Wall clock time and date at job start Tue Mar 31 2020 07:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.96719 * 2 1 4 4 C 1.38240 * 120.11392 * 179.97438 * 3 2 1 5 5 C 1.38173 * 120.05322 * 359.76981 * 4 3 2 6 6 C 1.50702 * 120.03107 * 180.25539 * 5 4 3 7 7 C 1.53003 * 109.46776 * 0.26923 * 6 5 4 8 8 C 1.52998 * 109.47349 * 120.27081 * 6 5 4 9 9 C 1.52993 * 109.46828 * 240.27556 * 6 5 4 10 10 C 1.38711 * 119.93841 * 0.52369 * 5 4 3 11 11 O 1.35909 * 120.05156 * 179.72471 * 10 5 4 12 12 C 1.42898 * 116.99902 * 174.84873 * 11 10 5 13 13 H 1.09001 * 110.77825 * 322.67848 * 12 11 10 14 14 C 1.55156 * 110.71791 * 199.44248 * 12 11 10 15 15 C 1.55131 * 101.48620 * 205.96682 * 14 12 11 16 16 N 1.47425 * 104.71809 * 37.29582 * 15 14 12 17 17 C 1.36936 * 125.64571 * 155.81840 * 16 15 14 18 18 H 1.07997 * 120.00352 * 196.63530 * 17 16 15 19 19 C 1.38820 * 120.00104 * 16.63077 * 17 16 15 20 20 N 1.31616 * 119.99482 * 25.90332 * 19 17 16 21 21 Si 1.86795 * 120.00048 * 205.89777 * 19 17 16 22 22 H 1.48506 * 109.47005 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47529 * 300.00115 * 21 19 17 24 24 H 1.48501 * 109.47005 * 60.00408 * 21 19 17 25 25 C 1.47014 * 108.70713 * 335.55367 * 16 15 14 26 26 C 1.38114 * 119.97662 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47294 * 269.97590 * 1 2 3 28 28 H 1.09001 * 109.47730 * 29.98514 * 1 2 3 29 29 H 1.09005 * 109.47001 * 149.98011 * 1 2 3 30 30 H 1.08005 * 119.94742 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.97692 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.46645 * 60.00568 * 7 6 5 33 33 H 1.08997 * 109.47026 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47458 * 300.00505 * 7 6 5 35 35 H 1.09001 * 109.46803 * 60.00005 * 8 6 5 36 36 H 1.08998 * 109.47190 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47114 * 300.00115 * 8 6 5 38 38 H 1.08998 * 109.47861 * 59.99983 * 9 6 5 39 39 H 1.09008 * 109.46976 * 179.97438 * 9 6 5 40 40 H 1.08997 * 109.47220 * 299.99360 * 9 6 5 41 41 H 1.08997 * 111.00634 * 324.20826 * 14 12 11 42 42 H 1.09005 * 111.00254 * 88.02593 * 14 12 11 43 43 H 1.09004 * 110.50044 * 278.45897 * 15 14 12 44 44 H 1.08996 * 110.34521 * 156.06196 * 15 14 12 45 45 H 0.96996 * 120.00448 * 6.36600 * 20 19 17 46 46 H 1.08993 * 109.88486 * 120.70433 * 25 16 15 47 47 H 1.09004 * 109.88575 * 241.86999 * 25 16 15 48 48 H 1.08005 * 120.03172 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5801 1.2015 0.0005 5 6 4.2752 0.0073 0.0059 6 6 5.7822 0.0118 0.0123 7 6 6.2878 1.4559 0.0183 8 6 6.2891 -0.7113 1.2617 9 6 6.2995 -0.7044 -1.2368 10 6 3.5846 -1.1956 -0.0003 11 8 4.2659 -2.3716 -0.0007 12 6 3.4935 -3.5689 0.1071 13 1 2.6507 -3.4258 0.7834 14 6 4.3792 -4.7531 0.5768 15 6 3.6100 -5.9658 -0.0099 16 7 3.1124 -5.4974 -1.3162 17 6 2.7957 -6.2959 -2.3826 18 1 2.6990 -5.8666 -3.3688 19 6 2.5991 -7.6574 -2.1960 20 7 2.2116 -8.1116 -1.0230 21 14 2.8843 -8.8446 -3.6096 22 1 2.6081 -10.2311 -3.1550 23 1 1.9774 -8.5021 -4.7345 24 1 4.2949 -8.7448 -4.0630 25 6 3.0064 -4.0315 -1.2822 26 6 2.1971 -1.1964 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6563 2.1325 -0.0004 31 1 4.1174 2.1384 0.0010 32 1 5.9192 1.9661 0.9082 33 1 7.3778 1.4591 0.0234 34 1 5.9267 1.9711 -0.8717 35 1 5.9288 -1.7400 1.2573 36 1 7.3791 -0.7085 1.2660 37 1 5.9205 -0.2010 2.1515 38 1 5.9385 -0.1892 -2.1269 39 1 7.3896 -0.7008 -1.2324 40 1 5.9393 -1.7331 -1.2411 41 1 5.3822 -4.6817 0.1561 42 1 4.4169 -4.8052 1.6649 43 1 2.7768 -6.2390 0.6376 44 1 4.2826 -6.8133 -0.1419 45 1 1.9745 -7.4906 -0.3167 46 1 3.6348 -3.5962 -2.0592 47 1 1.9690 -3.7312 -1.4302 48 1 1.6572 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228192182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:26 Heat of formation + Delta-G solvation = -6.428557 kcal Electronic energy + Delta-G solvation = -25926.954439 eV Core-core repulsion = 22561.126670 eV Total energy + Delta-G solvation = -3365.827770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59534 -38.36200 -36.61576 -36.30980 -32.54498 -31.70678 -30.06615 -29.11254 -27.89505 -27.23305 -27.09717 -26.47990 -24.39405 -22.42797 -21.81999 -20.43923 -20.20747 -19.22599 -17.62854 -17.41951 -15.93591 -15.79789 -15.30588 -14.47720 -14.43659 -14.16550 -13.91995 -13.85486 -13.74372 -13.57467 -13.41052 -13.16568 -12.87352 -12.36489 -12.32253 -12.18192 -11.93514 -11.86489 -11.66653 -11.55160 -11.37576 -11.25755 -10.95031 -10.83347 -10.73165 -10.62402 -10.56356 -10.39283 -10.21841 -10.04524 -9.97821 -9.51590 -8.62452 -8.47977 -7.89638 -6.99476 -6.11095 -3.18953 1.38487 1.55844 3.41003 3.49344 3.53946 3.71211 3.79424 4.56683 4.60940 4.77376 4.89227 5.01410 5.04077 5.05478 5.11625 5.19668 5.34395 5.34974 5.41137 5.44300 5.54976 5.56116 5.58065 5.66025 5.69884 5.74793 5.81215 5.83847 5.89779 5.99074 6.03122 6.04966 6.07184 6.10594 6.23041 6.26361 6.35860 6.45501 6.47338 6.51860 6.57748 6.65094 6.70724 6.88511 6.95226 6.97956 7.69624 7.75833 8.44701 8.97920 9.77553 10.30288 11.20806 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.003988 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.669490 B = 7019.136204 C = 7845.846446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 C -0.164 4.164 4 C -0.085 4.085 5 C -0.114 4.114 6 C -0.015 4.015 7 C -0.143 4.143 8 C -0.141 4.141 9 C -0.142 4.142 10 C 0.148 3.852 11 O -0.294 6.294 12 C 0.069 3.931 13 H 0.076 0.924 14 C -0.126 4.126 15 C 0.145 3.855 16 N -0.600 5.600 17 C -0.335 4.335 18 H 0.065 0.935 19 C -0.025 4.025 20 N -0.920 5.920 21 Si 1.066 2.934 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.120 3.880 26 C -0.206 4.206 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.030 0.970 44 H 0.059 0.941 45 H 0.268 0.732 46 H 0.036 0.964 47 H 0.025 0.975 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 19.214 5.159 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.183 4.183 4 C -0.103 4.103 5 C -0.114 4.114 6 C -0.015 4.015 7 C -0.200 4.200 8 C -0.198 4.198 9 C -0.199 4.199 10 C 0.102 3.898 11 O -0.207 6.207 12 C 0.012 3.988 13 H 0.094 0.906 14 C -0.164 4.164 15 C 0.020 3.980 16 N -0.328 5.328 17 C -0.463 4.463 18 H 0.083 0.917 19 C -0.226 4.226 20 N -0.561 5.561 21 Si 0.896 3.104 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.006 4.006 26 C -0.225 4.225 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.043 0.957 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.153 17.498 4.631 18.571 hybrid contribution -0.481 1.662 0.346 1.765 sum 3.672 19.160 4.977 20.133 Atomic orbital electron populations 1.20809 0.91335 1.02831 1.02244 1.19668 0.95827 0.92544 0.97233 1.20835 0.94072 0.97182 1.06184 1.20918 0.93787 0.96995 0.98578 1.19191 0.95124 0.90393 1.06735 1.19271 0.90091 0.95583 0.96548 1.21973 1.00825 0.95660 1.01510 1.21893 1.00183 1.01715 0.95993 1.21908 1.00092 1.01906 0.95979 1.18830 0.90197 0.86007 0.94755 1.86182 1.35462 1.12004 1.87033 1.23575 0.94436 0.82498 0.98263 0.90619 1.22983 0.99645 0.93863 0.99941 1.21620 0.95261 0.93967 0.87193 1.44431 1.76325 0.99830 1.12207 1.19771 1.48270 0.91687 0.86541 0.91679 1.25781 0.98161 0.95998 1.02654 1.70794 1.41628 1.38312 1.05392 0.83506 0.76275 0.76295 0.74354 1.20996 1.21982 1.22031 1.21756 0.97739 0.87324 0.93820 1.21264 0.93194 0.99057 1.08969 0.91197 0.91574 0.91396 0.86433 0.85407 0.92581 0.92543 0.92514 0.90900 0.92888 0.93278 0.93184 0.92920 0.90728 0.90373 0.91133 0.95242 0.92263 0.92008 0.94585 0.95676 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.05 -0.69 5.88 -104.65 -0.62 -1.30 16 3 C -0.16 -1.95 9.70 -39.56 -0.38 -2.34 16 4 C -0.08 -1.01 8.97 -39.60 -0.36 -1.37 16 5 C -0.11 -1.54 4.77 -104.47 -0.50 -2.04 16 6 C -0.01 -0.18 0.75 -155.66 -0.12 -0.30 16 7 C -0.14 -1.36 7.13 37.16 0.27 -1.10 16 8 C -0.14 -1.68 8.26 37.16 0.31 -1.37 16 9 C -0.14 -1.82 8.26 37.15 0.31 -1.52 16 10 C 0.15 2.28 6.23 -39.22 -0.24 2.04 16 11 O -0.29 -4.85 5.54 -19.45 -0.11 -4.95 16 12 C 0.07 1.23 2.75 -24.90 -0.07 1.16 16 13 H 0.08 1.29 6.51 -51.93 -0.34 0.95 16 14 C -0.13 -2.29 6.82 -24.46 -0.17 -2.46 16 15 C 0.15 3.35 5.26 -2.41 -0.01 3.34 16 16 N -0.60 -15.41 3.30 -169.94 -0.56 -15.97 16 17 C -0.34 -9.58 10.05 -15.06 -0.15 -9.74 16 18 H 0.07 1.87 7.95 -52.49 -0.42 1.45 16 19 C -0.02 -0.71 5.12 -17.43 -0.09 -0.79 16 20 N -0.92 -27.70 12.90 55.49 0.72 -26.99 16 21 Si 1.07 25.46 29.99 -169.99 -5.10 20.36 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.12 2.59 6.57 -3.07 -0.02 2.57 16 26 C -0.21 -3.10 8.46 -39.44 -0.33 -3.43 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 31 H 0.13 1.23 5.89 -52.49 -0.31 0.92 16 32 H 0.06 0.49 7.53 -51.93 -0.39 0.10 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.52 7.50 -51.93 -0.39 0.13 16 35 H 0.07 1.00 6.14 -51.93 -0.32 0.68 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.07 1.13 6.14 -51.93 -0.32 0.81 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.03 0.71 6.76 -51.93 -0.35 0.36 16 44 H 0.06 1.49 7.89 -51.93 -0.41 1.08 16 45 H 0.27 8.04 5.86 -40.82 -0.24 7.80 16 46 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 47 H 0.03 0.56 7.52 -51.93 -0.39 0.17 16 48 H 0.13 2.03 5.39 -52.48 -0.28 1.75 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -30.85 366.53 -9.36 -40.21 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.01 Total: 1.32 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -1.82 Total: -19.50 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.15 Total: -42.96 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.11 Total: -4.95 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.10 Total: 20.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.85 -9.36 -40.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228192182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.780 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds