Wall clock time and date at job start Tue Mar 31 2020 08:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46878 * 2 1 4 4 C 1.53002 * 109.47484 * 59.99891 * 3 2 1 5 5 C 1.53003 * 109.46964 * 299.99582 * 3 2 1 6 6 C 1.50707 * 109.46883 * 179.97438 * 3 2 1 7 7 C 1.38160 * 120.02699 * 0.02562 * 6 3 2 8 8 C 1.38242 * 120.05409 * 179.97438 * 7 6 3 9 9 C 1.38288 * 120.11300 * 0.02562 * 8 7 6 10 10 C 1.38129 * 120.05396 * 0.02562 * 9 8 7 11 11 C 1.38714 * 120.02287 * 179.97438 * 6 3 2 12 12 O 1.35896 * 120.05912 * 0.04743 * 11 6 3 13 13 C 1.42901 * 116.99866 * 185.32734 * 12 11 6 14 14 H 1.08994 * 110.64412 * 38.14840 * 13 12 11 15 15 C 1.55156 * 110.71927 * 161.48901 * 13 12 11 16 16 C 1.54911 * 101.58129 * 153.86177 * 15 13 12 17 17 N 1.47418 * 104.83474 * 322.99272 * 16 15 13 18 18 C 1.36940 * 125.65159 * 204.16542 * 17 16 15 19 19 H 1.07995 * 120.00372 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99718 * 359.95603 * 18 17 16 21 21 N 1.31621 * 119.99946 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46963 * 59.99567 * 22 20 18 24 24 H 1.48496 * 109.47351 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46848 * 299.99657 * 22 20 18 26 26 C 1.47028 * 108.70625 * 24.12497 * 17 16 15 27 27 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47304 * 300.00099 * 1 2 3 29 29 H 1.09003 * 109.46965 * 60.00697 * 1 2 3 30 30 H 1.09002 * 109.47064 * 240.00142 * 2 1 3 31 31 H 1.08995 * 109.47023 * 119.99609 * 2 1 3 32 32 H 1.08998 * 109.47434 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.46714 * 300.00310 * 4 3 2 34 34 H 1.09000 * 109.46895 * 59.99574 * 4 3 2 35 35 H 1.08994 * 109.47370 * 300.00192 * 5 3 2 36 36 H 1.09002 * 109.47193 * 60.00357 * 5 3 2 37 37 H 1.09008 * 109.47147 * 179.97438 * 5 3 2 38 38 H 1.07997 * 119.97493 * 0.24764 * 7 6 3 39 39 H 1.07997 * 119.94891 * 179.97438 * 8 7 6 40 40 H 1.08002 * 119.97454 * 179.97438 * 9 8 7 41 41 H 1.08004 * 120.02445 * 179.97438 * 10 9 8 42 42 H 1.09003 * 111.00289 * 271.93544 * 15 13 12 43 43 H 1.09001 * 111.00458 * 35.78959 * 15 13 12 44 44 H 1.08999 * 110.36827 * 204.14615 * 16 15 13 45 45 H 1.09003 * 110.45889 * 81.87520 * 16 15 13 46 46 H 0.97006 * 120.00200 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.88355 * 239.53294 * 26 17 16 48 48 H 1.08996 * 110.01156 * 118.42739 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5470 1.4425 0.0006 7 6 4.2384 0.2463 0.0006 8 6 5.6208 0.2457 0.0006 9 6 6.3151 1.4416 0.0013 10 6 5.6286 2.6402 0.0024 11 6 4.2411 2.6435 0.0002 12 8 3.5633 3.8214 0.0002 13 6 4.3385 5.0160 -0.1185 14 1 5.1668 4.8693 -0.8116 15 6 3.4484 6.2059 -0.5646 16 6 4.2295 7.4124 0.0134 17 7 4.7572 6.9366 1.3050 18 6 5.0980 7.7289 2.3687 19 1 5.4770 7.2817 3.2757 20 6 4.9565 9.1071 2.2809 21 7 4.4953 9.6522 1.1752 22 14 5.4219 10.1880 3.7315 23 1 6.8589 9.9946 4.0520 24 1 5.1796 11.6117 3.3857 25 1 4.5976 9.8171 4.9097 26 6 4.8562 5.4703 1.2626 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8928 3.1916 1.2490 33 1 0.4399 2.1637 1.2492 34 1 1.8932 1.6500 2.1392 35 1 1.8933 1.6499 -2.1392 36 1 0.4399 2.1637 -1.2494 37 1 1.8929 3.1916 -1.2491 38 1 3.6984 -0.6890 -0.0040 39 1 6.1595 -0.6903 0.0010 40 1 7.3952 1.4385 0.0017 41 1 6.1713 3.5739 0.0033 42 1 3.3890 6.2634 -1.6515 43 1 2.4540 6.1369 -0.1236 44 1 3.5608 8.2596 0.1656 45 1 5.0475 7.6904 -0.6513 46 1 4.3967 10.6152 1.1137 47 1 4.2420 5.0343 2.0505 48 1 5.8943 5.1627 1.3888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231310066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:31 Heat of formation + Delta-G solvation = 2.529202 kcal Electronic energy + Delta-G solvation = -25884.371946 eV Core-core repulsion = 22518.932614 eV Total energy + Delta-G solvation = -3365.439332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53156 -38.32121 -36.75156 -36.01821 -32.36507 -31.06336 -30.23345 -29.35548 -28.71157 -27.37969 -27.09466 -24.79383 -24.31228 -22.70861 -21.70161 -20.28387 -20.09441 -18.77373 -17.77826 -16.99739 -15.98276 -15.70838 -15.15289 -14.72800 -14.71766 -14.42166 -14.31486 -13.89654 -13.72979 -13.51108 -13.14753 -12.89903 -12.47105 -12.27371 -12.02740 -11.94623 -11.79185 -11.72139 -11.60579 -11.37445 -11.25084 -11.09104 -11.01983 -10.80920 -10.65770 -10.57035 -10.40785 -10.23346 -10.14564 -10.02310 -9.79944 -9.62018 -8.72594 -8.69208 -7.88685 -6.89893 -5.69820 -3.12020 1.44884 1.60424 3.39133 3.42927 3.44193 3.52913 3.88717 4.46389 4.61266 4.75220 4.94952 5.05547 5.09519 5.19003 5.26372 5.32304 5.40883 5.42350 5.43911 5.47856 5.51987 5.61947 5.65052 5.68688 5.82999 5.87921 5.89021 5.94809 5.98987 6.03660 6.13951 6.17534 6.22477 6.25465 6.40951 6.43330 6.48009 6.53103 6.54210 6.58880 6.64018 6.66878 6.75320 7.02362 7.41665 7.57384 7.74337 7.82691 8.29890 9.16853 9.77235 10.40522 11.34418 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.003692 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.808967 B = 7581.558298 C = 8176.167836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.010 4.010 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.109 4.109 7 C -0.089 4.089 8 C -0.166 4.166 9 C -0.086 4.086 10 C -0.206 4.206 11 C 0.146 3.854 12 O -0.294 6.294 13 C 0.068 3.932 14 H 0.074 0.926 15 C -0.133 4.133 16 C 0.153 3.847 17 N -0.600 5.600 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.119 3.881 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.016 0.984 46 H 0.254 0.746 47 H 0.034 0.966 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 -18.971 -5.350 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.010 4.010 4 C -0.201 4.201 5 C -0.200 4.200 6 C -0.110 4.110 7 C -0.107 4.107 8 C -0.184 4.184 9 C -0.104 4.104 10 C -0.225 4.225 11 C 0.099 3.901 12 O -0.207 6.207 13 C 0.012 3.988 14 H 0.092 0.908 15 C -0.172 4.172 16 C 0.028 3.972 17 N -0.328 5.328 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.747 3.253 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.211 1.211 26 C -0.007 4.007 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.186 -18.686 -5.276 19.863 hybrid contribution 0.779 0.540 0.739 1.202 sum -3.406 -18.146 -4.537 19.013 Atomic orbital electron populations 1.21901 0.95909 1.01174 1.02306 1.21673 0.95904 0.96025 1.01596 1.19281 0.89841 0.95224 0.96645 1.21958 1.00372 1.01844 0.95877 1.21946 1.00430 1.01701 0.95896 1.19225 0.95177 0.90451 1.06111 1.20924 0.93939 0.96953 0.98917 1.20948 0.94216 0.97759 1.05491 1.20907 0.99562 0.91969 0.98002 1.21428 0.93401 0.99614 1.08053 1.18883 0.90322 0.86148 0.94703 1.86200 1.35680 1.12034 1.86810 1.23652 0.94603 0.82519 0.98070 0.90811 1.23167 0.99732 0.94421 0.99857 1.21988 0.96104 0.94115 0.84993 1.44364 1.76098 0.99052 1.13256 1.19036 1.36161 0.87923 0.92133 0.90471 1.24787 1.01554 0.96448 0.97686 1.69749 1.51691 1.10220 1.25503 0.86124 0.78207 0.79551 0.81456 1.21177 1.21486 1.21073 1.21723 0.97496 0.87378 0.94110 0.93195 0.92298 0.92374 0.91995 0.91938 0.90692 0.92587 0.93265 0.93363 0.92553 0.90850 0.85533 0.86496 0.86274 0.85122 0.91609 0.90821 0.86921 0.96645 0.93558 0.94816 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.21 37.16 0.34 -1.02 16 2 C -0.11 -1.11 3.65 -26.73 -0.10 -1.21 16 3 C -0.01 -0.12 0.52 -155.66 -0.08 -0.20 16 4 C -0.14 -1.86 7.90 37.16 0.29 -1.56 16 5 C -0.14 -1.72 7.91 37.16 0.29 -1.43 16 6 C -0.11 -1.47 4.77 -104.47 -0.50 -1.97 16 7 C -0.09 -1.06 8.97 -39.61 -0.36 -1.42 16 8 C -0.17 -1.93 10.04 -39.56 -0.40 -2.33 16 9 C -0.09 -1.10 10.04 -39.60 -0.40 -1.49 16 10 C -0.21 -3.05 8.77 -39.43 -0.35 -3.40 16 11 C 0.15 2.24 6.22 -39.22 -0.24 1.99 16 12 O -0.29 -4.91 5.54 -19.41 -0.11 -5.02 16 13 C 0.07 1.23 2.77 -24.89 -0.07 1.16 16 14 H 0.07 1.27 6.59 -51.93 -0.34 0.93 16 15 C -0.13 -2.54 6.81 -24.58 -0.17 -2.71 16 16 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 17 N -0.60 -15.47 3.39 -170.07 -0.58 -16.05 16 18 C -0.22 -6.29 10.27 -15.06 -0.15 -6.44 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 22 Si 0.92 22.02 29.55 -169.99 -5.02 16.99 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.12 2.56 6.51 -3.06 -0.02 2.54 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 29 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 30 H 0.06 0.57 7.51 -51.93 -0.39 0.18 16 31 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 32 H 0.07 1.15 6.14 -51.93 -0.32 0.84 16 33 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 37 H 0.07 1.03 6.14 -51.92 -0.32 0.71 16 38 H 0.13 1.22 5.89 -52.49 -0.31 0.91 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.99 5.31 -52.48 -0.28 1.71 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.11 3.03 5.87 -51.93 -0.31 2.72 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 48 H 0.02 0.51 7.42 -51.93 -0.39 0.12 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -29.26 358.92 -9.47 -38.73 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.72 Total: 2.19 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.01 Total: -16.18 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.02 Total: -42.12 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.11 Total: -5.02 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.26 -9.47 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231310066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.263 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds