Wall clock time and date at job start Tue Mar 31 2020 07:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 110.28790 * 2 1 4 4 C 1.54381 * 110.32213 * 237.76849 * 2 1 3 5 5 N 1.48556 * 104.59204 * 264.95841 * 4 2 1 6 6 C 1.46905 * 110.99837 * 200.95740 * 5 4 2 7 7 C 1.50697 * 109.47594 * 279.13121 * 6 5 4 8 8 C 1.37632 * 120.13042 * 263.93518 * 7 6 5 9 9 C 1.38615 * 120.24984 * 179.97438 * 8 7 6 10 10 C 1.38658 * 120.50107 * 0.02562 * 9 8 7 11 11 C 1.37597 * 120.24567 * 359.97438 * 10 9 8 12 12 C 1.40697 * 120.12310 * 83.90448 * 7 6 5 13 13 C 1.41396 * 120.24833 * 0.02562 * 12 7 6 14 14 H 1.07995 * 119.99709 * 28.91647 * 13 12 7 15 15 C 1.39946 * 119.99966 * 208.91484 * 13 12 7 16 16 N 1.30822 * 120.00129 * 11.97338 * 15 13 12 17 17 Si 1.86798 * 119.99908 * 191.97618 * 15 13 12 18 18 H 1.48508 * 109.46971 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47352 * 119.99835 * 17 15 13 20 20 H 1.48497 * 109.47101 * 240.00326 * 17 15 13 21 21 C 1.48555 * 104.22360 * 320.51571 * 5 4 2 22 22 C 1.53002 * 110.41143 * 280.58975 * 21 5 4 23 23 C 1.53000 * 110.41261 * 158.26412 * 21 5 4 24 24 O 1.42901 * 109.47361 * 61.45677 * 23 21 5 25 25 C 1.54256 * 110.32107 * 122.13039 * 2 1 3 26 26 H 1.08997 * 109.47203 * 297.87308 * 1 2 3 27 27 H 1.09003 * 109.47149 * 57.86920 * 1 2 3 28 28 H 1.08995 * 109.47252 * 177.86499 * 1 2 3 29 29 H 1.08999 * 109.47415 * 182.12565 * 3 2 1 30 30 H 1.09001 * 109.47604 * 302.13095 * 3 2 1 31 31 H 1.09007 * 109.47161 * 62.12984 * 3 2 1 32 32 H 1.08996 * 110.41426 * 146.17472 * 4 2 1 33 33 H 1.09004 * 110.40973 * 23.73114 * 4 2 1 34 34 H 1.08997 * 109.46824 * 159.12840 * 6 5 4 35 35 H 1.08995 * 109.46797 * 39.13466 * 6 5 4 36 36 H 1.08007 * 119.87441 * 359.97438 * 8 7 6 37 37 H 1.07995 * 119.74879 * 179.97438 * 9 8 7 38 38 H 1.07992 * 119.87442 * 179.70380 * 10 9 8 39 39 H 1.08002 * 120.12640 * 179.97438 * 11 10 9 40 40 H 0.96996 * 119.99970 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.47269 * 58.54512 * 22 21 5 42 42 H 1.09004 * 109.46870 * 178.54531 * 22 21 5 43 43 H 1.08995 * 109.47117 * 298.54178 * 22 21 5 44 44 H 1.09007 * 109.47196 * 181.45412 * 23 21 5 45 45 H 1.09003 * 109.47051 * 301.45398 * 23 21 5 46 46 H 0.96699 * 113.99915 * 180.02562 * 24 23 21 47 47 H 1.09000 * 110.32737 * 359.97438 * 25 2 1 48 48 H 1.08995 * 110.40995 * 237.83378 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4350 0.0000 4 6 2.0662 -0.7721 -1.2246 5 7 2.3147 -2.1473 -0.7206 6 6 3.2648 -2.8609 -1.5844 7 6 2.5399 -3.4009 -2.7902 8 6 2.0918 -4.7022 -2.8014 9 6 1.4243 -5.2013 -3.9090 10 6 1.2006 -4.3981 -5.0169 11 6 1.6397 -3.0941 -5.0277 12 6 2.3180 -2.5765 -3.9085 13 6 2.7737 -1.2380 -3.9082 14 1 3.6450 -0.9643 -3.3318 15 6 2.0957 -0.2678 -4.6550 16 7 0.9193 -0.5356 -5.1606 17 14 2.8706 1.4094 -4.9299 18 1 4.1943 1.4592 -4.2585 19 1 3.0448 1.6416 -6.3863 20 1 1.9888 2.4611 -4.3629 21 6 2.8806 -1.9416 0.6374 22 6 4.3627 -1.5725 0.5476 23 6 2.6957 -3.1994 1.4887 24 8 3.3939 -4.2903 0.8847 25 6 2.0657 -0.7693 1.2250 26 1 -0.3633 0.4804 0.9084 27 1 -0.3633 0.5466 -0.8703 28 1 -0.3633 -1.0269 -0.0383 29 1 3.1498 1.4198 -0.0381 30 1 1.6739 1.9654 -0.8702 31 1 1.7359 1.9424 0.9085 32 1 2.9940 -0.3241 -1.5802 33 1 1.3212 -0.7877 -2.0202 34 1 3.7115 -3.6858 -1.0294 35 1 4.0475 -2.1748 -1.9080 36 1 2.2609 -5.3369 -1.9440 37 1 1.0765 -6.2237 -3.9093 38 1 0.6837 -4.7988 -5.8762 39 1 1.4648 -2.4704 -5.8918 40 1 0.4495 0.1366 -5.6785 41 1 4.4761 -0.6667 -0.0480 42 1 4.7555 -1.4000 1.5497 43 1 4.9123 -2.3877 0.0773 44 1 3.0926 -3.0231 2.4885 45 1 1.6347 -3.4399 1.5561 46 1 3.3199 -5.1224 1.3717 47 1 1.2387 -1.1466 1.8265 48 1 2.7077 -0.1262 1.8268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:19 Heat of formation + Delta-G solvation = -50.811541 kcal Electronic energy + Delta-G solvation = -27207.012282 eV Core-core repulsion = 23839.259921 eV Total energy + Delta-G solvation = -3367.752360 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24757 -39.23432 -37.42171 -35.45141 -35.30594 -33.28604 -31.28709 -30.91049 -28.50193 -28.04036 -27.61612 -26.80039 -25.93869 -24.39129 -22.70252 -21.22020 -20.05337 -19.76520 -18.83760 -17.99746 -17.32319 -16.54654 -16.34618 -16.24701 -15.62078 -15.46052 -15.21973 -14.74901 -14.47282 -14.39060 -14.30723 -14.10442 -13.75305 -13.50376 -13.37830 -13.21571 -12.99427 -12.94954 -12.79515 -12.72081 -12.61573 -12.30830 -12.21831 -12.17185 -11.98356 -11.59998 -11.42739 -11.28894 -11.23299 -11.12803 -11.00093 -10.91642 -10.62072 -9.17872 -9.11803 -8.95912 -8.50502 -6.18854 1.02639 1.20655 1.33860 1.44950 1.49776 2.20393 2.85589 3.31088 3.37515 3.76101 3.88008 3.98660 4.07456 4.21225 4.29541 4.40025 4.51666 4.53359 4.61329 4.65695 4.70606 4.76468 4.79410 4.81974 4.84037 4.85739 4.90752 4.93664 5.04210 5.08161 5.14597 5.18134 5.25147 5.29275 5.29990 5.36690 5.44110 5.46974 5.56417 5.60335 5.67674 5.86059 6.13177 6.19016 6.27758 6.35137 6.50267 6.54155 6.81089 7.07592 7.10478 7.16879 8.45951 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.008118 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.856916 B = 3448.421060 C = 5057.529768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.133 4.133 4 C 0.069 3.931 5 N -0.491 5.491 6 C 0.126 3.874 7 C -0.183 4.183 8 C -0.086 4.086 9 C -0.239 4.239 10 C -0.120 4.120 11 C -0.189 4.189 12 C 0.091 3.909 13 C -0.464 4.464 14 H 0.066 0.934 15 C 0.044 3.956 16 N -0.831 5.831 17 Si 0.951 3.049 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.266 1.266 21 C 0.075 3.925 22 C -0.158 4.158 23 C 0.104 3.896 24 O -0.581 6.581 25 C -0.094 4.094 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.009 0.991 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.280 0.720 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.388 0.612 47 H 0.082 0.918 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 1.342 14.434 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.190 4.190 4 C -0.059 4.059 5 N -0.214 5.214 6 C -0.001 4.001 7 C -0.185 4.185 8 C -0.104 4.104 9 C -0.258 4.258 10 C -0.138 4.138 11 C -0.209 4.209 12 C 0.089 3.911 13 C -0.494 4.494 14 H 0.084 0.916 15 C -0.169 4.169 16 N -0.459 5.459 17 Si 0.773 3.227 18 H -0.184 1.184 19 H -0.194 1.194 20 H -0.190 1.190 21 C -0.015 4.015 22 C -0.217 4.217 23 C 0.026 3.974 24 O -0.389 6.389 25 C -0.131 4.131 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.027 0.973 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.238 0.762 47 H 0.101 0.899 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.922 1.581 13.883 14.104 hybrid contribution 0.620 0.739 -0.736 1.213 sum 2.541 2.320 13.147 13.590 Atomic orbital electron populations 1.21719 0.94035 1.01074 1.01242 1.21408 0.96089 0.95368 0.94847 1.21845 1.00455 0.94709 1.02033 1.23099 0.98593 0.88298 0.95870 1.65457 1.40227 1.14558 1.01157 1.20739 0.91497 0.96787 0.91089 1.19998 1.08027 0.95075 0.95409 1.20666 0.97810 0.94973 0.96987 1.20721 1.09390 0.99592 0.96097 1.20917 1.00375 0.94497 0.98034 1.21298 1.05892 0.94577 0.99084 1.17774 0.90118 0.93153 0.90104 1.19445 1.11310 0.92943 1.25746 0.91590 1.26373 0.94093 1.03276 0.93173 1.69884 1.11766 1.36464 1.27749 0.85611 0.79678 0.78446 0.78929 1.18419 1.19422 1.19044 1.22320 0.93462 0.94853 0.90834 1.22221 0.96503 1.00530 1.02412 1.22088 0.95410 0.85527 0.94378 1.86479 1.75670 1.21833 1.54957 1.22412 0.99441 0.94942 0.96338 0.90630 0.94611 0.93750 0.92948 0.94090 0.90184 0.95824 0.93003 0.89225 0.97265 0.87281 0.87034 0.87970 0.88564 0.90900 0.94171 0.90363 0.93123 0.91229 0.93671 0.76241 0.89929 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 8.23 71.98 0.59 -3.13 16 2 C -0.08 -2.34 1.03 -51.29 -0.05 -2.40 16 3 C -0.13 -3.58 8.26 71.98 0.59 -2.98 16 4 C 0.07 2.82 3.34 86.45 0.29 3.11 16 5 N -0.49 -19.06 4.96 -837.40 -4.15 -23.21 16 6 C 0.13 5.43 3.40 85.56 0.29 5.73 16 7 C -0.18 -9.08 5.40 -19.41 -0.10 -9.19 16 8 C -0.09 -3.98 9.66 22.22 0.21 -3.76 16 9 C -0.24 -10.98 10.05 22.46 0.23 -10.75 16 10 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 11 C -0.19 -10.37 8.66 22.73 0.20 -10.18 16 12 C 0.09 4.95 5.35 -21.29 -0.11 4.84 16 13 C -0.46 -24.64 5.34 23.46 0.13 -24.51 16 14 H 0.07 3.51 5.38 -2.91 -0.02 3.50 16 15 C 0.04 2.25 5.12 85.26 0.44 2.68 16 16 N -0.83 -44.43 10.92 21.83 0.24 -44.19 16 17 Si 0.95 39.50 29.58 68.60 2.03 41.53 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 21 C 0.08 2.20 0.68 3.68 0.00 2.20 16 22 C -0.16 -4.52 7.29 71.98 0.52 -3.99 16 23 C 0.10 2.52 6.10 71.98 0.44 2.96 16 24 O -0.58 -15.09 10.48 -148.98 -1.56 -16.65 16 25 C -0.09 -2.34 5.40 31.49 0.17 -2.17 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.02 1.04 5.28 -2.39 -0.01 1.02 16 33 H 0.05 2.61 6.49 -2.39 -0.02 2.60 16 34 H 0.09 3.67 4.86 -2.39 -0.01 3.66 16 35 H 0.01 0.43 5.46 -2.39 -0.01 0.42 16 36 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 38 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.10 5.54 6.28 -2.91 -0.02 5.53 16 40 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 41 H 0.04 1.24 7.18 -2.39 -0.02 1.23 16 42 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.05 1.61 6.27 -2.39 -0.01 1.60 16 44 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.05 1.13 8.12 -2.39 -0.02 1.11 16 46 H 0.39 6.29 9.12 -74.06 -0.68 5.61 16 47 H 0.08 1.84 7.41 -2.39 -0.02 1.82 16 48 H 0.09 1.82 7.44 -2.39 -0.02 1.80 16 Total: -1.00 -62.82 357.42 0.88 -61.94 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.28 Total: 37.82 kcal Atomic # 6 Polarization: -61.28 SS G_CDS: 4.05 Total: -57.23 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -3.91 Total: -67.41 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -1.56 Total: -16.65 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -62.82 0.88 -61.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.124 kcal (2) G-P(sol) polarization free energy of solvation -62.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds