Wall clock time and date at job start Tue Mar 31 2020 07:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 108.73807 * 2 1 4 4 O 1.42897 * 109.47037 * 301.69204 * 3 2 1 5 5 C 1.50461 * 108.77620 * 241.69084 * 2 1 3 6 6 C 1.54504 * 108.84694 * 331.24573 * 5 2 1 7 7 C 1.45863 * 111.59396 * 282.79447 * 6 5 2 8 8 N 1.47799 * 112.82813 * 61.37758 * 7 6 5 9 9 C 1.46908 * 111.00248 * 153.81752 * 8 7 6 10 10 C 1.50704 * 109.46540 * 74.81604 * 9 8 7 11 11 C 1.37632 * 120.12591 * 274.28334 * 10 9 8 12 12 C 1.38612 * 120.24946 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.50058 * 0.02562 * 12 11 10 14 14 C 1.37600 * 120.24693 * 0.02608 * 13 12 11 15 15 C 1.40694 * 120.12619 * 94.01422 * 10 9 8 16 16 C 1.41392 * 120.24582 * 359.97438 * 15 10 9 17 17 H 1.08005 * 119.99862 * 32.35733 * 16 15 10 18 18 C 1.39940 * 120.00201 * 212.35569 * 16 15 10 19 19 N 1.30832 * 119.99879 * 13.04110 * 18 16 15 20 20 Si 1.86797 * 120.00534 * 193.04040 * 18 16 15 21 21 H 1.48498 * 109.47274 * 89.99669 * 20 18 16 22 22 H 1.48498 * 109.47431 * 210.00220 * 20 18 16 23 23 H 1.48506 * 109.46952 * 330.00253 * 20 18 16 24 24 C 1.44371 * 109.41844 * 276.59989 * 8 7 6 25 25 C 1.54070 * 111.88891 * 96.56407 * 24 8 7 26 26 H 1.09004 * 109.46648 * 188.14071 * 1 2 3 27 27 H 1.08998 * 109.47239 * 308.13711 * 1 2 3 28 28 H 1.09000 * 109.47211 * 68.14550 * 1 2 3 29 29 H 1.08998 * 109.47320 * 61.68908 * 3 2 1 30 30 H 1.08997 * 109.47529 * 181.69361 * 3 2 1 31 31 H 0.96703 * 114.00348 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.58002 * 211.43325 * 5 2 1 33 33 H 1.09005 * 109.57302 * 91.05238 * 5 2 1 34 34 H 1.08997 * 109.05539 * 162.24621 * 6 5 2 35 35 H 1.09005 * 109.05322 * 43.33414 * 6 5 2 36 36 H 1.09005 * 108.79380 * 182.20256 * 7 6 5 37 37 H 1.09000 * 108.79548 * 300.54156 * 7 6 5 38 38 H 1.08993 * 109.47097 * 194.81442 * 9 8 7 39 39 H 1.09001 * 109.47014 * 314.81908 * 9 8 7 40 40 H 1.08003 * 119.88264 * 0.02562 * 11 10 9 41 41 H 1.07999 * 119.75558 * 180.02562 * 12 11 10 42 42 H 1.08003 * 119.87806 * 179.97438 * 13 12 11 43 43 H 1.07999 * 120.12395 * 179.97438 * 14 13 12 44 44 H 0.97000 * 120.00000 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.02614 * 335.94849 * 24 8 7 46 46 H 1.08995 * 109.02637 * 217.18222 * 24 8 7 47 47 H 1.08995 * 108.91776 * 198.18776 * 25 24 8 48 48 H 1.09002 * 108.91662 * 79.63811 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0214 1.4489 0.0000 4 8 1.5042 2.1273 -1.1464 5 6 2.0142 -0.6756 -1.2542 6 6 0.9612 -1.7146 -1.6999 7 6 1.0257 -2.9258 -0.8896 8 7 0.7523 -2.6739 0.5408 9 6 0.2199 -3.8768 1.1949 10 6 1.3355 -4.8672 1.4095 11 6 1.6826 -5.7444 0.4074 12 6 2.7086 -6.6560 0.6018 13 6 3.3960 -6.6958 1.8053 14 6 3.0652 -5.8290 2.8214 15 6 2.0297 -4.8947 2.6329 16 6 1.6860 -3.9941 3.6673 17 1 0.6621 -3.6705 3.7834 18 6 2.6723 -3.5220 4.5405 19 7 3.9370 -3.7012 4.2572 20 14 2.1835 -2.6361 6.1107 21 1 2.0338 -3.6231 7.2100 22 1 3.2340 -1.6501 6.4704 23 1 0.8938 -1.9306 5.8999 24 6 1.9621 -2.2263 1.1892 25 6 2.0265 -0.6901 1.2876 26 1 -0.3633 -1.0174 0.1455 27 1 -0.3633 0.6346 0.8083 28 1 -0.3634 0.3825 -0.9538 29 1 1.6766 1.9496 0.9047 30 1 3.1109 1.4631 -0.0304 31 1 1.7755 3.0533 -1.2112 32 1 2.9614 -1.1773 -1.0564 33 1 2.1496 0.0674 -2.0402 34 1 1.1375 -1.9748 -2.7436 35 1 -0.0326 -1.2766 -1.6066 36 1 0.2935 -3.6399 -1.2666 37 1 2.0207 -3.3601 -0.9859 38 1 -0.2147 -3.6052 2.1568 39 1 -0.5470 -4.3247 0.5630 40 1 1.1543 -5.7220 -0.5343 41 1 2.9746 -7.3404 -0.1902 42 1 4.1934 -7.4105 1.9460 43 1 3.6017 -5.8620 3.7582 44 1 4.6207 -3.3737 4.8623 45 1 2.8219 -2.5815 0.6212 46 1 2.0039 -2.6479 2.1934 47 1 3.0579 -0.3909 1.4738 48 1 1.4090 -0.3634 2.1243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:14 Heat of formation + Delta-G solvation = -23.600406 kcal Electronic energy + Delta-G solvation = -26934.881567 eV Core-core repulsion = 23568.309170 eV Total energy + Delta-G solvation = -3366.572397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.85089 -38.00678 -36.44526 -34.30204 -33.74102 -32.21162 -30.20935 -29.58158 -27.82072 -26.45307 -25.69376 -25.22496 -23.74804 -22.22837 -20.86212 -20.26942 -18.96155 -17.73997 -17.20766 -17.05442 -15.74393 -15.47244 -15.40201 -14.62939 -14.51152 -14.18560 -13.70915 -13.66702 -13.36764 -13.11660 -12.75586 -12.62909 -12.46010 -12.19257 -11.89935 -11.52194 -11.39131 -11.26267 -11.17797 -10.97723 -10.78607 -10.74225 -10.62934 -10.48334 -10.25330 -10.13568 -9.98751 -9.80073 -9.68499 -9.57109 -9.48303 -9.39573 -9.02709 -7.57893 -7.36237 -7.20977 -6.77203 -4.41868 2.73912 2.90155 3.06541 3.09479 3.17918 3.91697 4.39862 4.59121 4.76412 5.12770 5.27067 5.31431 5.50601 5.56097 5.72274 5.81783 5.87084 5.90310 5.97507 6.05347 6.11109 6.15337 6.18108 6.26306 6.34494 6.39848 6.42412 6.47740 6.52084 6.61835 6.65774 6.70854 6.75789 6.83951 6.92320 6.94419 7.10510 7.15227 7.22574 7.29441 7.35412 7.56928 7.72698 7.80004 7.91783 8.00055 8.04260 8.06955 8.23820 8.56722 8.83308 8.88705 10.18638 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.006335 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.134118 B = 4418.614462 C = 5873.510524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.080 3.920 4 O -0.569 6.569 5 C -0.100 4.100 6 C -0.122 4.122 7 C 0.053 3.947 8 N -0.511 5.511 9 C 0.113 3.887 10 C -0.220 4.220 11 C -0.087 4.087 12 C -0.233 4.233 13 C -0.109 4.109 14 C -0.154 4.154 15 C 0.126 3.874 16 C -0.468 4.468 17 H 0.082 0.918 18 C 0.079 3.921 19 N -0.799 5.799 20 Si 0.900 3.100 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.260 1.260 24 C 0.031 3.969 25 C -0.096 4.096 26 H 0.103 0.897 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.369 0.631 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.279 0.721 45 H 0.028 0.972 46 H 0.132 0.868 47 H 0.049 0.951 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 7.162 -5.545 9.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.045 4.045 3 C 0.002 3.998 4 O -0.373 6.373 5 C -0.137 4.137 6 C -0.160 4.160 7 C -0.075 4.075 8 N -0.233 5.233 9 C -0.014 4.014 10 C -0.223 4.223 11 C -0.106 4.106 12 C -0.253 4.253 13 C -0.127 4.127 14 C -0.173 4.173 15 C 0.123 3.877 16 C -0.498 4.498 17 H 0.100 0.900 18 C -0.138 4.138 19 N -0.425 5.425 20 Si 0.725 3.275 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.184 1.184 24 C -0.097 4.097 25 C -0.134 4.134 26 H 0.121 0.879 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.215 0.785 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.150 0.850 47 H 0.068 0.932 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.189 7.023 -5.522 9.486 hybrid contribution 1.151 0.362 0.736 1.414 sum -2.038 7.385 -4.786 9.033 Atomic orbital electron populations 1.22270 0.94055 1.04419 0.99364 1.20228 0.97352 0.91218 0.95728 1.22458 0.96244 0.94044 0.87045 1.86506 1.76487 1.27500 1.46831 1.21301 0.98220 0.97584 0.96636 1.20777 1.01058 0.96391 0.97725 1.21005 0.99855 0.96591 0.90077 1.62023 1.29910 1.30154 1.01163 1.20956 0.94098 0.87564 0.98742 1.20413 1.04556 1.02303 0.95042 1.20409 0.97269 0.96073 0.96840 1.20399 1.02483 1.04288 0.98095 1.20701 0.98611 0.98966 0.94470 1.21254 1.01409 0.96151 0.98497 1.17434 0.90041 0.89804 0.90403 1.19409 0.95725 1.23916 1.10737 0.89988 1.25794 0.94461 0.95241 0.98301 1.69795 1.00593 1.37082 1.35020 0.86425 0.79605 0.79535 0.81962 1.19466 1.20403 1.18435 1.22435 0.89660 0.92994 1.04571 1.21971 0.99345 0.96670 0.95421 0.87898 0.94996 0.93772 0.94213 0.94420 0.78519 0.92803 0.91871 0.93108 0.90221 0.92707 0.94769 0.90229 0.92896 0.89698 0.89722 0.89601 0.87109 0.90969 0.95344 0.85045 0.93234 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 6.45 37.15 0.24 -2.00 16 2 C -0.05 -0.70 0.57 -155.10 -0.09 -0.78 16 3 C 0.08 1.07 5.66 37.16 0.21 1.28 16 4 O -0.57 -7.17 11.99 -35.23 -0.42 -7.59 16 5 C -0.10 -1.55 4.87 -27.21 -0.13 -1.68 16 6 C -0.12 -1.84 5.21 -29.32 -0.15 -2.00 16 7 C 0.05 0.89 3.85 -6.71 -0.03 0.87 16 8 N -0.51 -9.35 2.38 -240.92 -0.57 -9.92 16 9 C 0.11 2.21 5.37 -4.97 -0.03 2.19 16 10 C -0.22 -4.88 4.28 -103.91 -0.44 -5.33 16 11 C -0.09 -1.87 8.73 -39.66 -0.35 -2.22 16 12 C -0.23 -5.12 10.05 -39.29 -0.39 -5.51 16 13 C -0.11 -2.50 10.02 -39.66 -0.40 -2.89 16 14 C -0.15 -3.81 8.64 -38.87 -0.34 -4.15 16 15 C 0.13 3.06 4.81 -106.83 -0.51 2.55 16 16 C -0.47 -11.20 5.87 -37.75 -0.22 -11.42 16 17 H 0.08 1.93 6.38 -52.48 -0.33 1.59 16 18 C 0.08 1.86 5.03 -17.34 -0.09 1.77 16 19 N -0.80 -19.50 11.25 55.55 0.62 -18.88 16 20 Si 0.90 18.00 29.58 -169.99 -5.03 12.97 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 C 0.03 0.63 4.12 -4.62 -0.02 0.61 16 25 C -0.10 -1.68 4.98 -25.50 -0.13 -1.80 16 26 H 0.10 1.71 4.59 -51.93 -0.24 1.47 16 27 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.04 0.67 7.02 -51.93 -0.36 0.31 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.37 2.91 9.12 45.56 0.42 3.33 16 32 H 0.05 0.90 7.15 -51.93 -0.37 0.53 16 33 H 0.06 0.95 6.95 -51.93 -0.36 0.59 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.19 4.98 -51.93 -0.26 0.94 16 36 H 0.05 0.89 7.39 -51.93 -0.38 0.50 16 37 H 0.03 0.65 6.89 -51.93 -0.36 0.29 16 38 H 0.08 1.61 6.19 -51.93 -0.32 1.29 16 39 H 0.05 0.95 7.62 -51.93 -0.40 0.56 16 40 H 0.08 1.66 7.74 -52.48 -0.41 1.25 16 41 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 43 H 0.11 2.85 6.62 -52.49 -0.35 2.50 16 44 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 45 H 0.03 0.63 6.51 -51.93 -0.34 0.29 16 46 H 0.13 3.00 3.31 -51.93 -0.17 2.83 16 47 H 0.05 0.85 7.98 -51.93 -0.41 0.44 16 48 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -25.44 346.38 -9.78 -35.22 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.73 Total: 13.52 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -2.86 Total: -30.53 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.05 Total: -28.80 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.42 Total: -7.59 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -25.44 -9.78 -35.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.616 kcal (2) G-P(sol) polarization free energy of solvation -25.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds