Wall clock time and date at job start Tue Mar 31 2020 07:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38291 * 119.96767 * 2 1 4 4 C 1.38243 * 120.11035 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.97334 * 179.97438 * 4 3 2 6 6 C 1.38166 * 120.05671 * 359.68025 * 4 3 2 7 7 C 1.50697 * 120.03319 * 180.30059 * 6 4 3 8 8 N 1.46899 * 109.46749 * 278.00831 * 7 6 4 9 9 C 1.46899 * 111.00064 * 294.00989 * 8 7 6 10 10 C 1.50701 * 109.47419 * 169.28655 * 9 8 7 11 11 H 1.08002 * 119.99469 * 3.82768 * 10 9 8 12 12 C 1.37870 * 120.00151 * 183.82126 * 10 9 8 13 13 N 1.31521 * 120.00065 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00173 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47118 * 89.99850 * 14 12 10 16 16 H 1.48498 * 109.47005 * 209.99717 * 14 12 10 17 17 H 1.48501 * 109.46988 * 329.99686 * 14 12 10 18 18 C 1.46902 * 111.00011 * 170.06191 * 8 7 6 19 19 C 1.54266 * 110.03475 * 56.64740 * 18 8 7 20 20 C 1.54964 * 104.16164 * 217.13918 * 19 18 8 21 21 C 1.54889 * 102.77577 * 37.88694 * 20 19 18 22 22 C 1.53878 * 110.03193 * 299.43176 * 18 8 7 23 23 C 1.38719 * 119.93885 * 0.61699 * 6 4 3 24 24 O 1.35901 * 120.04990 * 179.67833 * 23 6 4 25 25 C 1.38116 * 119.97345 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47309 * 269.97185 * 1 2 3 27 27 H 1.08994 * 109.47559 * 29.97565 * 1 2 3 28 28 H 1.09008 * 109.46631 * 149.97762 * 1 2 3 29 29 H 1.08000 * 119.94661 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.47799 * 89.48704 * 5 4 3 31 31 H 1.08999 * 109.47470 * 209.49268 * 5 4 3 32 32 H 1.09006 * 109.47301 * 329.48695 * 5 4 3 33 33 H 1.09002 * 109.47052 * 38.00021 * 7 6 4 34 34 H 1.09000 * 109.47350 * 158.00722 * 7 6 4 35 35 H 1.09000 * 109.47175 * 289.29107 * 9 8 7 36 36 H 1.09000 * 109.47119 * 49.28859 * 9 8 7 37 37 H 0.97001 * 119.99987 * 179.97438 * 13 12 10 38 38 H 1.09001 * 110.01520 * 178.04474 * 18 8 7 39 39 H 1.09004 * 110.48562 * 335.78739 * 19 18 8 40 40 H 1.08998 * 110.48086 * 98.42841 * 19 18 8 41 41 H 1.09003 * 110.71900 * 279.57296 * 20 19 18 42 42 H 1.08998 * 110.92472 * 156.29570 * 20 19 18 43 43 H 1.09007 * 110.48477 * 203.40690 * 21 20 19 44 44 H 1.09006 * 110.59925 * 80.82084 * 21 20 19 45 45 H 1.08998 * 110.03272 * 238.57322 * 22 18 8 46 46 H 1.09000 * 110.02945 * 359.95156 * 22 18 8 47 47 H 0.96701 * 114.00016 * 269.72532 * 24 23 6 48 48 H 1.07998 * 120.03229 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2015 -0.0005 5 6 4.3298 2.5087 -0.0011 6 6 4.2752 0.0073 0.0056 7 6 5.7822 0.0117 0.0119 8 7 6.2769 0.2024 -1.3581 9 6 5.9331 -0.9464 -2.2066 10 6 6.2170 -0.6094 -3.6478 11 1 6.6706 0.3373 -3.9016 12 6 5.8977 -1.5095 -4.6421 13 7 6.1459 -1.2155 -5.8998 14 14 5.1126 -3.1467 -4.2030 15 1 3.6346 -3.0025 -4.2022 16 1 5.5095 -4.1700 -5.2032 17 1 5.5696 -3.5690 -2.8547 18 6 7.7253 0.4474 -1.3655 19 6 8.4614 -0.7144 -0.6668 20 6 9.6216 -0.0249 0.0946 21 6 8.9698 1.2875 0.5964 22 6 8.0487 1.7199 -0.5630 23 6 3.5846 -1.1957 -0.0006 24 8 4.2659 -2.3715 -0.0012 25 6 2.1970 -1.1964 -0.0005 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3633 -0.8899 -0.5142 29 1 1.6564 2.1325 0.0004 30 1 4.5030 2.8289 1.0264 31 1 5.2863 2.3789 -0.5074 32 1 3.7423 3.2643 -0.5229 33 1 6.1405 0.8243 0.6439 34 1 6.1467 -0.9390 0.4008 35 1 6.5307 -1.8085 -1.9106 36 1 4.8749 -1.1805 -2.0900 37 1 5.9217 -1.8490 -6.5993 38 1 8.0808 0.5520 -2.3906 39 1 7.7961 -1.2227 0.0312 40 1 8.8515 -1.4166 -1.4035 41 1 10.4516 0.1890 -0.5790 42 1 9.9545 -0.6362 0.9334 43 1 9.7314 2.0452 0.7815 44 1 8.3869 1.1054 1.4993 45 1 8.5619 2.4417 -1.1984 46 1 7.1308 2.1561 -0.1689 47 1 4.4631 -2.7115 -0.8848 48 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231844050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:45 Heat of formation + Delta-G solvation = -46.240580 kcal Electronic energy + Delta-G solvation = -26565.527194 eV Core-core repulsion = 23197.973045 eV Total energy + Delta-G solvation = -3367.554149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42899 -39.85824 -37.98523 -36.27718 -34.96399 -34.00005 -31.72661 -30.40317 -29.53132 -29.29378 -27.94486 -27.01292 -25.04312 -23.27014 -22.93619 -21.56720 -21.05443 -19.95450 -19.06941 -18.52322 -17.62244 -17.28454 -16.66007 -16.39285 -16.12271 -15.94436 -15.25401 -15.11357 -14.68482 -14.56001 -14.41673 -14.22573 -13.90950 -13.78750 -13.62855 -13.45790 -13.25523 -13.19514 -12.82969 -12.61069 -12.44545 -12.28489 -12.21976 -12.05910 -11.92691 -11.90280 -11.80555 -11.65239 -11.55754 -11.35571 -11.29813 -11.12775 -10.77314 -9.44641 -9.35562 -8.85459 -8.28529 -6.29720 0.31453 0.41028 1.27676 1.29673 1.38196 2.30316 2.58785 3.03911 3.22039 3.40347 3.77764 3.83525 3.89532 3.94548 4.07489 4.11329 4.25885 4.44440 4.49576 4.55105 4.55523 4.64291 4.67157 4.72122 4.74410 4.79330 4.82404 4.84697 4.90659 4.91902 4.95026 5.04467 5.06043 5.11481 5.11635 5.21452 5.25277 5.35983 5.43141 5.50362 5.50978 5.52387 5.58165 5.61722 5.76220 5.98506 6.03864 6.46677 6.61849 6.68656 6.76265 7.32685 8.88091 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.007538 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.902355 B = 3713.861210 C = 5518.519919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.055 4.055 5 C -0.117 4.117 6 C -0.120 4.120 7 C 0.098 3.902 8 N -0.518 5.518 9 C 0.181 3.819 10 C -0.505 4.505 11 H 0.037 0.963 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.932 3.068 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.243 1.243 18 C 0.085 3.915 19 C -0.156 4.156 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.118 4.118 23 C 0.092 3.908 24 O -0.509 6.509 25 C -0.170 4.170 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.033 0.967 35 H -0.014 1.014 36 H 0.018 0.982 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.386 0.614 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 4.504 16.902 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.076 4.076 3 C -0.156 4.156 4 C -0.055 4.055 5 C -0.174 4.174 6 C -0.121 4.121 7 C -0.029 4.029 8 N -0.241 5.241 9 C 0.054 3.946 10 C -0.543 4.543 11 H 0.056 0.944 12 C -0.188 4.188 13 N -0.589 5.589 14 Si 0.755 3.245 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.166 1.166 18 C -0.024 4.024 19 C -0.195 4.195 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.047 3.953 24 O -0.321 6.321 25 C -0.189 4.189 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.003 0.997 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.244 0.756 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.892 4.918 17.131 18.482 hybrid contribution 0.278 -1.966 -1.128 2.284 sum -4.614 2.951 16.003 16.914 Atomic orbital electron populations 1.20818 0.88622 1.03617 1.03396 1.20098 0.97736 0.92001 0.97774 1.21229 0.93212 0.98572 1.02581 1.19929 0.94060 0.95049 0.96504 1.20934 1.00851 0.92651 1.02933 1.20127 0.96240 0.92652 1.03065 1.20921 0.90117 1.00704 0.91178 1.62154 1.13186 1.40639 1.08092 1.19804 0.94426 0.88653 0.91686 1.21236 1.39354 1.02893 0.90841 0.94432 1.25767 0.96318 1.02064 0.94645 1.70047 1.50343 1.37836 1.00669 0.85949 0.79442 0.79574 0.79512 1.19199 1.20950 1.16650 1.22281 0.86422 0.94897 0.98760 1.22987 0.98705 0.98642 0.99186 1.22414 0.96618 0.96771 0.99410 1.22344 0.98539 0.97048 0.97272 1.22295 1.00243 0.96027 0.97021 1.18589 0.90566 0.85038 1.01118 1.84702 1.76685 1.36673 1.34002 1.21398 0.92813 0.99476 1.05204 0.89580 0.90190 0.91264 0.83506 0.89533 0.90913 0.90686 0.88481 0.94874 0.99681 0.96398 0.92660 0.92726 0.91909 0.93941 0.91467 0.90572 0.89823 0.91147 0.91647 0.90348 0.75629 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.01 71.24 0.71 -1.29 16 2 C -0.08 -2.02 5.88 -19.88 -0.12 -2.14 16 3 C -0.14 -3.70 9.35 22.28 0.21 -3.49 16 4 C -0.05 -1.66 5.88 -19.88 -0.12 -1.78 16 5 C -0.12 -2.97 9.24 71.23 0.66 -2.31 16 6 C -0.12 -4.15 4.68 -19.77 -0.09 -4.25 16 7 C 0.10 3.35 3.27 85.56 0.28 3.63 16 8 N -0.52 -20.84 3.92 -875.81 -3.43 -24.28 16 9 C 0.18 8.59 2.83 85.56 0.24 8.83 16 10 C -0.50 -29.10 9.08 25.60 0.23 -28.87 16 11 H 0.04 2.42 7.30 -2.91 -0.02 2.40 16 12 C 0.01 0.53 5.47 84.65 0.46 0.99 16 13 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 14 Si 0.93 43.75 27.39 68.60 1.88 45.63 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.24 -10.33 6.65 99.48 0.66 -9.67 16 18 C 0.09 3.16 2.83 45.64 0.13 3.29 16 19 C -0.16 -5.24 5.11 31.70 0.16 -5.08 16 20 C -0.11 -2.88 6.91 31.91 0.22 -2.66 16 21 C -0.11 -2.57 6.82 31.67 0.22 -2.35 16 22 C -0.12 -3.34 5.82 31.32 0.18 -3.16 16 23 C 0.09 3.23 5.59 22.51 0.13 3.36 16 24 O -0.51 -18.31 12.17 -92.44 -1.13 -19.43 16 25 C -0.17 -5.27 9.64 22.36 0.22 -5.05 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 28 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 29 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.12 4.64 -2.39 -0.01 2.10 16 32 H 0.07 1.69 8.09 -2.38 -0.02 1.68 16 33 H 0.10 2.89 5.26 -2.39 -0.01 2.87 16 34 H 0.03 1.21 5.42 -2.39 -0.01 1.19 16 35 H -0.01 -0.69 6.49 -2.39 -0.02 -0.71 16 36 H 0.02 0.86 4.23 -2.39 -0.01 0.85 16 37 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.05 2.48 6.74 -2.39 -0.02 2.46 16 39 H 0.06 2.14 5.66 -2.39 -0.01 2.12 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.08 2.13 4.70 -2.39 -0.01 2.12 16 47 H 0.39 13.59 7.51 -74.06 -0.56 13.03 16 48 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -68.40 358.49 1.71 -66.69 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.36 Total: 33.03 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 3.72 Total: -42.31 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -3.13 Total: -83.61 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.13 Total: -19.43 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -68.40 1.71 -66.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231844050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.454 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds