -13.23913 -12.98742 -12.85808 -12.73822 -12.72650 -12.53458 -12.44791 -12.21210 -12.11177 -12.06453 -11.94417 -11.77015 -11.59758 -11.50363 -11.36495 -11.26465 -10.73607 -9.70162 -9.01016 -8.88186 -7.91835 -5.28277 0.41451 0.50451 1.44709 1.46380 1.56163 2.15492 2.48065 2.79216 3.27347 3.59785 3.64894 3.72146 3.82228 3.89428 3.91460 4.02023 4.15322 4.17955 4.32458 4.39849 4.46355 4.54427 4.57685 4.69614 4.76196 4.78580 4.84552 4.85297 4.86870 4.91334 4.95348 4.97639 5.02358 5.08035 5.08902 5.13368 5.25852 5.37658 5.38129 5.40113 5.51116 5.52778 5.54866 5.59463 5.66393 5.76424 5.94520 6.11599 6.51026 7.02712 7.67301 8.31933 9.19102 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.003278 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.741078 B = 8538.571641 C = 9531.910905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.127 4.127 3 C -0.079 4.079 4 C -0.107 4.107 5 C -0.024 4.024 6 C -0.137 4.137 7 C -0.146 4.146 8 C -0.136 4.136 9 C -0.094 4.094 10 C -0.214 4.214 11 C 0.103 3.897 12 O -0.309 6.309 13 C 0.087 3.913 14 H 0.082 0.918 15 C -0.120 4.120 16 C 0.186 3.814 17 N -0.623 5.623 18 C -0.251 4.251 19 H 0.081 0.919 20 C -0.060 4.060 21 N -0.947 5.947 22 Si 0.981 3.019 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.268 1.268 26 C 0.120 3.880 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.025 0.975 45 H 0.015 0.985 46 H 0.250 0.750 47 H 0.045 0.955 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 24.878 -3.947 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C -0.096 4.096 4 C -0.107 4.107 5 C -0.024 4.024 6 C -0.194 4.194 7 C -0.203 4.203 8 C -0.193 4.193 9 C -0.112 4.112 10 C -0.233 4.233 11 C 0.058 3.942 12 O -0.222 6.222 13 C 0.030 3.970 14 H 0.100 0.900 15 C -0.158 4.158 16 C 0.061 3.939 17 N -0.351 5.351 18 C -0.380 4.380 19 H 0.099 0.901 20 C -0.253 4.253 21 N -0.595 5.595 22 Si 0.808 3.192 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.193 1.193 26 C -0.006 4.006 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.043 0.957 45 H 0.033 0.967 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.908 24.643 -3.926 24.971 hybrid contribution 0.844 -1.519 0.518 1.813 sum -0.064 23.125 -3.409 23.375 Atomic orbital electron populations 1.20603 0.89496 1.02944 1.02695 1.19546 0.97448 0.90078 1.05722 1.20898 0.93513 0.96808 0.98430 1.19966 0.93676 0.94860 1.02213 1.19468 0.94703 0.91227 0.96967 1.21889 1.02011 0.99604 0.95898 1.21976 0.94352 1.02277 1.01684 1.21876 1.02005 0.99640 0.95759 1.21135 1.00589 0.91048 0.98435 1.21428 0.93341 0.99915 1.08637 1.19190 0.90935 0.86001 0.98080 1.86037 1.35924 1.12315 1.87908 1.23394 0.94215 0.82550 0.96879 0.89999 1.22826 0.98971 0.92276 1.01769 1.20964 0.91554 0.92104 0.89298 1.44623 1.49235 1.02972 1.38239 1.19427 1.18122 0.92262 1.08178 0.90104 1.25696 1.01679 0.97826 1.00103 1.70169 1.42253 1.11649 1.35463 0.85040 0.78753 0.78162 0.77217 1.21269 1.21608 1.19293 1.22016 0.98022 0.85107 0.95442 0.90789 0.92660 0.89727 0.83263 0.93511 0.91017 0.91975 0.92625 0.91019 0.92837 0.91986 0.91045 0.93300 0.84569 0.86464 0.90303 0.88822 0.95676 0.96690 0.94048 0.93701 0.96094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.18 9.79 71.24 0.70 -1.49 16 2 C -0.13 -3.31 5.89 -19.77 -0.12 -3.43 16 3 C -0.08 -1.68 8.36 22.25 0.19 -1.50 16 4 C -0.11 -2.30 4.76 -19.85 -0.09 -2.39 16 5 C -0.02 -0.37 0.85 -52.93 -0.05 -0.42 16 6 C -0.14 -1.88 8.28 71.98 0.60 -1.28 16 7 C -0.15 -2.18 7.13 71.98 0.51 -1.67 16 8 C -0.14 -1.79 8.29 71.98 0.60 -1.19 16 9 C -0.09 -2.39 8.97 22.26 0.20 -2.19 16 10 C -0.21 -6.56 8.74 22.37 0.20 -6.37 16 11 C 0.10 3.24 6.61 22.51 0.15 3.39 16 12 O -0.31 -10.80 9.00 -92.42 -0.83 -11.63 16 13 C 0.09 3.29 2.82 31.99 0.09 3.38 16 14 H 0.08 3.04 6.57 -2.39 -0.02 3.03 16 15 C -0.12 -4.66 6.69 31.78 0.21 -4.45 16 16 C 0.19 9.38 5.38 86.73 0.47 9.84 16 17 N -0.62 -33.26 3.39 -691.99 -2.35 -35.61 16 18 C -0.25 -14.45 10.27 84.03 0.86 -13.59 16 19 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 20 C -0.06 -3.42 5.48 84.86 0.46 -2.95 16 21 N -0.95 -57.08 10.36 21.65 0.22 -56.85 16 22 Si 0.98 45.93 29.56 68.60 2.03 47.96 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C 0.12 5.32 6.62 86.86 0.58 5.90 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 29 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 30 H 0.15 2.33 7.09 -2.91 -0.02 2.31 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.78 7.38 -2.39 -0.02 0.76 16 34 H 0.05 0.87 7.50 -2.39 -0.02 0.85 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.86 7.52 -2.39 -0.02 0.85 16 37 H 0.06 0.75 7.39 -2.39 -0.02 0.73 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.14 3.03 5.89 -2.91 -0.02 3.01 16 41 H 0.12 3.86 5.34 -2.91 -0.02 3.85 16 42 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.02 1.38 7.30 -2.39 -0.02 1.37 16 45 H 0.01 0.84 7.61 -2.39 -0.02 0.82 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.04 1.94 7.30 -2.39 -0.02 1.93 16 48 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -65.97 370.50 5.54 -60.43 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.92 Total: 16.09 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 5.55 Total: -20.40 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -2.12 Total: -92.46 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.83 Total: -11.63 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -65.97 5.54 -60.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227673805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.261 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds