Wall clock time and date at job start Tue Mar 31 2020 08:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53363 * 1 3 3 C 1.54133 * 107.75216 * 2 1 4 4 C 1.52936 * 109.15136 * 117.03979 * 2 1 3 5 5 N 1.47032 * 109.30619 * 75.43758 * 4 2 1 6 6 C 1.46909 * 110.98417 * 186.17930 * 5 4 2 7 7 C 1.50695 * 109.46860 * 164.54271 * 6 5 4 8 8 C 1.37643 * 120.12990 * 103.96158 * 7 6 5 9 9 C 1.38619 * 120.24705 * 179.97438 * 8 7 6 10 10 C 1.38658 * 120.50253 * 0.02562 * 9 8 7 11 11 C 1.37598 * 120.24570 * 359.73322 * 10 9 8 12 12 C 1.40702 * 120.12805 * 283.93255 * 7 6 5 13 13 C 1.41391 * 120.24067 * 0.02562 * 12 7 6 14 14 H 1.08007 * 120.00265 * 29.12524 * 13 12 7 15 15 C 1.39943 * 120.00134 * 209.39866 * 13 12 7 16 16 N 1.30830 * 120.00166 * 12.85301 * 15 13 12 17 17 Si 1.86803 * 120.00526 * 192.85694 * 15 13 12 18 18 H 1.48503 * 109.46717 * 59.99480 * 17 15 13 19 19 H 1.48499 * 109.47587 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46838 * 300.00227 * 17 15 13 21 21 C 1.47013 * 109.28565 * 63.44233 * 5 4 2 22 22 C 1.52913 * 109.37877 * 296.69935 * 21 5 4 23 23 C 1.53373 * 109.15778 * 284.25232 * 22 21 5 24 24 C 1.54144 * 107.99116 * 167.39513 * 22 21 5 25 25 O 1.41154 * 110.90853 * 241.17618 * 2 1 3 26 26 H 1.08998 * 109.47545 * 302.95964 * 1 2 3 27 27 H 1.09001 * 109.46919 * 62.95974 * 1 2 3 28 28 H 1.08999 * 109.46783 * 182.95653 * 1 2 3 29 29 H 1.08998 * 109.47293 * 177.79042 * 3 2 1 30 30 H 1.09002 * 109.46484 * 297.79135 * 3 2 1 31 31 H 1.08999 * 109.47289 * 57.78448 * 3 2 1 32 32 H 1.09026 * 109.58362 * 315.48526 * 4 2 1 33 33 H 1.09024 * 109.58655 * 195.39465 * 4 2 1 34 34 H 1.09003 * 109.47237 * 44.53639 * 6 5 4 35 35 H 1.09003 * 109.46993 * 284.53905 * 6 5 4 36 36 H 1.07996 * 119.87494 * 359.97237 * 8 7 6 37 37 H 1.07993 * 119.74455 * 179.97438 * 9 8 7 38 38 H 1.07995 * 119.87746 * 179.97438 * 10 9 8 39 39 H 1.08001 * 120.12503 * 180.27742 * 11 10 9 40 40 H 0.96992 * 120.00105 * 179.97438 * 16 15 13 41 41 H 1.09036 * 109.45522 * 56.77300 * 21 5 4 42 42 H 1.09048 * 109.44369 * 176.64551 * 21 5 4 43 43 H 1.08997 * 109.47498 * 184.20850 * 23 22 21 44 44 H 1.09004 * 109.46743 * 304.20366 * 23 22 21 45 45 H 1.09000 * 109.47034 * 64.20034 * 23 22 21 46 46 H 1.08996 * 109.47219 * 297.98226 * 24 22 21 47 47 H 1.09002 * 109.46781 * 57.98481 * 24 22 21 48 48 H 1.08998 * 109.47023 * 177.98239 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5336 0.0000 0.0000 3 6 2.0036 1.4679 0.0000 4 6 2.0354 -0.6568 1.2868 5 7 1.8652 -2.1138 1.1872 6 6 2.1987 -2.7705 2.4583 7 6 1.6638 -4.1793 2.4513 8 6 2.5174 -5.2416 2.2577 9 6 2.0280 -6.5385 2.2513 10 6 0.6759 -6.7814 2.4388 11 6 -0.1951 -5.7351 2.6391 12 6 0.2898 -4.4140 2.6432 13 6 -0.5966 -3.3307 2.8431 14 1 -0.3777 -2.3665 2.4084 15 6 -1.7546 -3.5062 3.6089 16 7 -1.8970 -4.5797 4.3431 17 14 -3.0974 -2.2078 3.5831 18 1 -3.6048 -2.0482 2.1966 19 1 -4.2102 -2.6287 4.4717 20 1 -2.5446 -0.9146 4.0598 21 6 2.7031 -2.6269 0.0935 22 6 2.2268 -2.0324 -1.2323 23 6 0.9345 -2.7365 -1.6642 24 6 3.3003 -2.3260 -2.2988 25 8 2.0374 -0.6357 -1.1552 26 1 -0.3634 0.5591 0.8622 27 1 -0.3633 0.4672 -0.9153 28 1 -0.3633 -1.0263 0.0530 29 1 3.0923 1.5009 0.0396 30 1 1.6580 1.9600 -0.9092 31 1 1.5926 1.9810 0.8694 32 1 1.4633 -0.2815 2.1357 33 1 3.0908 -0.4232 1.4289 34 1 1.7504 -2.2157 3.2825 35 1 3.2814 -2.7936 2.5823 36 1 3.5724 -5.0639 2.1102 37 1 2.7050 -7.3658 2.0982 38 1 0.3054 -7.7958 2.4315 39 1 -1.2472 -5.9269 2.7894 40 1 -2.6994 -4.7012 4.8741 41 1 3.7416 -2.3445 0.2686 42 1 2.6249 -3.7139 0.0556 43 1 0.6308 -2.3694 -2.6446 44 1 1.1065 -3.8116 -1.7162 45 1 0.1478 -2.5291 -0.9388 46 1 4.2346 -1.8403 -2.0172 47 1 3.4572 -3.4024 -2.3695 48 1 2.9682 -1.9431 -3.2637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235526381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:40 Heat of formation + Delta-G solvation = -42.208660 kcal Electronic energy + Delta-G solvation = -26881.064610 eV Core-core repulsion = 23513.685298 eV Total energy + Delta-G solvation = -3367.379311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22147 -39.44894 -36.70896 -36.09877 -35.39762 -32.77248 -31.71092 -31.21663 -28.51318 -27.75256 -27.65685 -27.46155 -26.57245 -23.54667 -22.78027 -22.60873 -21.13996 -19.32814 -18.95459 -17.56378 -17.13382 -16.86399 -16.35614 -15.94892 -15.75706 -15.71651 -15.21924 -15.13844 -14.80444 -14.34904 -14.31352 -13.75026 -13.55600 -13.38629 -13.33639 -13.13661 -13.02711 -12.91672 -12.83933 -12.79018 -12.70808 -12.68878 -12.51791 -12.46860 -12.35825 -12.08885 -11.70777 -11.50591 -11.33044 -11.14452 -10.98785 -10.84093 -10.36586 -9.23474 -9.13793 -9.01753 -8.51308 -6.19880 1.03433 1.15697 1.38675 1.47744 1.55918 2.24414 2.50714 2.84072 3.12086 3.79776 3.87766 3.96285 3.97648 4.02609 4.12992 4.27904 4.37720 4.42552 4.52312 4.56849 4.67545 4.70164 4.72347 4.76628 4.78330 4.82142 4.84303 4.89784 4.97876 4.99366 5.03636 5.04478 5.12838 5.18198 5.26219 5.29620 5.32415 5.42987 5.45688 5.57773 5.59505 5.83379 6.02894 6.16529 6.25280 6.28214 6.33714 6.52311 6.84297 6.85966 7.11532 7.18494 8.45681 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.006766 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.159436 B = 4137.279888 C = 5575.596091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 C -0.134 4.134 4 C 0.025 3.975 5 N -0.521 5.521 6 C 0.133 3.867 7 C -0.188 4.188 8 C -0.094 4.094 9 C -0.240 4.240 10 C -0.117 4.117 11 C -0.188 4.188 12 C 0.105 3.895 13 C -0.465 4.465 14 H 0.088 0.912 15 C 0.033 3.967 16 N -0.838 5.838 17 Si 0.964 3.036 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.258 1.258 21 C 0.034 3.966 22 C 0.135 3.865 23 C -0.158 4.158 24 C -0.135 4.135 25 O -0.386 6.386 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.281 0.719 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 8.747 -8.336 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.094 3.906 3 C -0.192 4.192 4 C -0.103 4.103 5 N -0.244 5.244 6 C 0.007 3.993 7 C -0.190 4.190 8 C -0.112 4.112 9 C -0.259 4.259 10 C -0.135 4.135 11 C -0.208 4.208 12 C 0.103 3.897 13 C -0.496 4.496 14 H 0.106 0.894 15 C -0.180 4.180 16 N -0.465 5.465 17 Si 0.787 3.213 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.182 1.182 21 C -0.094 4.094 22 C 0.095 3.905 23 C -0.215 4.215 24 C -0.192 4.192 25 O -0.306 6.306 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.288 8.651 -8.395 13.596 hybrid contribution -0.291 -0.163 0.934 0.992 sum 5.997 8.488 -7.461 12.794 Atomic orbital electron populations 1.22400 0.95777 1.02045 1.01885 1.21384 0.93012 0.92708 0.83537 1.22077 1.01752 0.92060 1.03272 1.22925 0.99566 0.88744 0.99114 1.62520 1.54016 1.03260 1.04637 1.20506 0.95750 0.92338 0.90713 1.19805 0.93142 0.93827 1.12248 1.20698 0.97863 0.92732 0.99927 1.20655 0.94996 0.96337 1.13934 1.20918 0.94396 0.97551 1.00669 1.21299 0.98517 0.93654 1.07324 1.17667 0.91566 0.92663 0.87818 1.19802 1.03946 0.98215 1.27597 0.89351 1.26655 1.00428 0.97858 0.93080 1.69889 1.27526 1.28098 1.21017 0.85508 0.77585 0.79242 0.78981 1.18948 1.20051 1.18174 1.22795 0.94167 1.00709 0.91764 1.21340 0.95164 0.80022 0.93947 1.22335 0.98173 1.00002 1.01034 1.22076 0.97099 1.02233 0.97808 1.86364 1.84484 1.21019 1.38730 0.91521 0.91994 0.93552 0.91966 0.91236 0.89897 0.90146 0.94154 0.92099 0.95145 0.87294 0.87037 0.88084 0.88971 0.90871 0.94556 0.90831 0.91901 0.92435 0.93596 0.91859 0.90338 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 8.46 72.10 0.61 -4.21 16 2 C 0.13 3.70 1.15 -10.31 -0.01 3.69 16 3 C -0.13 -2.83 8.65 72.37 0.63 -2.21 16 4 C 0.02 0.75 4.21 86.26 0.36 1.12 16 5 N -0.52 -18.57 3.97 -900.22 -3.57 -22.14 16 6 C 0.13 5.26 4.29 85.55 0.37 5.62 16 7 C -0.19 -8.62 4.82 -19.40 -0.09 -8.72 16 8 C -0.09 -3.97 8.96 22.22 0.20 -3.77 16 9 C -0.24 -10.35 10.05 22.46 0.23 -10.12 16 10 C -0.12 -5.51 10.02 22.22 0.22 -5.29 16 11 C -0.19 -10.01 8.66 22.73 0.20 -9.81 16 12 C 0.11 5.52 5.53 -21.29 -0.12 5.40 16 13 C -0.47 -24.23 8.15 23.46 0.19 -24.04 16 14 H 0.09 4.48 6.78 -2.91 -0.02 4.46 16 15 C 0.03 1.65 5.21 85.26 0.44 2.09 16 16 N -0.84 -44.59 10.99 21.83 0.24 -44.35 16 17 Si 0.96 39.14 29.58 68.60 2.03 41.17 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 C 0.03 1.10 4.06 86.25 0.35 1.45 16 22 C 0.13 3.93 1.16 -10.31 -0.01 3.91 16 23 C -0.16 -4.95 8.54 72.11 0.62 -4.34 16 24 C -0.13 -3.07 8.64 72.37 0.63 -2.44 16 25 O -0.39 -11.41 8.93 -146.93 -1.31 -12.72 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.65 6.15 -2.39 -0.01 1.64 16 29 H 0.06 1.24 8.13 -2.39 -0.02 1.23 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 2.47 7.86 -2.37 -0.02 2.45 16 33 H 0.04 1.14 7.98 -2.37 -0.02 1.12 16 34 H 0.06 2.55 7.34 -2.39 -0.02 2.54 16 35 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 36 H 0.11 3.98 8.00 -2.91 -0.02 3.96 16 37 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.09 5.21 6.34 -2.91 -0.02 5.20 16 40 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 41 H 0.04 1.10 7.99 -2.37 -0.02 1.08 16 42 H 0.07 2.62 6.71 -2.36 -0.02 2.60 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.80 8.07 -2.39 -0.02 1.78 16 45 H 0.04 1.70 6.13 -2.39 -0.01 1.68 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -57.49 370.22 3.10 -54.39 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.91 Total: 35.31 kcal Atomic # 6 Polarization: -56.46 SS G_CDS: 4.80 Total: -51.66 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -3.33 Total: -66.49 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.31 Total: -12.72 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -57.49 3.10 -54.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.184 kcal (2) G-P(sol) polarization free energy of solvation -57.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds