Wall clock time and date at job start Tue Mar 31 2020 07:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38161 * 120.02723 * 2 1 4 4 C 1.38246 * 120.05777 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10773 * 359.97438 * 4 3 2 6 6 C 1.38121 * 120.05436 * 359.77097 * 5 4 3 7 7 C 1.50708 * 120.02867 * 180.28023 * 6 5 4 8 8 C 1.53005 * 109.46860 * 7.51195 * 7 6 5 9 9 C 1.52993 * 109.47259 * 127.51145 * 7 6 5 10 10 C 1.52996 * 109.46881 * 247.51403 * 7 6 5 11 11 C 1.38707 * 120.02664 * 180.02562 * 2 1 3 12 12 O 1.35898 * 120.05706 * 359.97438 * 11 2 1 13 13 C 1.42900 * 117.00137 * 84.69669 * 12 11 2 14 14 H 1.09001 * 110.77829 * 19.40909 * 13 12 11 15 15 C 1.55154 * 110.71904 * 142.63976 * 13 12 11 16 16 C 1.54915 * 101.58403 * 153.86736 * 15 13 12 17 17 N 1.47424 * 104.82781 * 322.99130 * 16 15 13 18 18 C 1.36936 * 125.64888 * 204.08766 * 17 16 15 19 19 H 1.08000 * 120.00150 * 173.78880 * 18 17 16 20 20 C 1.38816 * 120.00057 * 353.78528 * 18 17 16 21 21 N 1.31624 * 119.99639 * 327.24706 * 20 18 17 22 22 Si 1.86796 * 120.00255 * 147.24287 * 20 18 17 23 23 H 1.48498 * 109.47295 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.46802 * 300.00457 * 22 20 18 25 25 H 1.48493 * 109.47034 * 60.00193 * 22 20 18 26 26 C 1.47026 * 108.70548 * 24.35527 * 17 16 15 27 27 H 1.09008 * 109.47170 * 274.59338 * 1 2 3 28 28 H 1.09001 * 109.46983 * 34.58890 * 1 2 3 29 29 H 1.08999 * 109.47278 * 154.58907 * 1 2 3 30 30 H 1.08005 * 119.97738 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.94465 * 179.97438 * 4 3 2 32 32 H 1.07996 * 119.97277 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.46780 * 60.00011 * 8 7 6 34 34 H 1.09000 * 109.46629 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.46696 * 300.00483 * 8 7 6 36 36 H 1.09005 * 109.46871 * 60.00209 * 9 7 6 37 37 H 1.09000 * 109.47212 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47525 * 300.00051 * 9 7 6 39 39 H 1.09000 * 109.47359 * 70.47252 * 10 7 6 40 40 H 1.08994 * 109.47093 * 190.46937 * 10 7 6 41 41 H 1.08996 * 109.47416 * 310.47327 * 10 7 6 42 42 H 1.09007 * 111.00612 * 35.79639 * 15 13 12 43 43 H 1.09002 * 111.01201 * 271.94077 * 15 13 12 44 44 H 1.08994 * 110.36848 * 204.15604 * 16 15 13 45 45 H 1.08999 * 110.36161 * 81.82894 * 16 15 13 46 46 H 0.97005 * 120.00313 * 355.72934 * 21 20 18 47 47 H 1.08999 * 109.88013 * 118.12824 * 26 17 16 48 48 H 1.08994 * 109.88067 * 239.29138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2752 0.0010 -0.0005 6 6 3.5886 -1.1975 0.0048 7 6 4.3459 -2.5005 0.0112 8 6 5.8386 -2.2219 0.1990 9 6 3.8424 -3.3774 1.1592 10 6 4.1257 -3.2248 -1.3184 11 6 2.2011 -1.2009 -0.0005 12 8 1.5234 -2.3788 -0.0005 13 6 1.0973 -2.8822 -1.2683 14 1 1.6663 -2.4240 -2.0773 15 6 1.2232 -4.4279 -1.3156 16 6 0.1484 -4.7954 -2.3689 17 7 -0.9563 -3.8498 -2.1265 18 6 -2.2685 -4.0527 -2.4614 19 1 -3.0209 -3.3424 -2.1519 20 6 -2.6317 -5.1713 -3.1989 21 7 -1.8036 -5.6666 -4.0941 22 14 -4.2955 -5.9736 -2.9208 23 1 -4.4391 -7.1421 -3.8258 24 1 -4.3974 -6.4254 -1.5098 25 1 -5.3723 -4.9915 -3.2051 26 6 -0.4149 -2.6501 -1.4714 27 1 -0.3634 0.0823 1.0244 28 1 -0.3633 0.8460 -0.5834 29 1 -0.3634 -0.9282 -0.4410 30 1 1.6585 2.1316 -0.0004 31 1 4.1194 2.1330 -0.0010 32 1 5.3552 0.0041 -0.0005 33 1 5.9954 -1.7058 1.1462 34 1 6.3863 -3.1643 0.2032 35 1 6.1973 -1.5970 -0.6189 36 1 2.7789 -3.5759 1.0253 37 1 4.3898 -4.3200 1.1636 38 1 3.9992 -2.8614 2.1064 39 1 4.6467 -2.6914 -2.1134 40 1 4.5142 -4.2407 -1.2474 41 1 3.0594 -3.2583 -1.5416 42 1 0.9878 -4.8690 -0.3469 43 1 2.2162 -4.7291 -1.6493 44 1 -0.1910 -5.8208 -2.2227 45 1 0.5445 -4.6660 -3.3761 46 1 -0.9662 -5.2147 -4.2827 47 1 -0.5763 -1.7775 -2.1043 48 1 -0.8988 -2.5048 -0.5057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227992438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:17 Heat of formation + Delta-G solvation = 15.546741 kcal Electronic energy + Delta-G solvation = -26544.297854 eV Core-core repulsion = 23179.423005 eV Total energy + Delta-G solvation = -3364.874849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75405 -38.16020 -36.62014 -36.15685 -32.54463 -32.08402 -29.85218 -29.13954 -28.17906 -27.41017 -27.04246 -25.93833 -24.31348 -22.88850 -21.63436 -20.45787 -20.21574 -18.93518 -17.93627 -17.64096 -15.96823 -15.67994 -15.27692 -14.97852 -14.29562 -14.20559 -13.92255 -13.73867 -13.45750 -13.41170 -13.24153 -12.85021 -12.64918 -12.56598 -12.32993 -12.20000 -11.99586 -11.87297 -11.66655 -11.64292 -11.38890 -11.10160 -10.89604 -10.84116 -10.70223 -10.55715 -10.46458 -10.24717 -10.02239 -9.99303 -9.60605 -9.31227 -8.58973 -8.43462 -8.33065 -7.00366 -6.16754 -3.07230 1.24544 1.35327 3.46113 3.51061 3.56881 3.73711 4.03002 4.54730 4.59268 4.72656 4.92872 4.99666 5.05533 5.09512 5.15343 5.21396 5.31018 5.33195 5.45150 5.47163 5.53013 5.57938 5.63521 5.66998 5.75890 5.81056 5.82083 5.87861 5.92786 6.01034 6.02600 6.04732 6.15602 6.19757 6.22758 6.35893 6.40823 6.44843 6.48839 6.50140 6.53814 6.57742 6.71808 6.88822 6.95444 6.98708 7.74415 7.84189 8.46246 8.98230 9.81106 10.33973 11.19662 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.004266 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.491307 B = 6561.759587 C = 7470.697062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.118 4.118 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.082 4.082 7 C -0.020 4.020 8 C -0.143 4.143 9 C -0.146 4.146 10 C -0.166 4.166 11 C 0.102 3.898 12 O -0.317 6.317 13 C 0.081 3.919 14 H 0.071 0.929 15 C -0.139 4.139 16 C 0.143 3.857 17 N -0.600 5.600 18 C -0.343 4.343 19 H 0.070 0.930 20 C -0.022 4.022 21 N -0.913 5.913 22 Si 1.059 2.941 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.121 3.879 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.024 0.976 46 H 0.268 0.732 47 H 0.026 0.974 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.370 10.242 8.899 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C -0.136 4.136 4 C -0.143 4.143 5 C -0.139 4.139 6 C -0.082 4.082 7 C -0.020 4.020 8 C -0.200 4.200 9 C -0.203 4.203 10 C -0.223 4.223 11 C 0.059 3.941 12 O -0.233 6.233 13 C 0.026 3.974 14 H 0.089 0.911 15 C -0.177 4.177 16 C 0.018 3.982 17 N -0.329 5.329 18 C -0.470 4.470 19 H 0.088 0.912 20 C -0.223 4.223 21 N -0.554 5.554 22 Si 0.888 3.112 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.005 4.005 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.080 0.920 47 H 0.044 0.956 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.231 8.838 8.573 18.074 hybrid contribution 1.063 1.730 0.274 2.049 sum 14.295 10.568 8.847 19.857 Atomic orbital electron populations 1.21211 0.90694 1.04893 1.02632 1.20318 0.96948 0.92563 0.99889 1.20913 0.94147 0.97118 1.01443 1.21086 0.94203 0.97860 1.01138 1.21019 0.99969 0.91418 1.01517 1.20156 0.92588 0.95271 1.00216 1.19352 0.93934 0.91928 0.96760 1.21989 0.95026 1.01558 1.01412 1.22047 1.03700 0.98140 0.96426 1.22451 1.04451 0.99804 0.95561 1.18401 0.89320 0.85445 1.00963 1.86074 1.72882 1.34471 1.29920 1.23469 0.95437 0.95033 0.83504 0.91146 1.23250 0.99927 0.92939 1.01571 1.21574 0.86980 0.95537 0.94118 1.44514 1.04480 1.13568 1.70340 1.19720 0.81466 1.10935 1.34896 0.91221 1.25654 1.05518 0.97013 0.94132 1.70823 1.12677 1.45304 1.26592 0.83611 0.74957 0.76604 0.76007 1.21113 1.22113 1.22043 1.21820 0.91101 0.90828 0.96759 0.91170 0.91846 0.88671 0.86054 0.86203 0.85558 0.92560 0.92420 0.92549 0.89621 0.92986 0.93333 0.93060 0.92228 0.89845 0.90340 0.90642 0.91982 0.95844 0.92020 0.95643 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.84 36.01 0.35 -1.59 16 2 C -0.10 -1.38 5.89 -104.47 -0.62 -2.00 16 3 C -0.12 -1.44 9.72 -39.61 -0.38 -1.82 16 4 C -0.12 -1.38 10.04 -39.56 -0.40 -1.78 16 5 C -0.12 -1.41 9.00 -39.60 -0.36 -1.77 16 6 C -0.08 -1.09 4.76 -104.47 -0.50 -1.59 16 7 C -0.02 -0.24 0.75 -155.66 -0.12 -0.35 16 8 C -0.14 -1.38 7.14 37.16 0.27 -1.12 16 9 C -0.15 -1.82 8.15 37.15 0.30 -1.52 16 10 C -0.17 -2.09 7.80 37.16 0.29 -1.80 16 11 C 0.10 1.55 5.15 -39.22 -0.20 1.35 16 12 O -0.32 -5.22 6.02 -19.42 -0.12 -5.34 16 13 C 0.08 1.44 2.02 -24.89 -0.05 1.39 16 14 H 0.07 1.24 6.81 -51.93 -0.35 0.89 16 15 C -0.14 -2.51 6.29 -24.58 -0.15 -2.67 16 16 C 0.14 3.31 5.20 -2.53 -0.01 3.30 16 17 N -0.60 -15.31 3.37 -170.07 -0.57 -15.88 16 18 C -0.34 -9.74 10.01 -15.06 -0.15 -9.89 16 19 H 0.07 1.97 8.01 -52.49 -0.42 1.55 16 20 C -0.02 -0.62 5.00 -17.43 -0.09 -0.70 16 21 N -0.91 -27.42 12.72 55.49 0.71 -26.71 16 22 Si 1.06 25.38 30.03 -169.99 -5.10 20.28 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 26 C 0.12 2.56 5.04 -3.06 -0.02 2.54 16 27 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 28 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 29 H 0.09 1.54 2.58 -51.93 -0.13 1.41 16 30 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.20 5.92 -52.49 -0.31 0.89 16 33 H 0.06 0.51 7.86 -51.93 -0.41 0.11 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.51 7.16 -51.93 -0.37 0.14 16 36 H 0.09 1.24 5.59 -51.93 -0.29 0.95 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 40 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 41 H 0.08 1.19 1.56 -51.93 -0.08 1.11 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.08 1.18 6.19 -51.93 -0.32 0.86 16 44 H 0.06 1.57 7.46 -51.93 -0.39 1.19 16 45 H 0.02 0.57 7.07 -51.93 -0.37 0.20 16 46 H 0.27 8.04 6.03 -40.82 -0.25 7.79 16 47 H 0.03 0.55 7.65 -51.93 -0.40 0.16 16 48 H 0.04 0.93 6.87 -51.93 -0.36 0.57 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -30.65 353.19 -9.06 -39.71 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.46 Total: 2.65 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -1.83 Total: -20.03 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.13 Total: -42.59 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.12 Total: -5.34 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.10 Total: 20.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.65 -9.06 -39.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227992438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.253 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds