Wall clock time and date at job start Tue Mar 31 2020 07:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.67272 * 2 1 4 4 O 1.42902 * 109.46531 * 60.31363 * 3 2 1 5 5 C 1.54516 * 109.57443 * 120.31391 * 2 1 3 6 6 C 1.45871 * 111.67243 * 42.57186 * 5 2 1 7 7 C 1.53988 * 112.66420 * 61.49858 * 6 5 2 8 8 N 1.44295 * 108.31784 * 278.60106 * 7 6 5 9 9 C 1.46902 * 111.00373 * 221.34963 * 8 7 6 10 10 C 1.50699 * 109.46874 * 66.04511 * 9 8 7 11 11 C 1.37639 * 120.12521 * 259.97926 * 10 9 8 12 12 C 1.38616 * 120.24537 * 180.02562 * 11 10 9 13 13 C 1.38652 * 120.50311 * 0.02654 * 12 11 10 14 14 C 1.37607 * 120.24737 * 359.66597 * 13 12 11 15 15 C 1.40692 * 120.12728 * 80.00607 * 10 9 8 16 16 C 1.41392 * 120.24422 * 359.97408 * 15 10 9 17 17 H 1.07996 * 120.00635 * 335.07546 * 16 15 10 18 18 C 1.39954 * 119.99909 * 154.79537 * 16 15 10 19 19 N 1.30819 * 119.99718 * 344.72882 * 18 16 15 20 20 Si 1.86796 * 120.00015 * 164.72681 * 18 16 15 21 21 H 1.48501 * 109.47290 * 90.00041 * 20 18 16 22 22 H 1.48494 * 109.47132 * 209.99954 * 20 18 16 23 23 H 1.48501 * 109.46948 * 330.00278 * 20 18 16 24 24 C 1.47947 * 113.65111 * 95.39229 * 8 7 6 25 25 C 1.50543 * 109.57049 * 239.69376 * 2 1 3 26 26 H 1.08998 * 109.46938 * 306.24480 * 1 2 3 27 27 H 1.08999 * 109.47433 * 66.24051 * 1 2 3 28 28 H 1.08998 * 109.47216 * 186.24415 * 1 2 3 29 29 H 1.08993 * 109.46822 * 180.31088 * 3 2 1 30 30 H 1.08995 * 109.46871 * 300.31349 * 3 2 1 31 31 H 0.96704 * 113.99764 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.03892 * 282.00614 * 5 2 1 33 33 H 1.09000 * 109.03954 * 163.13337 * 5 2 1 34 34 H 1.09000 * 108.84593 * 300.67788 * 6 5 2 35 35 H 1.08997 * 108.76288 * 182.25991 * 6 5 2 36 36 H 1.08995 * 109.69296 * 158.89342 * 7 6 5 37 37 H 1.09004 * 109.69415 * 38.30746 * 7 6 5 38 38 H 1.09003 * 109.46925 * 306.04640 * 9 8 7 39 39 H 1.08992 * 109.47470 * 186.04778 * 9 8 7 40 40 H 1.07998 * 119.88235 * 0.02562 * 11 10 9 41 41 H 1.08000 * 119.74819 * 180.02562 * 12 11 10 42 42 H 1.07998 * 119.88032 * 179.97438 * 13 12 11 43 43 H 1.08001 * 120.12471 * 180.32745 * 14 13 12 44 44 H 0.96999 * 119.99611 * 180.02562 * 19 18 16 45 45 H 1.09003 * 108.71252 * 79.13534 * 24 8 7 46 46 H 1.09004 * 108.71234 * 197.14336 * 24 8 7 47 47 H 1.09000 * 108.78839 * 92.82912 * 25 2 1 48 48 H 1.08999 * 108.78676 * 211.15425 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0451 1.4408 0.0000 4 8 1.5771 2.1138 1.1705 5 6 2.0477 -0.7348 1.2568 6 6 1.2875 -1.9515 1.5208 7 6 1.3895 -2.9752 0.3750 8 7 0.4533 -2.5969 -0.6558 9 6 -0.2349 -3.7750 -1.2003 10 6 -1.1050 -4.3865 -0.1326 11 6 -0.6710 -5.4921 0.5629 12 6 -1.4695 -6.0569 1.5452 13 6 -2.7125 -5.5171 1.8383 14 6 -3.1640 -4.4082 1.1600 15 6 -2.3643 -3.8299 0.1567 16 6 -2.8206 -2.6942 -0.5513 17 1 -2.1100 -2.0169 -1.0015 18 6 -4.1934 -2.4509 -0.6738 19 7 -5.0523 -3.4007 -0.4064 20 14 -4.7990 -0.7701 -1.2189 21 1 -4.9143 -0.7415 -2.6992 22 1 -6.1284 -0.5027 -0.6137 23 1 -3.8358 0.2703 -0.7773 24 6 1.0566 -1.7882 -1.7378 25 6 2.0343 -0.7158 -1.2246 26 1 -0.3633 0.6076 0.8288 27 1 -0.3634 0.4140 -0.9405 28 1 -0.3633 -1.0215 0.1118 29 1 3.1350 1.4369 -0.0056 30 1 1.6790 1.9574 -0.8871 31 1 1.8663 3.0342 1.2371 32 1 1.9649 -0.0702 2.1167 33 1 3.0959 -0.9953 1.1099 34 1 0.2398 -1.6878 1.6651 35 1 1.6642 -2.4086 2.4358 36 1 1.1434 -3.9695 0.7478 37 1 2.4016 -2.9741 -0.0296 38 1 0.5029 -4.5062 -1.5307 39 1 -0.8538 -3.4757 -2.0460 40 1 0.2953 -5.9212 0.3426 41 1 -1.1208 -6.9241 2.0862 42 1 -3.3266 -5.9655 2.6052 43 1 -4.1303 -3.9861 1.3936 44 1 -6.0038 -3.2321 -0.4916 45 1 1.5918 -2.4538 -2.4150 46 1 0.2583 -1.2964 -2.2936 47 1 2.1998 0.0157 -2.0156 48 1 2.9839 -1.1943 -0.9854 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:16 Heat of formation + Delta-G solvation = -27.637018 kcal Electronic energy + Delta-G solvation = -26796.918876 eV Core-core repulsion = 23430.171438 eV Total energy + Delta-G solvation = -3366.747438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.87892 -37.75623 -36.50802 -34.39137 -33.53993 -32.33746 -30.49680 -29.36170 -27.71740 -26.50819 -25.90612 -25.13077 -23.45777 -22.63505 -20.88317 -19.73780 -19.22944 -17.92185 -17.22584 -17.06724 -15.78788 -15.46984 -15.11851 -14.81477 -14.75972 -14.27304 -13.80463 -13.71058 -13.40614 -13.11688 -12.75073 -12.55883 -12.53417 -12.15260 -11.85684 -11.53514 -11.40612 -11.26087 -11.03204 -10.97553 -10.90790 -10.65700 -10.54326 -10.47844 -10.32806 -10.26785 -10.09594 -9.95022 -9.81219 -9.63885 -9.41339 -9.18092 -9.05311 -7.37762 -7.25780 -7.20750 -6.64926 -4.23218 2.85249 3.03566 3.13713 3.19770 3.32799 4.02077 4.30404 4.56344 4.77857 4.87347 5.10030 5.22812 5.36710 5.46325 5.61280 5.62635 5.65843 5.79967 5.84808 5.91834 5.94538 6.05739 6.14606 6.17146 6.23821 6.28012 6.34064 6.47405 6.48677 6.55251 6.57455 6.60234 6.68502 6.84088 6.89461 6.92010 6.99842 7.19734 7.36329 7.47175 7.55037 7.69854 7.72257 7.85411 7.88060 8.07818 8.18081 8.23369 8.41505 8.77507 9.03902 9.10727 10.28807 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.006389 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.784478 B = 4381.429948 C = 5712.469198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.048 4.048 3 C 0.086 3.914 4 O -0.565 6.565 5 C -0.095 4.095 6 C -0.118 4.118 7 C 0.064 3.936 8 N -0.526 5.526 9 C 0.126 3.874 10 C -0.191 4.191 11 C -0.087 4.087 12 C -0.246 4.246 13 C -0.107 4.107 14 C -0.163 4.163 15 C 0.131 3.869 16 C -0.443 4.443 17 H 0.090 0.910 18 C 0.074 3.926 19 N -0.798 5.798 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.257 1.257 24 C 0.066 3.934 25 C -0.107 4.107 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.130 0.870 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.370 0.630 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.013 0.987 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.277 0.723 45 H 0.024 0.976 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.448 7.113 -1.164 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.048 4.048 3 C 0.009 3.991 4 O -0.369 6.369 5 C -0.132 4.132 6 C -0.156 4.156 7 C -0.064 4.064 8 N -0.250 5.250 9 C 0.000 4.000 10 C -0.193 4.193 11 C -0.106 4.106 12 C -0.265 4.265 13 C -0.126 4.126 14 C -0.183 4.183 15 C 0.128 3.872 16 C -0.473 4.473 17 H 0.108 0.892 18 C -0.143 4.143 19 N -0.424 5.424 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.181 1.181 24 C -0.061 4.061 25 C -0.144 4.144 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.148 0.852 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.216 0.784 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.031 0.969 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.602 6.765 -0.877 12.607 hybrid contribution 0.536 0.814 -0.786 1.252 sum 11.137 7.579 -1.663 13.574 Atomic orbital electron populations 1.22441 0.92191 1.07497 0.99768 1.20248 0.98388 0.91289 0.94911 1.22322 0.96251 0.93665 0.86887 1.86553 1.77647 1.28390 1.44294 1.20505 0.98051 0.97063 0.97607 1.20523 1.02735 0.95194 0.97194 1.21771 0.92946 0.99017 0.92674 1.60850 1.29937 1.22097 1.12098 1.20657 0.94182 0.88611 0.96512 1.19430 0.98301 0.98888 1.02705 1.20339 0.97034 0.96483 0.96721 1.20268 0.97403 1.03852 1.04987 1.20663 0.95392 0.97329 0.99187 1.21391 1.01332 0.97845 0.97719 1.17347 0.89561 0.90868 0.89384 1.19721 0.91230 1.07434 1.28881 0.89153 1.25945 0.97269 0.97570 0.93522 1.69832 1.03434 1.32281 1.36900 0.86451 0.78662 0.83351 0.79170 1.19788 1.20431 1.18101 1.22269 0.96576 0.94388 0.92869 1.21391 0.98428 0.97393 0.97231 0.93832 0.94641 0.85212 0.94643 0.94191 0.78416 0.91875 0.93893 0.89813 0.93288 0.90590 0.95570 0.96852 0.90765 0.90113 0.90022 0.89892 0.86479 0.91186 0.95809 0.91059 0.92153 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 6.69 37.16 0.25 -2.55 16 2 C -0.05 -0.68 0.59 -154.94 -0.09 -0.77 16 3 C 0.09 1.05 5.70 37.16 0.21 1.26 16 4 O -0.56 -7.12 12.00 -35.23 -0.42 -7.54 16 5 C -0.09 -1.38 4.45 -29.31 -0.13 -1.51 16 6 C -0.12 -1.93 5.17 -29.59 -0.15 -2.08 16 7 C 0.06 1.07 5.11 -4.70 -0.02 1.05 16 8 N -0.53 -9.19 1.70 -236.08 -0.40 -9.59 16 9 C 0.13 2.48 4.17 -4.98 -0.02 2.46 16 10 C -0.19 -4.36 4.85 -103.91 -0.50 -4.86 16 11 C -0.09 -1.91 8.19 -39.66 -0.32 -2.23 16 12 C -0.25 -5.53 10.05 -39.29 -0.39 -5.93 16 13 C -0.11 -2.54 10.02 -39.66 -0.40 -2.94 16 14 C -0.16 -4.23 8.69 -38.87 -0.34 -4.57 16 15 C 0.13 3.34 5.57 -106.83 -0.60 2.74 16 16 C -0.44 -11.16 8.21 -37.74 -0.31 -11.47 16 17 H 0.09 2.21 6.43 -52.49 -0.34 1.87 16 18 C 0.07 1.82 5.19 -17.34 -0.09 1.73 16 19 N -0.80 -20.52 10.87 55.55 0.60 -19.91 16 20 Si 0.90 18.84 29.59 -169.99 -5.03 13.81 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 C 0.07 0.99 4.58 -2.77 -0.01 0.98 16 25 C -0.11 -1.39 4.68 -27.48 -0.13 -1.52 16 26 H 0.04 0.80 7.53 -51.93 -0.39 0.41 16 27 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 28 H 0.13 2.54 3.37 -51.93 -0.17 2.37 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.37 2.84 9.12 45.56 0.42 3.26 16 32 H 0.06 0.96 7.26 -51.93 -0.38 0.58 16 33 H 0.04 0.57 7.59 -51.93 -0.39 0.18 16 34 H 0.08 1.61 6.24 -51.93 -0.32 1.28 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.37 5.36 -51.93 -0.28 1.10 16 37 H 0.03 0.40 6.79 -51.93 -0.35 0.05 16 38 H 0.01 0.25 7.98 -51.93 -0.41 -0.17 16 39 H 0.07 1.53 7.22 -51.93 -0.38 1.15 16 40 H 0.08 1.59 7.78 -52.49 -0.41 1.18 16 41 H 0.08 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.12 3.16 6.14 -52.49 -0.32 2.84 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 45 H 0.02 0.34 8.02 -51.93 -0.42 -0.08 16 46 H 0.07 1.11 7.71 -51.93 -0.40 0.71 16 47 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 48 H 0.05 0.69 6.65 -51.93 -0.35 0.34 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -27.14 352.93 -9.94 -37.08 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.95 Total: 11.05 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: -3.05 Total: -30.22 kcal Atomic # 7 Polarization: -29.71 SS G_CDS: 0.20 Total: -29.50 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.42 Total: -7.54 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.14 -9.94 -37.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.439 kcal (2) G-P(sol) polarization free energy of solvation -27.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds