Wall clock time and date at job start Tue Mar 31 2020 07:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 108.73807 * 2 1 4 4 O 1.42897 * 109.47037 * 301.69204 * 3 2 1 5 5 C 1.50461 * 108.77620 * 241.69084 * 2 1 3 6 6 C 1.54504 * 108.84694 * 331.24573 * 5 2 1 7 7 C 1.45863 * 111.59396 * 282.79447 * 6 5 2 8 8 N 1.47799 * 112.82813 * 61.37758 * 7 6 5 9 9 C 1.46908 * 111.00248 * 153.81752 * 8 7 6 10 10 C 1.50704 * 109.46540 * 74.81604 * 9 8 7 11 11 C 1.37632 * 120.12591 * 274.28334 * 10 9 8 12 12 C 1.38612 * 120.24946 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.50058 * 0.02562 * 12 11 10 14 14 C 1.37600 * 120.24693 * 0.02608 * 13 12 11 15 15 C 1.40694 * 120.12619 * 94.01422 * 10 9 8 16 16 C 1.41392 * 120.24582 * 359.97438 * 15 10 9 17 17 H 1.08005 * 119.99862 * 32.35733 * 16 15 10 18 18 C 1.39940 * 120.00201 * 212.35569 * 16 15 10 19 19 N 1.30832 * 119.99879 * 13.04110 * 18 16 15 20 20 Si 1.86797 * 120.00534 * 193.04040 * 18 16 15 21 21 H 1.48498 * 109.47274 * 89.99669 * 20 18 16 22 22 H 1.48498 * 109.47431 * 210.00220 * 20 18 16 23 23 H 1.48506 * 109.46952 * 330.00253 * 20 18 16 24 24 C 1.44371 * 109.41844 * 276.59989 * 8 7 6 25 25 C 1.54070 * 111.88891 * 96.56407 * 24 8 7 26 26 H 1.09004 * 109.46648 * 188.14071 * 1 2 3 27 27 H 1.08998 * 109.47239 * 308.13711 * 1 2 3 28 28 H 1.09000 * 109.47211 * 68.14550 * 1 2 3 29 29 H 1.08998 * 109.47320 * 61.68908 * 3 2 1 30 30 H 1.08997 * 109.47529 * 181.69361 * 3 2 1 31 31 H 0.96703 * 114.00348 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.58002 * 211.43325 * 5 2 1 33 33 H 1.09005 * 109.57302 * 91.05238 * 5 2 1 34 34 H 1.08997 * 109.05539 * 162.24621 * 6 5 2 35 35 H 1.09005 * 109.05322 * 43.33414 * 6 5 2 36 36 H 1.09005 * 108.79380 * 182.20256 * 7 6 5 37 37 H 1.09000 * 108.79548 * 300.54156 * 7 6 5 38 38 H 1.08993 * 109.47097 * 194.81442 * 9 8 7 39 39 H 1.09001 * 109.47014 * 314.81908 * 9 8 7 40 40 H 1.08003 * 119.88264 * 0.02562 * 11 10 9 41 41 H 1.07999 * 119.75558 * 180.02562 * 12 11 10 42 42 H 1.08003 * 119.87806 * 179.97438 * 13 12 11 43 43 H 1.07999 * 120.12395 * 179.97438 * 14 13 12 44 44 H 0.97000 * 120.00000 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.02614 * 335.94849 * 24 8 7 46 46 H 1.08995 * 109.02637 * 217.18222 * 24 8 7 47 47 H 1.08995 * 108.91776 * 198.18776 * 25 24 8 48 48 H 1.09002 * 108.91662 * 79.63811 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0214 1.4489 0.0000 4 8 1.5042 2.1273 -1.1464 5 6 2.0142 -0.6756 -1.2542 6 6 0.9612 -1.7146 -1.6999 7 6 1.0257 -2.9258 -0.8896 8 7 0.7523 -2.6739 0.5408 9 6 0.2199 -3.8768 1.1949 10 6 1.3355 -4.8672 1.4095 11 6 1.6826 -5.7444 0.4074 12 6 2.7086 -6.6560 0.6018 13 6 3.3960 -6.6958 1.8053 14 6 3.0652 -5.8290 2.8214 15 6 2.0297 -4.8947 2.6329 16 6 1.6860 -3.9941 3.6673 17 1 0.6621 -3.6705 3.7834 18 6 2.6723 -3.5220 4.5405 19 7 3.9370 -3.7012 4.2572 20 14 2.1835 -2.6361 6.1107 21 1 2.0338 -3.6231 7.2100 22 1 3.2340 -1.6501 6.4704 23 1 0.8938 -1.9306 5.8999 24 6 1.9621 -2.2263 1.1892 25 6 2.0265 -0.6901 1.2876 26 1 -0.3633 -1.0174 0.1455 27 1 -0.3633 0.6346 0.8083 28 1 -0.3634 0.3825 -0.9538 29 1 1.6766 1.9496 0.9047 30 1 3.1109 1.4631 -0.0304 31 1 1.7755 3.0533 -1.2112 32 1 2.9614 -1.1773 -1.0564 33 1 2.1496 0.0674 -2.0402 34 1 1.1375 -1.9748 -2.7436 35 1 -0.0326 -1.2766 -1.6066 36 1 0.2935 -3.6399 -1.2666 37 1 2.0207 -3.3601 -0.9859 38 1 -0.2147 -3.6052 2.1568 39 1 -0.5470 -4.3247 0.5630 40 1 1.1543 -5.7220 -0.5343 41 1 2.9746 -7.3404 -0.1902 42 1 4.1934 -7.4105 1.9460 43 1 3.6017 -5.8620 3.7582 44 1 4.6207 -3.3737 4.8623 45 1 2.8219 -2.5815 0.6212 46 1 2.0039 -2.6479 2.1934 47 1 3.0579 -0.3909 1.4738 48 1 1.4090 -0.3634 2.1243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:13 Heat of formation + Delta-G solvation = -36.276700 kcal Electronic energy + Delta-G solvation = -26935.431252 eV Core-core repulsion = 23568.309170 eV Total energy + Delta-G solvation = -3367.122082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26791 -39.56747 -37.70465 -35.62496 -35.52356 -33.58105 -31.87720 -31.35388 -29.29767 -27.76235 -27.05840 -26.87010 -25.28960 -23.62459 -22.60765 -21.86316 -20.54008 -19.04320 -18.88734 -18.17003 -17.23115 -17.07247 -16.76935 -16.26269 -15.91943 -15.58754 -15.29984 -15.22681 -14.73710 -14.52350 -14.37883 -14.05915 -13.85908 -13.70973 -13.23983 -13.17915 -12.99115 -12.81233 -12.79593 -12.52346 -12.35155 -12.20466 -12.01398 -11.96488 -11.72003 -11.62406 -11.32703 -11.26864 -11.12199 -11.09486 -10.93935 -10.71217 -10.67797 -9.29563 -9.16071 -8.84105 -8.54823 -6.25817 0.99343 1.11086 1.41082 1.50114 1.52763 2.23590 2.81299 3.26640 3.41090 3.74847 3.93365 4.03485 4.08186 4.32551 4.37366 4.43433 4.46686 4.49723 4.58468 4.64306 4.66894 4.67474 4.74073 4.81949 4.84348 4.96517 4.99402 5.06431 5.08600 5.17497 5.24967 5.30866 5.32244 5.36069 5.36296 5.49561 5.51899 5.58052 5.66363 5.73528 5.78631 5.92028 6.03577 6.12825 6.19007 6.39214 6.47874 6.51770 6.74843 6.98446 7.01495 7.07852 8.42642 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.006335 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.134118 B = 4418.614462 C = 5873.510524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 C 0.085 3.915 4 O -0.579 6.579 5 C -0.096 4.096 6 C -0.119 4.119 7 C 0.057 3.943 8 N -0.499 5.499 9 C 0.116 3.884 10 C -0.221 4.221 11 C -0.091 4.091 12 C -0.237 4.237 13 C -0.118 4.118 14 C -0.183 4.183 15 C 0.103 3.897 16 C -0.480 4.480 17 H 0.080 0.920 18 C 0.045 3.955 19 N -0.831 5.831 20 Si 0.960 3.040 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.256 1.256 24 C 0.042 3.958 25 C -0.091 4.091 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.392 0.608 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.011 0.989 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.283 0.717 45 H -0.002 1.002 46 H 0.106 0.894 47 H 0.045 0.955 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 8.405 -6.879 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 C 0.008 3.992 4 O -0.387 6.387 5 C -0.134 4.134 6 C -0.156 4.156 7 C -0.070 4.070 8 N -0.220 5.220 9 C -0.011 4.011 10 C -0.223 4.223 11 C -0.110 4.110 12 C -0.256 4.256 13 C -0.137 4.137 14 C -0.202 4.202 15 C 0.101 3.899 16 C -0.510 4.510 17 H 0.098 0.902 18 C -0.169 4.169 19 N -0.457 5.457 20 Si 0.782 3.218 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.179 1.179 24 C -0.087 4.087 25 C -0.130 4.130 26 H 0.110 0.890 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.241 0.759 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.016 0.984 46 H 0.124 0.876 47 H 0.064 0.936 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.446 8.279 -6.870 11.640 hybrid contribution 1.560 -0.065 1.056 1.885 sum -2.886 8.214 -5.813 10.469 Atomic orbital electron populations 1.22157 0.93744 1.03695 0.99669 1.20168 0.97463 0.92594 0.94347 1.22262 0.96407 0.92779 0.87782 1.86434 1.76630 1.29385 1.46210 1.21262 0.97456 0.97733 0.96908 1.20760 1.01259 0.95351 0.98270 1.21033 0.98853 0.97907 0.89220 1.62119 1.28778 1.29249 1.01884 1.20961 0.93712 0.87472 0.98985 1.20722 1.04645 1.02557 0.94414 1.20721 0.97218 0.95468 0.97593 1.20740 1.02091 1.04577 0.98190 1.20936 0.99204 0.98935 0.94584 1.21237 1.02598 0.97819 0.98558 1.17712 0.90553 0.90069 0.91601 1.19498 0.95763 1.24252 1.11471 0.90166 1.26442 0.94192 0.95689 1.00597 1.69867 1.01505 1.38285 1.36076 0.85513 0.79389 0.78479 0.78389 1.19363 1.19942 1.17922 1.22216 0.89161 0.94686 1.02603 1.21884 0.99282 0.94967 0.96849 0.89016 0.94928 0.93164 0.93519 0.94020 0.75948 0.94678 0.90982 0.91273 0.89451 0.91330 0.97094 0.91290 0.90729 0.87197 0.87167 0.87999 0.89163 0.90706 0.98399 0.87630 0.93591 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 6.45 71.98 0.46 -3.45 16 2 C -0.05 -1.33 0.57 -52.57 -0.03 -1.36 16 3 C 0.09 2.11 5.66 71.98 0.41 2.51 16 4 O -0.58 -12.84 11.99 -148.98 -1.79 -14.63 16 5 C -0.10 -2.83 4.87 30.28 0.15 -2.68 16 6 C -0.12 -3.33 5.21 28.92 0.15 -3.17 16 7 C 0.06 1.86 3.85 83.94 0.32 2.18 16 8 N -0.50 -17.92 2.38 -916.13 -2.18 -20.10 16 9 C 0.12 4.45 5.37 85.56 0.46 4.91 16 10 C -0.22 -9.79 4.28 -19.41 -0.08 -9.88 16 11 C -0.09 -3.83 8.73 22.22 0.19 -3.63 16 12 C -0.24 -10.15 10.05 22.46 0.23 -9.92 16 13 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 14 C -0.18 -9.38 8.64 22.73 0.20 -9.18 16 15 C 0.10 5.16 4.81 -21.29 -0.10 5.06 16 16 C -0.48 -23.65 5.87 23.46 0.14 -23.51 16 17 H 0.08 3.87 6.38 -2.91 -0.02 3.85 16 18 C 0.05 2.16 5.03 85.25 0.43 2.59 16 19 N -0.83 -42.08 11.25 21.83 0.25 -41.84 16 20 Si 0.96 37.42 29.58 68.60 2.03 39.45 16 21 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 24 C 0.04 1.70 4.12 87.14 0.36 2.06 16 25 C -0.09 -3.19 4.98 31.39 0.16 -3.04 16 26 H 0.09 2.86 4.59 -2.39 -0.01 2.84 16 27 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 28 H 0.05 1.39 7.02 -2.39 -0.02 1.37 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.39 4.90 9.12 -74.05 -0.68 4.23 16 32 H 0.03 1.15 7.15 -2.39 -0.02 1.14 16 33 H 0.07 2.00 6.95 -2.38 -0.02 1.99 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 2.36 4.98 -2.38 -0.01 2.35 16 36 H 0.07 2.04 7.39 -2.38 -0.02 2.02 16 37 H 0.01 0.40 6.89 -2.39 -0.02 0.39 16 38 H 0.07 2.80 6.19 -2.39 -0.01 2.78 16 39 H 0.07 2.53 7.62 -2.39 -0.02 2.51 16 40 H 0.11 4.01 7.74 -2.91 -0.02 3.99 16 41 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 43 H 0.09 4.91 6.62 -2.91 -0.02 4.89 16 44 H 0.28 13.28 8.30 -92.71 -0.77 12.51 16 45 H 0.00 -0.11 6.51 -2.39 -0.02 -0.13 16 46 H 0.11 4.97 3.31 -2.39 -0.01 4.96 16 47 H 0.05 1.60 7.98 -2.39 -0.02 1.58 16 48 H 0.05 1.94 7.98 -2.39 -0.02 1.92 16 Total: -1.00 -55.35 346.38 2.25 -53.09 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: 0.29 Total: 39.77 kcal Atomic # 6 Polarization: -59.41 SS G_CDS: 3.66 Total: -55.75 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -1.94 Total: -61.94 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.79 Total: -14.63 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -55.35 2.25 -53.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.817 kcal (2) G-P(sol) polarization free energy of solvation -55.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds