Wall clock time and date at job start Tue Mar 31 2020 07:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.67272 * 2 1 4 4 O 1.42902 * 109.46531 * 60.31363 * 3 2 1 5 5 C 1.54516 * 109.57443 * 120.31391 * 2 1 3 6 6 C 1.45871 * 111.67243 * 42.57186 * 5 2 1 7 7 C 1.53988 * 112.66420 * 61.49858 * 6 5 2 8 8 N 1.44295 * 108.31784 * 278.60106 * 7 6 5 9 9 C 1.46902 * 111.00373 * 221.34963 * 8 7 6 10 10 C 1.50699 * 109.46874 * 66.04511 * 9 8 7 11 11 C 1.37639 * 120.12521 * 259.97926 * 10 9 8 12 12 C 1.38616 * 120.24537 * 180.02562 * 11 10 9 13 13 C 1.38652 * 120.50311 * 0.02654 * 12 11 10 14 14 C 1.37607 * 120.24737 * 359.66597 * 13 12 11 15 15 C 1.40692 * 120.12728 * 80.00607 * 10 9 8 16 16 C 1.41392 * 120.24422 * 359.97408 * 15 10 9 17 17 H 1.07996 * 120.00635 * 335.07546 * 16 15 10 18 18 C 1.39954 * 119.99909 * 154.79537 * 16 15 10 19 19 N 1.30819 * 119.99718 * 344.72882 * 18 16 15 20 20 Si 1.86796 * 120.00015 * 164.72681 * 18 16 15 21 21 H 1.48501 * 109.47290 * 90.00041 * 20 18 16 22 22 H 1.48494 * 109.47132 * 209.99954 * 20 18 16 23 23 H 1.48501 * 109.46948 * 330.00278 * 20 18 16 24 24 C 1.47947 * 113.65111 * 95.39229 * 8 7 6 25 25 C 1.50543 * 109.57049 * 239.69376 * 2 1 3 26 26 H 1.08998 * 109.46938 * 306.24480 * 1 2 3 27 27 H 1.08999 * 109.47433 * 66.24051 * 1 2 3 28 28 H 1.08998 * 109.47216 * 186.24415 * 1 2 3 29 29 H 1.08993 * 109.46822 * 180.31088 * 3 2 1 30 30 H 1.08995 * 109.46871 * 300.31349 * 3 2 1 31 31 H 0.96704 * 113.99764 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.03892 * 282.00614 * 5 2 1 33 33 H 1.09000 * 109.03954 * 163.13337 * 5 2 1 34 34 H 1.09000 * 108.84593 * 300.67788 * 6 5 2 35 35 H 1.08997 * 108.76288 * 182.25991 * 6 5 2 36 36 H 1.08995 * 109.69296 * 158.89342 * 7 6 5 37 37 H 1.09004 * 109.69415 * 38.30746 * 7 6 5 38 38 H 1.09003 * 109.46925 * 306.04640 * 9 8 7 39 39 H 1.08992 * 109.47470 * 186.04778 * 9 8 7 40 40 H 1.07998 * 119.88235 * 0.02562 * 11 10 9 41 41 H 1.08000 * 119.74819 * 180.02562 * 12 11 10 42 42 H 1.07998 * 119.88032 * 179.97438 * 13 12 11 43 43 H 1.08001 * 120.12471 * 180.32745 * 14 13 12 44 44 H 0.96999 * 119.99611 * 180.02562 * 19 18 16 45 45 H 1.09003 * 108.71252 * 79.13534 * 24 8 7 46 46 H 1.09004 * 108.71234 * 197.14336 * 24 8 7 47 47 H 1.09000 * 108.78839 * 92.82912 * 25 2 1 48 48 H 1.08999 * 108.78676 * 211.15425 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0451 1.4408 0.0000 4 8 1.5771 2.1138 1.1705 5 6 2.0477 -0.7348 1.2568 6 6 1.2875 -1.9515 1.5208 7 6 1.3895 -2.9752 0.3750 8 7 0.4533 -2.5969 -0.6558 9 6 -0.2349 -3.7750 -1.2003 10 6 -1.1050 -4.3865 -0.1326 11 6 -0.6710 -5.4921 0.5629 12 6 -1.4695 -6.0569 1.5452 13 6 -2.7125 -5.5171 1.8383 14 6 -3.1640 -4.4082 1.1600 15 6 -2.3643 -3.8299 0.1567 16 6 -2.8206 -2.6942 -0.5513 17 1 -2.1100 -2.0169 -1.0015 18 6 -4.1934 -2.4509 -0.6738 19 7 -5.0523 -3.4007 -0.4064 20 14 -4.7990 -0.7701 -1.2189 21 1 -4.9143 -0.7415 -2.6992 22 1 -6.1284 -0.5027 -0.6137 23 1 -3.8358 0.2703 -0.7773 24 6 1.0566 -1.7882 -1.7378 25 6 2.0343 -0.7158 -1.2246 26 1 -0.3633 0.6076 0.8288 27 1 -0.3634 0.4140 -0.9405 28 1 -0.3633 -1.0215 0.1118 29 1 3.1350 1.4369 -0.0056 30 1 1.6790 1.9574 -0.8871 31 1 1.8663 3.0342 1.2371 32 1 1.9649 -0.0702 2.1167 33 1 3.0959 -0.9953 1.1099 34 1 0.2398 -1.6878 1.6651 35 1 1.6642 -2.4086 2.4358 36 1 1.1434 -3.9695 0.7478 37 1 2.4016 -2.9741 -0.0296 38 1 0.5029 -4.5062 -1.5307 39 1 -0.8538 -3.4757 -2.0460 40 1 0.2953 -5.9212 0.3426 41 1 -1.1208 -6.9241 2.0862 42 1 -3.3266 -5.9655 2.6052 43 1 -4.1303 -3.9861 1.3936 44 1 -6.0038 -3.2321 -0.4916 45 1 1.5918 -2.4538 -2.4150 46 1 0.2583 -1.2964 -2.2936 47 1 2.1998 0.0157 -2.0156 48 1 2.9839 -1.1943 -0.9854 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:16 Heat of formation + Delta-G solvation = -41.445119 kcal Electronic energy + Delta-G solvation = -26797.517640 eV Core-core repulsion = 23430.171438 eV Total energy + Delta-G solvation = -3367.346202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12287 -39.41470 -37.67365 -35.68086 -35.38605 -33.54515 -32.15827 -31.20873 -29.04293 -27.86359 -27.20042 -26.86154 -24.88539 -23.82997 -22.73517 -21.32361 -20.70019 -19.06300 -18.93836 -18.17174 -17.18773 -17.02550 -16.54973 -16.24007 -15.98477 -15.77338 -15.29620 -15.21907 -14.86389 -14.42334 -14.27255 -14.07307 -13.79114 -13.42168 -13.38452 -13.24822 -12.84663 -12.74587 -12.66135 -12.64940 -12.35434 -12.14754 -12.10623 -11.93411 -11.88122 -11.50898 -11.27606 -11.23305 -11.12350 -11.06324 -10.96472 -10.82940 -10.64387 -9.14446 -9.11180 -8.64309 -8.50795 -6.16082 1.05730 1.19948 1.39453 1.50014 1.58183 2.25229 2.85265 3.21741 3.46585 3.77431 3.96870 4.05824 4.11041 4.27247 4.36235 4.41483 4.44770 4.52678 4.57059 4.61562 4.65259 4.69923 4.77812 4.78821 4.87679 4.89294 4.94593 5.01115 5.07911 5.17675 5.21260 5.23627 5.32240 5.38193 5.44494 5.47434 5.58514 5.61946 5.64668 5.67872 5.87483 6.09861 6.12885 6.29114 6.34534 6.46737 6.54009 6.68675 6.87581 7.03192 7.13936 7.22078 8.44554 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.006389 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.784478 B = 4381.429948 C = 5712.469198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.048 4.048 3 C 0.089 3.911 4 O -0.589 6.589 5 C -0.090 4.090 6 C -0.112 4.112 7 C 0.069 3.931 8 N -0.537 5.537 9 C 0.135 3.865 10 C -0.189 4.189 11 C -0.090 4.090 12 C -0.245 4.245 13 C -0.117 4.117 14 C -0.195 4.195 15 C 0.103 3.897 16 C -0.462 4.462 17 H 0.090 0.910 18 C 0.034 3.966 19 N -0.833 5.833 20 Si 0.962 3.038 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.261 1.261 24 C 0.064 3.936 25 C -0.101 4.101 26 H 0.020 0.980 27 H 0.030 0.970 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.391 0.609 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.030 0.970 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.281 0.719 45 H 0.038 0.962 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.321 7.803 -2.015 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.049 4.049 3 C 0.011 3.989 4 O -0.397 6.397 5 C -0.127 4.127 6 C -0.150 4.150 7 C -0.059 4.059 8 N -0.261 5.261 9 C 0.008 3.992 10 C -0.191 4.191 11 C -0.109 4.109 12 C -0.265 4.265 13 C -0.135 4.135 14 C -0.215 4.215 15 C 0.101 3.899 16 C -0.492 4.492 17 H 0.108 0.892 18 C -0.180 4.180 19 N -0.460 5.460 20 Si 0.785 3.215 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.185 1.185 24 C -0.062 4.062 25 C -0.138 4.138 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.240 0.760 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.489 7.465 -1.727 15.513 hybrid contribution -0.309 0.524 -0.450 0.757 sum 13.180 7.989 -2.177 15.565 Atomic orbital electron populations 1.22305 0.95092 1.05355 0.98440 1.20252 0.95842 0.93350 0.95407 1.22287 0.97543 0.92026 0.87036 1.86505 1.78265 1.30245 1.44648 1.20441 0.98898 0.95843 0.97548 1.20449 1.00706 0.96247 0.97571 1.21721 0.93775 0.98042 0.92362 1.60695 1.31029 1.21287 1.13119 1.20483 0.94088 0.89732 0.94862 1.19811 0.97674 0.98774 1.02845 1.20672 0.98105 0.95985 0.96126 1.20632 0.96667 1.04277 1.04885 1.20896 0.96396 0.96869 0.99388 1.21360 1.01209 0.99525 0.99416 1.17672 0.90923 0.91579 0.89748 1.19856 0.91782 1.07890 1.29623 0.89201 1.26655 0.97243 1.00568 0.93507 1.69906 1.03785 1.33958 1.38333 0.85490 0.77946 0.79003 0.79098 1.18783 1.19970 1.18486 1.22330 0.96802 0.94812 0.92288 1.21355 0.98082 0.97175 0.97230 0.96076 0.95101 0.87559 0.92137 0.93349 0.76019 0.92854 0.91577 0.93631 0.92793 0.92178 0.93227 0.95232 0.92338 0.87180 0.87290 0.88373 0.88718 0.90841 0.94378 0.92277 0.89790 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 6.69 71.98 0.48 -4.88 16 2 C -0.05 -1.26 0.59 -52.46 -0.03 -1.29 16 3 C 0.09 1.87 5.70 71.98 0.41 2.28 16 4 O -0.59 -13.73 12.00 -148.98 -1.79 -15.52 16 5 C -0.09 -2.43 4.45 28.92 0.13 -2.30 16 6 C -0.11 -3.55 5.17 28.74 0.15 -3.40 16 7 C 0.07 2.18 5.11 87.12 0.44 2.62 16 8 N -0.54 -18.29 1.70 -900.81 -1.53 -19.83 16 9 C 0.13 5.22 4.17 85.56 0.36 5.57 16 10 C -0.19 -8.66 4.85 -19.41 -0.09 -8.76 16 11 C -0.09 -3.85 8.19 22.22 0.18 -3.67 16 12 C -0.25 -10.78 10.05 22.46 0.23 -10.55 16 13 C -0.12 -5.64 10.02 22.22 0.22 -5.42 16 14 C -0.20 -10.55 8.69 22.73 0.20 -10.35 16 15 C 0.10 5.45 5.57 -21.29 -0.12 5.34 16 16 C -0.46 -24.22 8.21 23.46 0.19 -24.03 16 17 H 0.09 4.58 6.43 -2.91 -0.02 4.56 16 18 C 0.03 1.72 5.19 85.26 0.44 2.16 16 19 N -0.83 -44.65 10.87 21.83 0.24 -44.41 16 20 Si 0.96 39.90 29.59 68.60 2.03 41.93 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 C 0.06 1.80 4.58 86.41 0.40 2.20 16 25 C -0.10 -2.27 4.68 30.11 0.14 -2.13 16 26 H 0.02 0.78 7.53 -2.39 -0.02 0.76 16 27 H 0.03 1.04 7.86 -2.39 -0.02 1.02 16 28 H 0.11 4.27 3.37 -2.39 -0.01 4.27 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 31 H 0.39 5.13 9.12 -74.05 -0.68 4.45 16 32 H 0.05 1.55 7.26 -2.39 -0.02 1.53 16 33 H 0.07 1.50 7.59 -2.39 -0.02 1.49 16 34 H 0.04 1.80 6.24 -2.39 -0.01 1.79 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 2.07 5.36 -2.39 -0.01 2.06 16 37 H 0.05 1.33 6.79 -2.38 -0.02 1.31 16 38 H 0.03 1.04 7.98 -2.39 -0.02 1.02 16 39 H 0.06 2.43 7.22 -2.39 -0.02 2.41 16 40 H 0.11 4.03 7.78 -2.91 -0.02 4.00 16 41 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 42 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 43 H 0.09 5.44 6.14 -2.91 -0.02 5.42 16 44 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 45 H 0.04 0.96 8.02 -2.39 -0.02 0.94 16 46 H 0.06 1.78 7.71 -2.39 -0.02 1.76 16 47 H 0.08 1.54 7.70 -2.39 -0.02 1.52 16 48 H 0.07 1.43 6.65 -2.39 -0.02 1.41 16 Total: -1.00 -60.89 352.93 2.95 -57.94 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.28 Total: 36.51 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 3.73 Total: -56.62 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -1.30 Total: -64.24 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -1.79 Total: -15.52 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -60.89 2.95 -57.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.494 kcal (2) G-P(sol) polarization free energy of solvation -60.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds