Wall clock time and date at job start Tue Mar 31 2020 07:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 110.28790 * 2 1 4 4 C 1.54381 * 110.32213 * 237.76849 * 2 1 3 5 5 N 1.48556 * 104.59204 * 264.95841 * 4 2 1 6 6 C 1.46905 * 110.99837 * 200.95740 * 5 4 2 7 7 C 1.50697 * 109.47594 * 279.13121 * 6 5 4 8 8 C 1.37632 * 120.13042 * 263.93518 * 7 6 5 9 9 C 1.38615 * 120.24984 * 179.97438 * 8 7 6 10 10 C 1.38658 * 120.50107 * 0.02562 * 9 8 7 11 11 C 1.37597 * 120.24567 * 359.97438 * 10 9 8 12 12 C 1.40697 * 120.12310 * 83.90448 * 7 6 5 13 13 C 1.41396 * 120.24833 * 0.02562 * 12 7 6 14 14 H 1.07995 * 119.99709 * 28.91647 * 13 12 7 15 15 C 1.39946 * 119.99966 * 208.91484 * 13 12 7 16 16 N 1.30822 * 120.00129 * 11.97338 * 15 13 12 17 17 Si 1.86798 * 119.99908 * 191.97618 * 15 13 12 18 18 H 1.48508 * 109.46971 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47352 * 119.99835 * 17 15 13 20 20 H 1.48497 * 109.47101 * 240.00326 * 17 15 13 21 21 C 1.48555 * 104.22360 * 320.51571 * 5 4 2 22 22 C 1.53002 * 110.41143 * 280.58975 * 21 5 4 23 23 C 1.53000 * 110.41261 * 158.26412 * 21 5 4 24 24 O 1.42901 * 109.47361 * 61.45677 * 23 21 5 25 25 C 1.54256 * 110.32107 * 122.13039 * 2 1 3 26 26 H 1.08997 * 109.47203 * 297.87308 * 1 2 3 27 27 H 1.09003 * 109.47149 * 57.86920 * 1 2 3 28 28 H 1.08995 * 109.47252 * 177.86499 * 1 2 3 29 29 H 1.08999 * 109.47415 * 182.12565 * 3 2 1 30 30 H 1.09001 * 109.47604 * 302.13095 * 3 2 1 31 31 H 1.09007 * 109.47161 * 62.12984 * 3 2 1 32 32 H 1.08996 * 110.41426 * 146.17472 * 4 2 1 33 33 H 1.09004 * 110.40973 * 23.73114 * 4 2 1 34 34 H 1.08997 * 109.46824 * 159.12840 * 6 5 4 35 35 H 1.08995 * 109.46797 * 39.13466 * 6 5 4 36 36 H 1.08007 * 119.87441 * 359.97438 * 8 7 6 37 37 H 1.07995 * 119.74879 * 179.97438 * 9 8 7 38 38 H 1.07992 * 119.87442 * 179.70380 * 10 9 8 39 39 H 1.08002 * 120.12640 * 179.97438 * 11 10 9 40 40 H 0.96996 * 119.99970 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.47269 * 58.54512 * 22 21 5 42 42 H 1.09004 * 109.46870 * 178.54531 * 22 21 5 43 43 H 1.08995 * 109.47117 * 298.54178 * 22 21 5 44 44 H 1.09007 * 109.47196 * 181.45412 * 23 21 5 45 45 H 1.09003 * 109.47051 * 301.45398 * 23 21 5 46 46 H 0.96699 * 113.99915 * 180.02562 * 24 23 21 47 47 H 1.09000 * 110.32737 * 359.97438 * 25 2 1 48 48 H 1.08995 * 110.40995 * 237.83378 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4350 0.0000 4 6 2.0662 -0.7721 -1.2246 5 7 2.3147 -2.1473 -0.7206 6 6 3.2648 -2.8609 -1.5844 7 6 2.5399 -3.4009 -2.7902 8 6 2.0918 -4.7022 -2.8014 9 6 1.4243 -5.2013 -3.9090 10 6 1.2006 -4.3981 -5.0169 11 6 1.6397 -3.0941 -5.0277 12 6 2.3180 -2.5765 -3.9085 13 6 2.7737 -1.2380 -3.9082 14 1 3.6450 -0.9643 -3.3318 15 6 2.0957 -0.2678 -4.6550 16 7 0.9193 -0.5356 -5.1606 17 14 2.8706 1.4094 -4.9299 18 1 4.1943 1.4592 -4.2585 19 1 3.0448 1.6416 -6.3863 20 1 1.9888 2.4611 -4.3629 21 6 2.8806 -1.9416 0.6374 22 6 4.3627 -1.5725 0.5476 23 6 2.6957 -3.1994 1.4887 24 8 3.3939 -4.2903 0.8847 25 6 2.0657 -0.7693 1.2250 26 1 -0.3633 0.4804 0.9084 27 1 -0.3633 0.5466 -0.8703 28 1 -0.3633 -1.0269 -0.0383 29 1 3.1498 1.4198 -0.0381 30 1 1.6739 1.9654 -0.8702 31 1 1.7359 1.9424 0.9085 32 1 2.9940 -0.3241 -1.5802 33 1 1.3212 -0.7877 -2.0202 34 1 3.7115 -3.6858 -1.0294 35 1 4.0475 -2.1748 -1.9080 36 1 2.2609 -5.3369 -1.9440 37 1 1.0765 -6.2237 -3.9093 38 1 0.6837 -4.7988 -5.8762 39 1 1.4648 -2.4704 -5.8918 40 1 0.4495 0.1366 -5.6785 41 1 4.4761 -0.6667 -0.0480 42 1 4.7555 -1.4000 1.5497 43 1 4.9123 -2.3877 0.0773 44 1 3.0926 -3.0231 2.4885 45 1 1.6347 -3.4399 1.5561 46 1 3.3199 -5.1224 1.3717 47 1 1.2387 -1.1466 1.8265 48 1 2.7077 -0.1262 1.8268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235511019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:20 Heat of formation + Delta-G solvation = -34.094055 kcal Electronic energy + Delta-G solvation = -27206.287357 eV Core-core repulsion = 23839.259921 eV Total energy + Delta-G solvation = -3367.027436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.87993 -37.40786 -36.31976 -33.92000 -33.54233 -31.82632 -29.41060 -29.21189 -27.29045 -26.66638 -26.09702 -25.47224 -24.30854 -22.83526 -20.78414 -19.46783 -18.78314 -18.35206 -16.95348 -16.92139 -15.52665 -15.18683 -14.98358 -14.61992 -14.13026 -13.81078 -13.64999 -13.32653 -13.09253 -13.01320 -12.83554 -12.54230 -12.39846 -12.09917 -11.95503 -11.60239 -11.48031 -11.40304 -11.28358 -11.19154 -11.05120 -10.86374 -10.63970 -10.56676 -10.32669 -10.23201 -10.06930 -9.99426 -9.78431 -9.66397 -9.28613 -9.15335 -9.05758 -7.51279 -7.18277 -7.15777 -6.61520 -4.23204 2.84224 3.09744 3.12010 3.13656 3.31066 3.98775 4.42643 4.67355 4.78404 5.00178 5.18667 5.24564 5.41740 5.49683 5.56666 5.66043 5.79163 5.85425 5.88198 5.92239 5.97209 6.08466 6.12370 6.18103 6.25089 6.29320 6.32774 6.39990 6.47414 6.51357 6.55599 6.62329 6.64713 6.72697 6.82669 6.86716 6.95533 7.21257 7.24310 7.40637 7.51463 7.75800 7.78724 7.94485 7.98365 8.10455 8.17696 8.23088 8.45178 8.74885 9.01717 9.10305 10.32655 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.008118 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.856916 B = 3448.421060 C = 5057.529768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 C -0.136 4.136 4 C 0.058 3.942 5 N -0.479 5.479 6 C 0.110 3.890 7 C -0.173 4.173 8 C -0.078 4.078 9 C -0.238 4.238 10 C -0.112 4.112 11 C -0.160 4.160 12 C 0.118 3.882 13 C -0.456 4.456 14 H 0.074 0.926 15 C 0.079 3.921 16 N -0.801 5.801 17 Si 0.891 3.109 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.082 3.918 22 C -0.165 4.165 23 C 0.101 3.899 24 O -0.559 6.559 25 C -0.102 4.102 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.276 0.724 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.036 0.964 45 H 0.049 0.951 46 H 0.367 0.633 47 H 0.066 0.934 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 1.095 11.532 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.077 4.077 3 C -0.194 4.194 4 C -0.069 4.069 5 N -0.202 5.202 6 C -0.017 4.017 7 C -0.175 4.175 8 C -0.097 4.097 9 C -0.258 4.258 10 C -0.130 4.130 11 C -0.179 4.179 12 C 0.115 3.885 13 C -0.486 4.486 14 H 0.092 0.908 15 C -0.137 4.137 16 N -0.428 5.428 17 Si 0.716 3.284 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.008 4.008 22 C -0.223 4.223 23 C 0.023 3.977 24 O -0.363 6.363 25 C -0.140 4.140 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.213 0.787 47 H 0.085 0.915 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.568 1.357 10.967 11.161 hybrid contribution 0.750 0.928 0.145 1.201 sum 2.318 2.284 11.112 11.579 Atomic orbital electron populations 1.21776 0.94220 1.02148 1.00467 1.21410 0.95951 0.94580 0.95793 1.21871 1.00499 0.95854 1.01179 1.23444 1.00956 0.87263 0.95282 1.65578 1.40153 1.14918 0.99574 1.20950 0.92113 0.96910 0.91706 1.19559 1.08407 0.94657 0.94831 1.20364 0.98145 0.95045 0.96147 1.20374 1.10222 0.98418 0.96769 1.20667 1.00516 0.95067 0.96784 1.21304 1.03852 0.93573 0.99178 1.17448 0.89378 0.92264 0.89376 1.19458 1.11369 0.92643 1.25155 0.90792 1.25726 0.94009 1.00180 0.93811 1.69814 1.10712 1.35140 1.27092 0.86520 0.80466 0.82405 0.78967 1.18619 1.19952 1.19982 1.22083 0.93137 0.92726 0.92842 1.22294 0.96886 1.01950 1.01179 1.22097 0.95364 0.86621 0.93602 1.86563 1.75572 1.20514 1.53693 1.22415 0.98815 0.95597 0.97172 0.93873 0.92797 0.91965 0.93012 0.92597 0.93226 0.93755 0.88034 0.90071 0.95209 0.89452 0.89955 0.89897 0.86675 0.91326 0.92688 0.93324 0.91408 0.94598 0.93315 0.78651 0.91492 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.23 37.16 0.31 -1.69 16 2 C -0.08 -1.22 1.03 -153.13 -0.16 -1.38 16 3 C -0.14 -1.96 8.26 37.16 0.31 -1.65 16 4 C 0.06 1.14 3.34 -2.18 -0.01 1.14 16 5 N -0.48 -9.28 4.96 -216.03 -1.07 -10.35 16 6 C 0.11 2.32 3.40 -4.97 -0.02 2.31 16 7 C -0.17 -4.17 5.40 -103.92 -0.56 -4.73 16 8 C -0.08 -1.83 9.66 -39.66 -0.38 -2.21 16 9 C -0.24 -5.56 10.05 -39.29 -0.39 -5.96 16 10 C -0.11 -2.71 10.02 -39.66 -0.40 -3.11 16 11 C -0.16 -4.19 8.66 -38.87 -0.34 -4.53 16 12 C 0.12 3.06 5.35 -106.82 -0.57 2.49 16 13 C -0.46 -11.48 5.34 -37.74 -0.20 -11.68 16 14 H 0.07 1.85 5.38 -52.49 -0.28 1.57 16 15 C 0.08 1.92 5.12 -17.34 -0.09 1.83 16 16 N -0.80 -20.41 10.92 55.55 0.61 -19.81 16 17 Si 0.89 18.67 29.58 -169.99 -5.03 13.64 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 C 0.08 1.29 0.68 -129.96 -0.09 1.20 16 22 C -0.16 -2.50 7.29 37.16 0.27 -2.23 16 23 C 0.10 1.39 6.10 37.16 0.23 1.62 16 24 O -0.56 -7.95 10.48 -35.23 -0.37 -8.32 16 25 C -0.10 -1.44 5.40 -25.35 -0.14 -1.58 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.93 5.28 -51.93 -0.27 0.65 16 33 H 0.10 2.41 6.49 -51.93 -0.34 2.07 16 34 H 0.08 1.67 4.86 -51.93 -0.25 1.42 16 35 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 36 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 37 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 3.13 6.28 -52.49 -0.33 2.80 16 40 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 41 H 0.05 0.88 7.18 -51.93 -0.37 0.50 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.11 6.27 -51.93 -0.33 0.79 16 44 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 46 H 0.37 3.50 9.12 45.56 0.42 3.92 16 47 H 0.07 0.88 7.41 -51.93 -0.38 0.50 16 48 H 0.06 0.80 7.44 -51.93 -0.39 0.42 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -27.61 357.42 -9.72 -37.33 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -7.02 Total: 12.28 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -2.23 Total: -30.16 kcal Atomic # 7 Polarization: -29.69 SS G_CDS: -0.46 Total: -30.16 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.37 Total: -8.32 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.61 -9.72 -37.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.234 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds