Wall clock time and date at job start Tue Mar 31 2020 07:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38291 * 119.96767 * 2 1 4 4 C 1.38243 * 120.11035 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.97334 * 179.97438 * 4 3 2 6 6 C 1.38166 * 120.05671 * 359.68025 * 4 3 2 7 7 C 1.50697 * 120.03319 * 180.30059 * 6 4 3 8 8 N 1.46899 * 109.46749 * 278.00831 * 7 6 4 9 9 C 1.46899 * 111.00064 * 294.00989 * 8 7 6 10 10 C 1.50701 * 109.47419 * 169.28655 * 9 8 7 11 11 H 1.08002 * 119.99469 * 3.82768 * 10 9 8 12 12 C 1.37870 * 120.00151 * 183.82126 * 10 9 8 13 13 N 1.31521 * 120.00065 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00173 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47118 * 89.99850 * 14 12 10 16 16 H 1.48498 * 109.47005 * 209.99717 * 14 12 10 17 17 H 1.48501 * 109.46988 * 329.99686 * 14 12 10 18 18 C 1.46902 * 111.00011 * 170.06191 * 8 7 6 19 19 C 1.54266 * 110.03475 * 56.64740 * 18 8 7 20 20 C 1.54964 * 104.16164 * 217.13918 * 19 18 8 21 21 C 1.54889 * 102.77577 * 37.88694 * 20 19 18 22 22 C 1.53878 * 110.03193 * 299.43176 * 18 8 7 23 23 C 1.38719 * 119.93885 * 0.61699 * 6 4 3 24 24 O 1.35901 * 120.04990 * 179.67833 * 23 6 4 25 25 C 1.38116 * 119.97345 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47309 * 269.97185 * 1 2 3 27 27 H 1.08994 * 109.47559 * 29.97565 * 1 2 3 28 28 H 1.09008 * 109.46631 * 149.97762 * 1 2 3 29 29 H 1.08000 * 119.94661 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.47799 * 89.48704 * 5 4 3 31 31 H 1.08999 * 109.47470 * 209.49268 * 5 4 3 32 32 H 1.09006 * 109.47301 * 329.48695 * 5 4 3 33 33 H 1.09002 * 109.47052 * 38.00021 * 7 6 4 34 34 H 1.09000 * 109.47350 * 158.00722 * 7 6 4 35 35 H 1.09000 * 109.47175 * 289.29107 * 9 8 7 36 36 H 1.09000 * 109.47119 * 49.28859 * 9 8 7 37 37 H 0.97001 * 119.99987 * 179.97438 * 13 12 10 38 38 H 1.09001 * 110.01520 * 178.04474 * 18 8 7 39 39 H 1.09004 * 110.48562 * 335.78739 * 19 18 8 40 40 H 1.08998 * 110.48086 * 98.42841 * 19 18 8 41 41 H 1.09003 * 110.71900 * 279.57296 * 20 19 18 42 42 H 1.08998 * 110.92472 * 156.29570 * 20 19 18 43 43 H 1.09007 * 110.48477 * 203.40690 * 21 20 19 44 44 H 1.09006 * 110.59925 * 80.82084 * 21 20 19 45 45 H 1.08998 * 110.03272 * 238.57322 * 22 18 8 46 46 H 1.09000 * 110.02945 * 359.95156 * 22 18 8 47 47 H 0.96701 * 114.00016 * 269.72532 * 24 23 6 48 48 H 1.07998 * 120.03229 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2015 -0.0005 5 6 4.3298 2.5087 -0.0011 6 6 4.2752 0.0073 0.0056 7 6 5.7822 0.0117 0.0119 8 7 6.2769 0.2024 -1.3581 9 6 5.9331 -0.9464 -2.2066 10 6 6.2170 -0.6094 -3.6478 11 1 6.6706 0.3373 -3.9016 12 6 5.8977 -1.5095 -4.6421 13 7 6.1459 -1.2155 -5.8998 14 14 5.1126 -3.1467 -4.2030 15 1 3.6346 -3.0025 -4.2022 16 1 5.5095 -4.1700 -5.2032 17 1 5.5696 -3.5690 -2.8547 18 6 7.7253 0.4474 -1.3655 19 6 8.4614 -0.7144 -0.6668 20 6 9.6216 -0.0249 0.0946 21 6 8.9698 1.2875 0.5964 22 6 8.0487 1.7199 -0.5630 23 6 3.5846 -1.1957 -0.0006 24 8 4.2659 -2.3715 -0.0012 25 6 2.1970 -1.1964 -0.0005 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3633 -0.8899 -0.5142 29 1 1.6564 2.1325 0.0004 30 1 4.5030 2.8289 1.0264 31 1 5.2863 2.3789 -0.5074 32 1 3.7423 3.2643 -0.5229 33 1 6.1405 0.8243 0.6439 34 1 6.1467 -0.9390 0.4008 35 1 6.5307 -1.8085 -1.9106 36 1 4.8749 -1.1805 -2.0900 37 1 5.9217 -1.8490 -6.5993 38 1 8.0808 0.5520 -2.3906 39 1 7.7961 -1.2227 0.0312 40 1 8.8515 -1.4166 -1.4035 41 1 10.4516 0.1890 -0.5790 42 1 9.9545 -0.6362 0.9334 43 1 9.7314 2.0452 0.7815 44 1 8.3869 1.1054 1.4993 45 1 8.5619 2.4417 -1.1984 46 1 7.1308 2.1561 -0.1689 47 1 4.4631 -2.7115 -0.8848 48 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231844050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:46 Heat of formation + Delta-G solvation = -27.955707 kcal Electronic energy + Delta-G solvation = -26564.734302 eV Core-core repulsion = 23197.973045 eV Total energy + Delta-G solvation = -3366.761257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13816 -38.53309 -36.70890 -34.90148 -33.40731 -32.23161 -30.49738 -28.86082 -28.31480 -27.83306 -26.83570 -25.64579 -23.54222 -21.70366 -21.53648 -20.40807 -19.87996 -18.43717 -17.56080 -16.72072 -16.21479 -16.01878 -15.26060 -15.10268 -14.68280 -14.25575 -13.83007 -13.69384 -13.58217 -13.27808 -13.08062 -12.89946 -12.55673 -12.47340 -12.37053 -12.20928 -12.00670 -11.73997 -11.40714 -11.15845 -11.06944 -10.99097 -10.87357 -10.77406 -10.68731 -10.58532 -10.24424 -10.20406 -10.00969 -9.96708 -9.87411 -9.23382 -8.59020 -8.24691 -8.12351 -7.28162 -6.07419 -4.03477 1.54505 1.61263 3.21974 3.25217 3.31008 3.80015 4.36772 4.53644 4.76706 4.96883 5.01059 5.05131 5.07740 5.24111 5.26427 5.31871 5.43474 5.53207 5.60833 5.63608 5.71810 5.79478 5.86256 5.90563 5.92928 5.93455 5.97061 5.99491 5.99903 6.11903 6.13910 6.19558 6.23178 6.33698 6.42678 6.53551 6.60568 6.65313 6.69943 6.74047 6.77040 6.94413 6.95367 7.04267 7.13910 7.58675 7.92137 7.95148 8.07280 8.64501 9.01750 9.54421 11.05961 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.007538 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.902355 B = 3713.861210 C = 5518.519919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 C -0.134 4.134 4 C -0.044 4.044 5 C -0.120 4.120 6 C -0.092 4.092 7 C 0.085 3.915 8 N -0.511 5.511 9 C 0.164 3.836 10 C -0.503 4.503 11 H 0.081 0.919 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.866 3.134 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.268 1.268 18 C 0.090 3.910 19 C -0.158 4.158 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.124 4.124 23 C 0.118 3.882 24 O -0.503 6.503 25 C -0.156 4.156 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.043 0.957 35 H -0.009 1.009 36 H 0.017 0.983 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.389 0.611 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 4.041 14.180 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.045 4.045 5 C -0.177 4.177 6 C -0.093 4.093 7 C -0.042 4.042 8 N -0.233 5.233 9 C 0.038 3.962 10 C -0.542 4.542 11 H 0.099 0.901 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.694 3.306 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.019 4.019 19 C -0.197 4.197 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.162 4.162 23 C 0.073 3.927 24 O -0.315 6.315 25 C -0.175 4.175 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.008 0.992 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.247 0.753 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.598 4.439 14.376 15.470 hybrid contribution -0.111 -1.937 -0.248 1.956 sum -3.709 2.502 14.128 14.819 Atomic orbital electron populations 1.20744 0.91348 1.02658 1.01898 1.19633 0.95719 0.92653 0.99706 1.20848 0.93542 0.97240 1.03584 1.19572 0.93080 0.94781 0.97042 1.20923 1.01905 0.93369 1.01453 1.19980 0.96252 0.91848 1.01202 1.20999 0.89786 1.00582 0.92849 1.62258 1.11981 1.42355 1.06728 1.20154 0.94730 0.87631 0.93727 1.21012 1.40377 1.04603 0.88160 0.90144 1.24878 0.95588 0.97836 0.94934 1.69884 1.48486 1.36134 0.99359 0.87009 0.80230 0.84748 0.78633 1.20107 1.21076 1.19258 1.22297 0.87160 0.92182 1.00221 1.23059 0.97533 0.99479 0.99618 1.22429 0.97924 0.96328 0.99200 1.22373 0.98482 0.97197 0.98168 1.22347 0.99299 0.97977 0.96568 1.18265 0.89615 0.85119 0.99735 1.84711 1.76359 1.36272 1.34126 1.21145 0.93314 0.98107 1.04891 0.91487 0.91572 0.91750 0.86274 0.91992 0.89099 0.91883 0.90438 0.93862 0.99160 0.96471 0.92720 0.88372 0.91657 0.91560 0.91732 0.92487 0.92291 0.92272 0.91868 0.90954 0.75307 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.08 -1.12 5.88 -104.65 -0.62 -1.73 16 3 C -0.13 -1.97 9.35 -39.56 -0.37 -2.34 16 4 C -0.04 -0.71 5.88 -104.65 -0.62 -1.32 16 5 C -0.12 -1.65 9.24 36.00 0.33 -1.32 16 6 C -0.09 -1.63 4.68 -104.47 -0.49 -2.12 16 7 C 0.09 1.48 3.27 -4.98 -0.02 1.47 16 8 N -0.51 -10.05 3.92 -228.18 -0.89 -10.94 16 9 C 0.16 3.77 2.83 -4.98 -0.01 3.76 16 10 C -0.50 -13.81 9.08 -34.44 -0.31 -14.12 16 11 H 0.08 2.42 7.30 -52.49 -0.38 2.03 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 13 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 14 Si 0.87 20.84 27.39 -169.99 -4.66 16.18 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -5.98 6.65 56.52 0.38 -5.60 16 18 C 0.09 1.62 2.83 -66.59 -0.19 1.44 16 19 C -0.16 -2.62 5.11 -25.03 -0.13 -2.74 16 20 C -0.12 -1.62 6.91 -24.70 -0.17 -1.79 16 21 C -0.12 -1.56 6.82 -25.08 -0.17 -1.74 16 22 C -0.12 -1.81 5.82 -25.61 -0.15 -1.96 16 23 C 0.12 2.11 5.59 -39.21 -0.22 1.90 16 24 O -0.50 -9.11 12.17 -19.43 -0.24 -9.34 16 25 C -0.16 -2.52 9.64 -39.44 -0.38 -2.90 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.06 0.67 8.08 -51.92 -0.42 0.25 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.38 4.64 -51.93 -0.24 1.14 16 32 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.08 1.21 5.26 -51.93 -0.27 0.94 16 34 H 0.04 0.79 5.42 -51.93 -0.28 0.51 16 35 H -0.01 -0.22 6.49 -51.93 -0.34 -0.55 16 36 H 0.02 0.41 4.23 -51.93 -0.22 0.19 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.10 2.06 6.74 -51.93 -0.35 1.71 16 39 H 0.06 1.11 5.66 -51.93 -0.29 0.82 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.04 4.70 -51.93 -0.24 0.79 16 47 H 0.39 6.88 7.51 45.56 0.34 7.22 16 48 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -29.98 358.49 -9.78 -39.77 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.93 Total: 9.84 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -3.24 Total: -24.52 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.12 Total: -37.33 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.24 Total: -9.34 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.66 Total: 16.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.98 -9.78 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231844050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.809 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds