Wall clock time and date at job start Tue Mar 31 2020 07:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38161 * 120.02723 * 2 1 4 4 C 1.38246 * 120.05777 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10773 * 359.97438 * 4 3 2 6 6 C 1.38121 * 120.05436 * 359.77097 * 5 4 3 7 7 C 1.50708 * 120.02867 * 180.28023 * 6 5 4 8 8 C 1.53005 * 109.46860 * 7.51195 * 7 6 5 9 9 C 1.52993 * 109.47259 * 127.51145 * 7 6 5 10 10 C 1.52996 * 109.46881 * 247.51403 * 7 6 5 11 11 C 1.38707 * 120.02664 * 180.02562 * 2 1 3 12 12 O 1.35898 * 120.05706 * 359.97438 * 11 2 1 13 13 C 1.42900 * 117.00137 * 84.69669 * 12 11 2 14 14 H 1.09001 * 110.77829 * 19.40909 * 13 12 11 15 15 C 1.55154 * 110.71904 * 142.63976 * 13 12 11 16 16 C 1.54915 * 101.58403 * 153.86736 * 15 13 12 17 17 N 1.47424 * 104.82781 * 322.99130 * 16 15 13 18 18 C 1.36936 * 125.64888 * 204.08766 * 17 16 15 19 19 H 1.08000 * 120.00150 * 173.78880 * 18 17 16 20 20 C 1.38816 * 120.00057 * 353.78528 * 18 17 16 21 21 N 1.31624 * 119.99639 * 327.24706 * 20 18 17 22 22 Si 1.86796 * 120.00255 * 147.24287 * 20 18 17 23 23 H 1.48498 * 109.47295 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.46802 * 300.00457 * 22 20 18 25 25 H 1.48493 * 109.47034 * 60.00193 * 22 20 18 26 26 C 1.47026 * 108.70548 * 24.35527 * 17 16 15 27 27 H 1.09008 * 109.47170 * 274.59338 * 1 2 3 28 28 H 1.09001 * 109.46983 * 34.58890 * 1 2 3 29 29 H 1.08999 * 109.47278 * 154.58907 * 1 2 3 30 30 H 1.08005 * 119.97738 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.94465 * 179.97438 * 4 3 2 32 32 H 1.07996 * 119.97277 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.46780 * 60.00011 * 8 7 6 34 34 H 1.09000 * 109.46629 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.46696 * 300.00483 * 8 7 6 36 36 H 1.09005 * 109.46871 * 60.00209 * 9 7 6 37 37 H 1.09000 * 109.47212 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47525 * 300.00051 * 9 7 6 39 39 H 1.09000 * 109.47359 * 70.47252 * 10 7 6 40 40 H 1.08994 * 109.47093 * 190.46937 * 10 7 6 41 41 H 1.08996 * 109.47416 * 310.47327 * 10 7 6 42 42 H 1.09007 * 111.00612 * 35.79639 * 15 13 12 43 43 H 1.09002 * 111.01201 * 271.94077 * 15 13 12 44 44 H 1.08994 * 110.36848 * 204.15604 * 16 15 13 45 45 H 1.08999 * 110.36161 * 81.82894 * 16 15 13 46 46 H 0.97005 * 120.00313 * 355.72934 * 21 20 18 47 47 H 1.08999 * 109.88013 * 118.12824 * 26 17 16 48 48 H 1.08994 * 109.88067 * 239.29138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2752 0.0010 -0.0005 6 6 3.5886 -1.1975 0.0048 7 6 4.3459 -2.5005 0.0112 8 6 5.8386 -2.2219 0.1990 9 6 3.8424 -3.3774 1.1592 10 6 4.1257 -3.2248 -1.3184 11 6 2.2011 -1.2009 -0.0005 12 8 1.5234 -2.3788 -0.0005 13 6 1.0973 -2.8822 -1.2683 14 1 1.6663 -2.4240 -2.0773 15 6 1.2232 -4.4279 -1.3156 16 6 0.1484 -4.7954 -2.3689 17 7 -0.9563 -3.8498 -2.1265 18 6 -2.2685 -4.0527 -2.4614 19 1 -3.0209 -3.3424 -2.1519 20 6 -2.6317 -5.1713 -3.1989 21 7 -1.8036 -5.6666 -4.0941 22 14 -4.2955 -5.9736 -2.9208 23 1 -4.4391 -7.1421 -3.8258 24 1 -4.3974 -6.4254 -1.5098 25 1 -5.3723 -4.9915 -3.2051 26 6 -0.4149 -2.6501 -1.4714 27 1 -0.3634 0.0823 1.0244 28 1 -0.3633 0.8460 -0.5834 29 1 -0.3634 -0.9282 -0.4410 30 1 1.6585 2.1316 -0.0004 31 1 4.1194 2.1330 -0.0010 32 1 5.3552 0.0041 -0.0005 33 1 5.9954 -1.7058 1.1462 34 1 6.3863 -3.1643 0.2032 35 1 6.1973 -1.5970 -0.6189 36 1 2.7789 -3.5759 1.0253 37 1 4.3898 -4.3200 1.1636 38 1 3.9992 -2.8614 2.1064 39 1 4.6467 -2.6914 -2.1134 40 1 4.5142 -4.2407 -1.2474 41 1 3.0594 -3.2583 -1.5416 42 1 0.9878 -4.8690 -0.3469 43 1 2.2162 -4.7291 -1.6493 44 1 -0.1910 -5.8208 -2.2227 45 1 0.5445 -4.6660 -3.3761 46 1 -0.9662 -5.2147 -4.2827 47 1 -0.5763 -1.7775 -2.1043 48 1 -0.8988 -2.5048 -0.5057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227992438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:16 Heat of formation + Delta-G solvation = 0.352966 kcal Electronic energy + Delta-G solvation = -26544.956706 eV Core-core repulsion = 23179.423005 eV Total energy + Delta-G solvation = -3365.533701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85790 -39.58414 -37.69432 -37.51515 -34.50673 -33.10139 -31.45262 -30.42745 -29.51358 -28.52948 -28.10228 -27.03358 -26.24518 -23.89373 -22.84453 -22.19825 -21.68611 -19.89947 -19.74380 -19.05690 -17.11248 -16.91295 -16.60519 -16.26351 -15.86270 -15.33553 -15.20871 -15.14113 -14.95175 -14.78720 -14.41944 -14.26521 -14.06278 -13.84358 -13.53026 -13.33174 -13.09501 -13.01037 -12.74279 -12.68453 -12.53326 -12.50993 -12.40789 -12.29706 -12.08110 -11.89772 -11.79444 -11.74405 -11.72300 -11.43210 -11.34343 -10.63405 -10.46845 -9.54344 -9.43093 -9.09957 -8.43060 -5.28969 0.23444 0.39731 1.56748 1.64930 1.84392 2.35015 2.62528 2.93545 3.11402 3.45658 3.60462 3.63271 3.78179 3.84108 3.93634 4.02722 4.13740 4.17752 4.28168 4.34681 4.40191 4.47255 4.54662 4.63394 4.67849 4.70916 4.74032 4.76507 4.82360 4.84227 4.89662 4.93383 4.99867 5.00626 5.05876 5.09356 5.16078 5.19925 5.26623 5.32055 5.42030 5.48857 5.57566 5.59174 5.62646 5.75034 5.90217 6.26494 6.62408 6.82980 7.67272 8.23285 8.94077 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.004266 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.491307 B = 6561.759587 C = 7470.697062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.088 4.088 7 C -0.020 4.020 8 C -0.139 4.139 9 C -0.144 4.144 10 C -0.167 4.167 11 C 0.069 3.931 12 O -0.317 6.317 13 C 0.104 3.896 14 H 0.073 0.927 15 C -0.119 4.119 16 C 0.147 3.853 17 N -0.624 5.624 18 C -0.357 4.357 19 H 0.063 0.937 20 C -0.071 4.071 21 N -0.938 5.938 22 Si 1.112 2.888 23 H -0.289 1.289 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.122 3.878 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.142 0.858 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.031 0.969 45 H 0.010 0.990 46 H 0.256 0.744 47 H 0.019 0.981 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.322 11.715 9.966 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.021 4.021 8 C -0.196 4.196 9 C -0.201 4.201 10 C -0.224 4.224 11 C 0.025 3.975 12 O -0.233 6.233 13 C 0.048 3.952 14 H 0.091 0.909 15 C -0.157 4.157 16 C 0.021 3.979 17 N -0.352 5.352 18 C -0.485 4.485 19 H 0.081 0.919 20 C -0.267 4.267 21 N -0.580 5.580 22 Si 0.936 3.064 23 H -0.215 1.215 24 H -0.209 1.209 25 H -0.200 1.200 26 C -0.003 4.003 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.067 0.933 47 H 0.037 0.963 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.202 10.344 9.663 20.772 hybrid contribution 0.519 1.411 -0.018 1.504 sum 15.720 11.755 9.645 21.871 Atomic orbital electron populations 1.21144 0.91286 1.03939 1.02887 1.20473 0.96875 0.93376 1.00849 1.21200 0.94998 0.97044 1.00862 1.21508 0.93845 0.99147 0.98907 1.21377 1.01315 0.90875 1.00420 1.20371 0.91931 0.96646 0.99880 1.19391 0.95455 0.91189 0.96017 1.21955 0.93017 1.02396 1.02187 1.22002 1.02313 0.98937 0.96810 1.22430 1.03088 1.00657 0.96205 1.18702 0.90286 0.84960 1.03520 1.86094 1.73163 1.35521 1.28550 1.23053 0.92813 0.94607 0.84723 0.90894 1.23089 0.99510 0.93347 0.99774 1.21482 0.87705 0.93642 0.95046 1.44787 1.04405 1.15651 1.70365 1.19972 0.82982 1.11133 1.34416 0.91938 1.27036 1.08504 0.97565 0.93622 1.70930 1.12928 1.45892 1.28292 0.82904 0.71512 0.75840 0.76150 1.21477 1.20924 1.20013 1.21922 0.93680 0.89027 0.95675 0.90708 0.90651 0.91257 0.84040 0.82909 0.83015 0.91806 0.91575 0.91556 0.91994 0.91842 0.93246 0.92472 0.91318 0.91916 0.90459 0.87750 0.95012 0.97205 0.93324 0.96294 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.84 71.24 0.70 -3.14 16 2 C -0.12 -3.19 5.89 -19.77 -0.12 -3.30 16 3 C -0.12 -2.69 9.72 22.25 0.22 -2.47 16 4 C -0.12 -2.15 10.04 22.28 0.22 -1.92 16 5 C -0.12 -2.42 9.00 22.25 0.20 -2.22 16 6 C -0.09 -2.16 4.76 -19.77 -0.09 -2.25 16 7 C -0.02 -0.45 0.75 -52.93 -0.04 -0.49 16 8 C -0.14 -2.21 7.14 71.98 0.51 -1.70 16 9 C -0.14 -3.37 8.15 71.98 0.59 -2.78 16 10 C -0.17 -3.89 7.80 71.98 0.56 -3.33 16 11 C 0.07 2.02 5.15 22.51 0.12 2.13 16 12 O -0.32 -10.48 6.02 -92.40 -0.56 -11.04 16 13 C 0.10 3.76 2.02 31.78 0.06 3.82 16 14 H 0.07 2.60 6.81 -2.39 -0.02 2.58 16 15 C -0.12 -4.38 6.29 31.99 0.20 -4.18 16 16 C 0.15 7.06 5.20 86.86 0.45 7.51 16 17 N -0.62 -33.04 3.37 -691.97 -2.33 -35.37 16 18 C -0.36 -20.94 10.01 84.03 0.84 -20.09 16 19 H 0.06 3.65 8.01 -2.91 -0.02 3.63 16 20 C -0.07 -4.14 5.00 84.86 0.42 -3.72 16 21 N -0.94 -58.11 12.72 21.65 0.28 -57.84 16 22 Si 1.11 52.02 30.03 68.60 2.06 54.08 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.12 5.37 5.04 86.73 0.44 5.80 16 27 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 29 H 0.07 2.32 2.58 -2.39 -0.01 2.31 16 30 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.15 2.19 5.92 -2.91 -0.02 2.17 16 33 H 0.06 0.93 7.86 -2.39 -0.02 0.91 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.93 7.16 -2.39 -0.02 0.91 16 36 H 0.06 1.76 5.59 -2.38 -0.01 1.75 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.24 8.11 -2.39 -0.02 1.22 16 40 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 41 H 0.06 1.72 1.56 -2.39 0.00 1.71 16 42 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 43 H 0.10 3.22 6.19 -2.39 -0.01 3.21 16 44 H 0.03 1.69 7.46 -2.39 -0.02 1.67 16 45 H 0.01 0.51 7.07 -2.39 -0.02 0.50 16 46 H 0.26 16.05 6.03 -92.70 -0.56 15.49 16 47 H 0.02 0.86 7.65 -2.39 -0.02 0.84 16 48 H 0.04 1.70 6.87 -2.39 -0.02 1.68 16 Total: -1.00 -68.26 353.19 5.90 -62.36 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.16 Total: 20.13 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 5.29 Total: -32.32 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -2.05 Total: -93.21 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.56 Total: -11.04 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.06 Total: 54.08 kcal Total: -68.26 5.90 -62.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227992438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.717 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds