Wall clock time and date at job start Tue Mar 31 2020 08:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46878 * 2 1 4 4 C 1.53002 * 109.47484 * 59.99891 * 3 2 1 5 5 C 1.53003 * 109.46964 * 299.99582 * 3 2 1 6 6 C 1.50707 * 109.46883 * 179.97438 * 3 2 1 7 7 C 1.38160 * 120.02699 * 0.02562 * 6 3 2 8 8 C 1.38242 * 120.05409 * 179.97438 * 7 6 3 9 9 C 1.38288 * 120.11300 * 0.02562 * 8 7 6 10 10 C 1.38129 * 120.05396 * 0.02562 * 9 8 7 11 11 C 1.38714 * 120.02287 * 179.97438 * 6 3 2 12 12 O 1.35896 * 120.05912 * 0.04743 * 11 6 3 13 13 C 1.42901 * 116.99866 * 185.32734 * 12 11 6 14 14 H 1.08994 * 110.64412 * 38.14840 * 13 12 11 15 15 C 1.55156 * 110.71927 * 161.48901 * 13 12 11 16 16 C 1.54911 * 101.58129 * 153.86177 * 15 13 12 17 17 N 1.47418 * 104.83474 * 322.99272 * 16 15 13 18 18 C 1.36940 * 125.65159 * 204.16542 * 17 16 15 19 19 H 1.07995 * 120.00372 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99718 * 359.95603 * 18 17 16 21 21 N 1.31621 * 119.99946 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46963 * 59.99567 * 22 20 18 24 24 H 1.48496 * 109.47351 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46848 * 299.99657 * 22 20 18 26 26 C 1.47028 * 108.70625 * 24.12497 * 17 16 15 27 27 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47304 * 300.00099 * 1 2 3 29 29 H 1.09003 * 109.46965 * 60.00697 * 1 2 3 30 30 H 1.09002 * 109.47064 * 240.00142 * 2 1 3 31 31 H 1.08995 * 109.47023 * 119.99609 * 2 1 3 32 32 H 1.08998 * 109.47434 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.46714 * 300.00310 * 4 3 2 34 34 H 1.09000 * 109.46895 * 59.99574 * 4 3 2 35 35 H 1.08994 * 109.47370 * 300.00192 * 5 3 2 36 36 H 1.09002 * 109.47193 * 60.00357 * 5 3 2 37 37 H 1.09008 * 109.47147 * 179.97438 * 5 3 2 38 38 H 1.07997 * 119.97493 * 0.24764 * 7 6 3 39 39 H 1.07997 * 119.94891 * 179.97438 * 8 7 6 40 40 H 1.08002 * 119.97454 * 179.97438 * 9 8 7 41 41 H 1.08004 * 120.02445 * 179.97438 * 10 9 8 42 42 H 1.09003 * 111.00289 * 271.93544 * 15 13 12 43 43 H 1.09001 * 111.00458 * 35.78959 * 15 13 12 44 44 H 1.08999 * 110.36827 * 204.14615 * 16 15 13 45 45 H 1.09003 * 110.45889 * 81.87520 * 16 15 13 46 46 H 0.97006 * 120.00200 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.88355 * 239.53294 * 26 17 16 48 48 H 1.08996 * 110.01156 * 118.42739 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5470 1.4425 0.0006 7 6 4.2384 0.2463 0.0006 8 6 5.6208 0.2457 0.0006 9 6 6.3151 1.4416 0.0013 10 6 5.6286 2.6402 0.0024 11 6 4.2411 2.6435 0.0002 12 8 3.5633 3.8214 0.0002 13 6 4.3385 5.0160 -0.1185 14 1 5.1668 4.8693 -0.8116 15 6 3.4484 6.2059 -0.5646 16 6 4.2295 7.4124 0.0134 17 7 4.7572 6.9366 1.3050 18 6 5.0980 7.7289 2.3687 19 1 5.4770 7.2817 3.2757 20 6 4.9565 9.1071 2.2809 21 7 4.4953 9.6522 1.1752 22 14 5.4219 10.1880 3.7315 23 1 6.8589 9.9946 4.0520 24 1 5.1796 11.6117 3.3857 25 1 4.5976 9.8171 4.9097 26 6 4.8562 5.4703 1.2626 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8928 3.1916 1.2490 33 1 0.4399 2.1637 1.2492 34 1 1.8932 1.6500 2.1392 35 1 1.8933 1.6499 -2.1392 36 1 0.4399 2.1637 -1.2494 37 1 1.8929 3.1916 -1.2491 38 1 3.6984 -0.6890 -0.0040 39 1 6.1595 -0.6903 0.0010 40 1 7.3952 1.4385 0.0017 41 1 6.1713 3.5739 0.0033 42 1 3.3890 6.2634 -1.6515 43 1 2.4540 6.1369 -0.1236 44 1 3.5608 8.2596 0.1656 45 1 5.0475 7.6904 -0.6513 46 1 4.3967 10.6152 1.1137 47 1 4.2420 5.0343 2.0505 48 1 5.8943 5.1627 1.3888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231310066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:30 Heat of formation + Delta-G solvation = -10.922272 kcal Electronic energy + Delta-G solvation = -25884.955246 eV Core-core repulsion = 22518.932614 eV Total energy + Delta-G solvation = -3366.022632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65467 -39.65819 -37.89832 -37.42426 -34.32247 -32.00048 -31.46197 -30.91587 -29.79468 -29.08235 -28.08910 -26.58309 -25.35531 -23.82194 -22.84202 -22.06981 -21.53875 -19.77457 -19.04504 -18.90641 -17.13663 -16.92355 -16.64044 -16.57489 -15.54825 -15.52322 -15.48075 -15.28695 -15.12087 -14.58546 -14.36047 -14.20732 -14.06966 -13.66940 -13.41312 -13.15934 -13.00783 -12.87347 -12.80675 -12.67653 -12.62182 -12.51544 -12.27271 -12.17022 -12.08608 -12.00102 -11.85281 -11.62783 -11.46153 -11.39760 -11.27171 -11.05273 -10.78969 -9.73008 -9.01177 -8.94884 -7.82485 -5.28234 0.44310 0.57276 1.45221 1.48521 1.55083 2.21317 2.48148 2.87351 3.28195 3.60113 3.65702 3.70314 3.85576 3.92494 4.00546 4.13937 4.14581 4.20137 4.33609 4.48700 4.54244 4.55276 4.57547 4.59799 4.69369 4.77888 4.83383 4.87405 4.92708 4.94396 5.00498 5.06008 5.10625 5.12071 5.18442 5.22988 5.29146 5.35368 5.39876 5.52572 5.54454 5.58119 5.58985 5.65762 5.71876 5.77332 5.99024 6.24032 6.55919 7.04750 7.69813 8.32963 9.19473 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.003692 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.808967 B = 7581.558298 C = 8176.167836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.010 4.010 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.116 4.116 7 C -0.088 4.088 8 C -0.158 4.158 9 C -0.093 4.093 10 C -0.224 4.224 11 C 0.115 3.885 12 O -0.297 6.297 13 C 0.087 3.913 14 H 0.085 0.915 15 C -0.118 4.118 16 C 0.156 3.844 17 N -0.622 5.622 18 C -0.248 4.248 19 H 0.077 0.923 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.983 3.017 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.277 1.277 26 C 0.121 3.879 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.082 0.918 45 H -0.002 1.002 46 H 0.250 0.750 47 H 0.021 0.979 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -21.759 -5.534 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.010 4.010 4 C -0.197 4.197 5 C -0.197 4.197 6 C -0.117 4.117 7 C -0.106 4.106 8 C -0.176 4.176 9 C -0.111 4.111 10 C -0.243 4.243 11 C 0.070 3.930 12 O -0.210 6.210 13 C 0.030 3.970 14 H 0.103 0.897 15 C -0.156 4.156 16 C 0.031 3.969 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.095 0.905 20 C -0.253 4.253 21 N -0.595 5.595 22 Si 0.810 3.190 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.203 1.203 26 C -0.004 4.004 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.016 0.984 46 H 0.060 0.940 47 H 0.039 0.961 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.259 -21.510 -5.463 22.598 hybrid contribution 0.827 1.290 0.807 1.732 sum -3.432 -20.220 -4.656 21.031 Atomic orbital electron populations 1.21893 0.95157 1.02100 1.02076 1.21644 0.96543 0.94136 1.02393 1.19313 0.89082 0.96757 0.95806 1.21911 1.01121 1.00105 0.96571 1.21907 1.01143 1.00353 0.96262 1.19526 0.96090 0.90315 1.05744 1.21299 0.94344 0.97307 0.97633 1.21359 0.94353 0.98543 1.03363 1.21200 1.00720 0.91652 0.97505 1.21476 0.93365 1.00151 1.09280 1.19190 0.90867 0.86069 0.96843 1.86198 1.35285 1.12024 1.87460 1.23272 0.94570 0.83195 0.95933 0.89675 1.22952 0.98737 0.92641 1.01315 1.21764 0.95279 0.95319 0.84521 1.44651 1.76223 1.00768 1.13311 1.19385 1.36438 0.88799 0.92999 0.90479 1.25636 1.01720 0.97613 1.00367 1.69993 1.52332 1.10075 1.27133 0.85097 0.78111 0.77388 0.78385 1.20395 1.21481 1.20333 1.21782 0.97441 0.85207 0.96008 0.91719 0.92781 0.92376 0.90869 0.91346 0.93721 0.91353 0.93457 0.92782 0.91393 0.93186 0.82775 0.83336 0.84353 0.86411 0.88665 0.91184 0.90008 0.98373 0.93994 0.96098 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.21 71.98 0.66 -1.61 16 2 C -0.11 -1.80 3.65 30.59 0.11 -1.69 16 3 C -0.01 -0.21 0.52 -52.92 -0.03 -0.24 16 4 C -0.14 -3.55 7.90 71.98 0.57 -2.99 16 5 C -0.14 -3.20 7.91 71.98 0.57 -2.63 16 6 C -0.12 -2.95 4.77 -19.77 -0.09 -3.05 16 7 C -0.09 -1.82 8.97 22.25 0.20 -1.62 16 8 C -0.16 -3.15 10.04 22.28 0.22 -2.92 16 9 C -0.09 -2.18 10.04 22.26 0.22 -1.95 16 10 C -0.22 -6.53 8.77 22.37 0.20 -6.33 16 11 C 0.12 3.51 6.22 22.51 0.14 3.65 16 12 O -0.30 -10.03 5.54 -92.38 -0.51 -10.54 16 13 C 0.09 3.22 2.77 31.78 0.09 3.31 16 14 H 0.09 2.95 6.59 -2.39 -0.02 2.94 16 15 C -0.12 -4.57 6.81 31.99 0.22 -4.36 16 16 C 0.16 7.79 5.89 86.86 0.51 8.30 16 17 N -0.62 -33.25 3.39 -691.98 -2.35 -35.60 16 18 C -0.25 -14.28 10.27 84.03 0.86 -13.42 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 21 N -0.95 -56.28 10.09 21.65 0.22 -56.06 16 22 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 C 0.12 5.39 6.51 86.73 0.56 5.96 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.84 6.43 -2.39 -0.02 0.83 16 29 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 30 H 0.07 1.06 7.51 -2.39 -0.02 1.04 16 31 H 0.07 1.06 7.52 -2.39 -0.02 1.04 16 32 H 0.04 1.40 6.14 -2.39 -0.01 1.39 16 33 H 0.07 1.51 6.43 -2.39 -0.02 1.50 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.36 6.43 -2.39 -0.02 1.34 16 37 H 0.05 1.38 6.14 -2.38 -0.01 1.37 16 38 H 0.15 2.29 5.89 -2.91 -0.02 2.28 16 39 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.12 3.64 5.31 -2.91 -0.02 3.63 16 42 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.08 4.61 5.87 -2.39 -0.01 4.60 16 45 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 47 H 0.02 0.98 8.06 -2.39 -0.02 0.96 16 48 H 0.03 1.11 7.42 -2.39 -0.02 1.09 16 Total: -1.00 -64.96 358.92 5.81 -59.15 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.94 Total: 19.68 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 5.48 Total: -24.59 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -2.13 Total: -91.66 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.51 Total: -10.54 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -64.96 5.81 -59.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231310066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.230 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds