Wall clock time and date at job start Tue Mar 31 2020 07:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.96719 * 2 1 4 4 C 1.38240 * 120.11392 * 179.97438 * 3 2 1 5 5 C 1.38173 * 120.05322 * 359.76981 * 4 3 2 6 6 C 1.50702 * 120.03107 * 180.25539 * 5 4 3 7 7 C 1.53003 * 109.46776 * 0.26923 * 6 5 4 8 8 C 1.52998 * 109.47349 * 120.27081 * 6 5 4 9 9 C 1.52993 * 109.46828 * 240.27556 * 6 5 4 10 10 C 1.38711 * 119.93841 * 0.52369 * 5 4 3 11 11 O 1.35909 * 120.05156 * 179.72471 * 10 5 4 12 12 C 1.42898 * 116.99902 * 174.84873 * 11 10 5 13 13 H 1.09001 * 110.77825 * 322.67848 * 12 11 10 14 14 C 1.55156 * 110.71791 * 199.44248 * 12 11 10 15 15 C 1.55131 * 101.48620 * 205.96682 * 14 12 11 16 16 N 1.47425 * 104.71809 * 37.29582 * 15 14 12 17 17 C 1.36936 * 125.64571 * 155.81840 * 16 15 14 18 18 H 1.07997 * 120.00352 * 196.63530 * 17 16 15 19 19 C 1.38820 * 120.00104 * 16.63077 * 17 16 15 20 20 N 1.31616 * 119.99482 * 25.90332 * 19 17 16 21 21 Si 1.86795 * 120.00048 * 205.89777 * 19 17 16 22 22 H 1.48506 * 109.47005 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47529 * 300.00115 * 21 19 17 24 24 H 1.48501 * 109.47005 * 60.00408 * 21 19 17 25 25 C 1.47014 * 108.70713 * 335.55367 * 16 15 14 26 26 C 1.38114 * 119.97662 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47294 * 269.97590 * 1 2 3 28 28 H 1.09001 * 109.47730 * 29.98514 * 1 2 3 29 29 H 1.09005 * 109.47001 * 149.98011 * 1 2 3 30 30 H 1.08005 * 119.94742 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.97692 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.46645 * 60.00568 * 7 6 5 33 33 H 1.08997 * 109.47026 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47458 * 300.00505 * 7 6 5 35 35 H 1.09001 * 109.46803 * 60.00005 * 8 6 5 36 36 H 1.08998 * 109.47190 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47114 * 300.00115 * 8 6 5 38 38 H 1.08998 * 109.47861 * 59.99983 * 9 6 5 39 39 H 1.09008 * 109.46976 * 179.97438 * 9 6 5 40 40 H 1.08997 * 109.47220 * 299.99360 * 9 6 5 41 41 H 1.08997 * 111.00634 * 324.20826 * 14 12 11 42 42 H 1.09005 * 111.00254 * 88.02593 * 14 12 11 43 43 H 1.09004 * 110.50044 * 278.45897 * 15 14 12 44 44 H 1.08996 * 110.34521 * 156.06196 * 15 14 12 45 45 H 0.96996 * 120.00448 * 6.36600 * 20 19 17 46 46 H 1.08993 * 109.88486 * 120.70433 * 25 16 15 47 47 H 1.09004 * 109.88575 * 241.86999 * 25 16 15 48 48 H 1.08005 * 120.03172 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5801 1.2015 0.0005 5 6 4.2752 0.0073 0.0059 6 6 5.7822 0.0118 0.0123 7 6 6.2878 1.4559 0.0183 8 6 6.2891 -0.7113 1.2617 9 6 6.2995 -0.7044 -1.2368 10 6 3.5846 -1.1956 -0.0003 11 8 4.2659 -2.3716 -0.0007 12 6 3.4935 -3.5689 0.1071 13 1 2.6507 -3.4258 0.7834 14 6 4.3792 -4.7531 0.5768 15 6 3.6100 -5.9658 -0.0099 16 7 3.1124 -5.4974 -1.3162 17 6 2.7957 -6.2959 -2.3826 18 1 2.6990 -5.8666 -3.3688 19 6 2.5991 -7.6574 -2.1960 20 7 2.2116 -8.1116 -1.0230 21 14 2.8843 -8.8446 -3.6096 22 1 2.6081 -10.2311 -3.1550 23 1 1.9774 -8.5021 -4.7345 24 1 4.2949 -8.7448 -4.0630 25 6 3.0064 -4.0315 -1.2822 26 6 2.1971 -1.1964 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6563 2.1325 -0.0004 31 1 4.1174 2.1384 0.0010 32 1 5.9192 1.9661 0.9082 33 1 7.3778 1.4591 0.0234 34 1 5.9267 1.9711 -0.8717 35 1 5.9288 -1.7400 1.2573 36 1 7.3791 -0.7085 1.2660 37 1 5.9205 -0.2010 2.1515 38 1 5.9385 -0.1892 -2.1269 39 1 7.3896 -0.7008 -1.2324 40 1 5.9393 -1.7331 -1.2411 41 1 5.3822 -4.6817 0.1561 42 1 4.4169 -4.8052 1.6649 43 1 2.7768 -6.2390 0.6376 44 1 4.2826 -6.8133 -0.1419 45 1 1.9745 -7.4906 -0.3167 46 1 3.6348 -3.5962 -2.0592 47 1 1.9690 -3.7312 -1.4302 48 1 1.6572 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228192182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:25 Heat of formation + Delta-G solvation = -21.252385 kcal Electronic energy + Delta-G solvation = -25927.597249 eV Core-core repulsion = 22561.126670 eV Total energy + Delta-G solvation = -3366.470579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73551 -39.76480 -37.89844 -37.54705 -34.52333 -32.66880 -31.45490 -30.71329 -29.44372 -28.16465 -28.06606 -27.51459 -26.39582 -23.62828 -22.91347 -22.15324 -21.72324 -20.28819 -19.66638 -18.69315 -17.12012 -16.91197 -16.70876 -16.19664 -15.67618 -15.55471 -15.22039 -15.14423 -14.98709 -14.85060 -14.59206 -14.38632 -14.24764 -14.01388 -13.40014 -13.24627 -13.03362 -12.84940 -12.75080 -12.72038 -12.60328 -12.57448 -12.48126 -12.45795 -12.21114 -11.92198 -11.83807 -11.76888 -11.65706 -11.54394 -11.50882 -11.22774 -10.62185 -9.65378 -9.13129 -8.98220 -8.37942 -5.43255 0.37077 0.51382 1.55336 1.63367 1.82873 2.10863 2.60413 2.77376 3.12867 3.41297 3.51472 3.67423 3.74016 3.81127 3.89002 3.96779 4.12807 4.17754 4.18323 4.31633 4.39586 4.46781 4.48561 4.64383 4.70510 4.71811 4.76679 4.79596 4.80552 4.82561 4.89987 4.92412 4.94814 4.95582 5.05290 5.10430 5.11600 5.15745 5.23822 5.31336 5.39684 5.48507 5.55468 5.57070 5.65523 5.71597 5.94874 6.24346 6.47565 6.80786 7.61107 8.16830 8.93388 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.003988 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.669490 B = 7019.136204 C = 7845.846446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.159 4.159 4 C -0.082 4.082 5 C -0.121 4.121 6 C -0.016 4.016 7 C -0.138 4.138 8 C -0.138 4.138 9 C -0.139 4.139 10 C 0.119 3.881 11 O -0.294 6.294 12 C 0.088 3.912 13 H 0.085 0.915 14 C -0.109 4.109 15 C 0.148 3.852 16 N -0.622 5.622 17 C -0.353 4.353 18 H 0.056 0.944 19 C -0.072 4.072 20 N -0.943 5.943 21 Si 1.118 2.882 22 H -0.287 1.287 23 H -0.275 1.275 24 H -0.280 1.280 25 C 0.122 3.878 26 C -0.226 4.226 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.017 0.983 44 H 0.032 0.968 45 H 0.257 0.743 46 H 0.024 0.976 47 H 0.017 0.983 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 21.959 5.439 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.177 4.177 4 C -0.100 4.100 5 C -0.121 4.121 6 C -0.016 4.016 7 C -0.195 4.195 8 C -0.195 4.195 9 C -0.196 4.196 10 C 0.074 3.926 11 O -0.207 6.207 12 C 0.031 3.969 13 H 0.102 0.898 14 C -0.147 4.147 15 C 0.023 3.977 16 N -0.350 5.350 17 C -0.481 4.481 18 H 0.074 0.926 19 C -0.268 4.268 20 N -0.586 5.586 21 Si 0.941 3.059 22 H -0.212 1.212 23 H -0.200 1.200 24 H -0.207 1.207 25 C -0.003 4.003 26 C -0.245 4.245 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.166 0.834 31 H 0.175 0.825 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.035 0.965 44 H 0.050 0.950 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.035 0.965 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.859 20.287 4.917 21.432 hybrid contribution -0.736 0.941 0.249 1.220 sum 4.123 21.228 5.166 22.233 Atomic orbital electron populations 1.20847 0.89801 1.03287 1.03141 1.19993 0.97138 0.92330 0.96755 1.21233 0.94327 0.97819 1.04325 1.21308 0.94081 0.97455 0.97140 1.19505 0.96138 0.90160 1.06333 1.19328 0.89193 0.97267 0.95834 1.21941 1.01563 0.93633 1.02403 1.21862 1.00973 1.00421 0.96281 1.21872 1.00944 1.00199 0.96625 1.19143 0.90619 0.86056 0.96738 1.86186 1.34971 1.11911 1.87602 1.23199 0.94636 0.83372 0.95668 0.89756 1.22837 0.98807 0.91434 1.01646 1.21534 0.94693 0.95204 0.86279 1.44684 1.76475 1.01342 1.12498 1.20022 1.48187 0.92621 0.87245 0.92569 1.27217 0.97519 0.97803 1.04256 1.70898 1.43584 1.38084 1.06017 0.82829 0.77060 0.73929 0.72038 1.21235 1.20036 1.20654 1.21777 0.97121 0.85295 0.96157 1.21292 0.93307 0.99408 1.10511 0.90017 0.89499 0.92562 0.83369 0.82484 0.91385 0.91471 0.91839 0.93120 0.91597 0.92690 0.93398 0.91517 0.93686 0.90174 0.87791 0.96537 0.94973 0.93223 0.95827 0.96515 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 10.01 71.24 0.71 -1.52 16 2 C -0.06 -1.53 5.88 -19.88 -0.12 -1.65 16 3 C -0.16 -3.29 9.70 22.28 0.22 -3.07 16 4 C -0.08 -1.71 8.97 22.25 0.20 -1.51 16 5 C -0.12 -3.08 4.77 -19.77 -0.09 -3.17 16 6 C -0.02 -0.36 0.75 -52.93 -0.04 -0.40 16 7 C -0.14 -2.17 7.13 71.98 0.51 -1.65 16 8 C -0.14 -3.07 8.26 71.98 0.59 -2.48 16 9 C -0.14 -3.46 8.26 71.98 0.59 -2.87 16 10 C 0.12 3.66 6.23 22.51 0.14 3.80 16 11 O -0.29 -9.81 5.54 -92.53 -0.51 -10.33 16 12 C 0.09 3.23 2.75 31.78 0.09 3.32 16 13 H 0.08 2.94 6.51 -2.39 -0.02 2.93 16 14 C -0.11 -4.00 6.82 32.06 0.22 -3.78 16 15 C 0.15 7.11 5.26 86.93 0.46 7.57 16 16 N -0.62 -33.29 3.30 -691.56 -2.28 -35.57 16 17 C -0.35 -20.86 10.05 84.04 0.84 -20.01 16 18 H 0.06 3.33 7.95 -2.91 -0.02 3.31 16 19 C -0.07 -4.21 5.12 84.86 0.43 -3.78 16 20 N -0.94 -58.48 12.90 21.65 0.28 -58.20 16 21 Si 1.12 52.03 29.99 68.60 2.06 54.09 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.12 5.53 6.57 86.73 0.57 6.10 16 26 C -0.23 -6.84 8.46 22.36 0.19 -6.65 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 29 H 0.06 1.22 8.08 -2.38 -0.02 1.20 16 30 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.16 2.31 5.89 -2.91 -0.02 2.30 16 32 H 0.07 0.92 7.53 -2.39 -0.02 0.90 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.92 7.50 -2.39 -0.02 0.90 16 35 H 0.05 1.35 6.14 -2.39 -0.01 1.34 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.04 1.38 6.14 -2.39 -0.01 1.37 16 41 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 43 H 0.02 0.85 6.76 -2.38 -0.02 0.83 16 44 H 0.03 1.68 7.89 -2.39 -0.02 1.67 16 45 H 0.26 16.07 5.86 -92.71 -0.54 15.53 16 46 H 0.02 1.12 8.06 -2.39 -0.02 1.10 16 47 H 0.02 0.78 7.52 -2.38 -0.02 0.77 16 48 H 0.11 3.70 5.39 -2.91 -0.02 3.68 16 Total: -1.00 -69.04 366.53 6.22 -62.83 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.15 Total: 18.94 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 5.52 Total: -31.76 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -2.00 Total: -93.77 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.51 Total: -10.33 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.06 Total: 54.09 kcal Total: -69.04 6.22 -62.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228192182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.574 kcal (2) G-P(sol) polarization free energy of solvation -69.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds