Wall clock time and date at job start Tue Mar 31 2020 08:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47051 * 2 1 4 4 C 1.38293 * 119.97025 * 270.01689 * 3 2 1 5 5 C 1.38241 * 120.10869 * 179.76551 * 4 3 2 6 6 C 1.38165 * 120.05710 * 0.47087 * 5 4 3 7 7 C 1.50707 * 120.02976 * 179.78722 * 6 5 4 8 8 N 1.46896 * 109.46979 * 254.51065 * 7 6 5 9 9 C 1.46901 * 111.00351 * 72.50591 * 8 7 6 10 10 C 1.50694 * 109.47386 * 195.60121 * 9 8 7 11 11 H 1.07997 * 120.00040 * 5.03554 * 10 9 8 12 12 C 1.37875 * 120.00151 * 185.02601 * 10 9 8 13 13 N 1.31515 * 120.00129 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00101 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47065 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46993 * 120.00327 * 14 12 10 17 17 H 1.48492 * 109.47045 * 240.00032 * 14 12 10 18 18 C 1.46907 * 110.99815 * 196.45709 * 8 7 6 19 19 C 1.54960 * 110.92501 * 312.90164 * 18 8 7 20 20 C 1.54262 * 104.15975 * 156.29081 * 19 18 8 21 21 C 1.53872 * 106.64432 * 336.44809 * 20 19 18 22 22 C 1.54265 * 106.59509 * 359.97263 * 21 20 19 23 23 C 1.38719 * 119.94260 * 359.51174 * 6 5 4 24 24 O 1.35898 * 120.05557 * 180.23189 * 23 6 5 25 25 C 1.38123 * 119.97408 * 89.99956 * 3 2 1 26 26 H 1.08994 * 109.46974 * 300.00079 * 1 2 3 27 27 H 1.09002 * 109.46805 * 60.00182 * 1 2 3 28 28 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47475 * 240.00045 * 2 1 3 30 30 H 1.09002 * 109.46805 * 119.99818 * 2 1 3 31 31 H 1.07998 * 119.94259 * 0.02680 * 4 3 2 32 32 H 1.07997 * 119.97188 * 180.23366 * 5 4 3 33 33 H 1.08995 * 109.46633 * 134.50826 * 7 6 5 34 34 H 1.08998 * 109.46817 * 14.51366 * 7 6 5 35 35 H 1.09005 * 109.46819 * 315.60660 * 9 8 7 36 36 H 1.08999 * 109.46528 * 75.59912 * 9 8 7 37 37 H 0.97001 * 120.00581 * 179.97438 * 13 12 10 38 38 H 1.08999 * 110.67139 * 189.59250 * 18 8 7 39 39 H 1.09005 * 110.47757 * 37.63763 * 19 18 8 40 40 H 1.09000 * 110.52756 * 274.97970 * 19 18 8 41 41 H 1.08996 * 110.03116 * 217.13100 * 20 19 18 42 42 H 1.09008 * 110.02474 * 95.75664 * 20 19 18 43 43 H 1.08999 * 110.03286 * 119.25310 * 21 20 19 44 44 H 1.08997 * 110.02989 * 240.63979 * 21 20 19 45 45 H 1.09003 * 110.48727 * 142.29003 * 22 21 20 46 46 H 1.09000 * 110.48841 * 264.79836 * 22 21 20 47 47 H 0.96703 * 113.99858 * 89.99431 * 24 23 6 48 48 H 1.08002 * 120.02574 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0723 -1.1980 5 6 2.7185 3.3773 -1.2014 6 6 2.9551 4.0307 -0.0072 7 6 3.4569 5.4517 -0.0116 8 7 4.8804 5.4694 0.3507 9 6 5.7089 4.9473 -0.7443 10 6 7.0841 4.6205 -0.2219 11 1 7.2954 4.7070 0.8337 12 6 8.0726 4.2110 -1.0915 13 7 7.8155 4.1061 -2.3770 14 14 9.7771 3.8053 -0.4439 15 1 9.8072 4.0017 1.0277 16 1 10.1035 2.3916 -0.7609 17 1 10.7754 4.6992 -1.0836 18 6 5.3087 6.8206 0.7367 19 6 4.8116 7.8723 -0.2871 20 6 4.7798 9.1914 0.5122 21 6 4.6540 8.8046 1.9962 22 6 4.6129 7.2633 2.0478 23 6 2.7248 3.3796 1.1958 24 8 2.9523 4.0217 2.3717 25 6 2.2624 2.0715 1.1965 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0811 1.5621 -2.1325 32 1 2.8937 3.8852 -2.1382 33 1 2.8907 6.0392 0.7111 34 1 3.3298 5.8788 -1.0063 35 1 5.2500 4.0451 -1.1488 36 1 5.7877 5.6985 -1.5301 37 1 8.5109 3.8184 -2.9889 38 1 6.3928 6.8657 0.8404 39 1 3.8129 7.6170 -0.6417 40 1 5.5062 7.9495 -1.1235 41 1 3.9220 9.7913 0.2086 42 1 5.7019 9.7492 0.3486 43 1 5.5154 9.1739 2.5526 44 1 3.7354 9.2175 2.4130 45 1 5.1627 6.8958 2.9143 46 1 3.5821 6.9098 2.0733 47 1 2.1853 4.5023 2.7122 48 1 2.0827 1.5622 2.1318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236788398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:41 Heat of formation + Delta-G solvation = -33.491914 kcal Electronic energy + Delta-G solvation = -25738.735891 eV Core-core repulsion = 22371.734567 eV Total energy + Delta-G solvation = -3367.001325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.77537 -38.33847 -36.60233 -34.98972 -33.48747 -32.30976 -30.01404 -29.41100 -28.27423 -27.53812 -26.43036 -24.47965 -22.77953 -22.38912 -21.47945 -20.49127 -19.79943 -18.62987 -17.47941 -16.29516 -15.90889 -15.74813 -15.33404 -15.05545 -14.66608 -14.49981 -13.88856 -13.70855 -13.39445 -13.28908 -13.03861 -12.95161 -12.83671 -12.55515 -11.90572 -11.70954 -11.65395 -11.43623 -11.31743 -11.11904 -10.89996 -10.87051 -10.85666 -10.69702 -10.63970 -10.55457 -10.21342 -10.04177 -9.91828 -9.88675 -9.63272 -9.10278 -8.40733 -8.31536 -8.00870 -7.04542 -5.94325 -3.93819 1.65539 1.71364 3.35477 3.42855 3.48892 3.96141 4.50161 4.55693 4.90994 4.92841 5.04187 5.11610 5.14163 5.27424 5.35035 5.38739 5.41107 5.49794 5.55191 5.64700 5.78341 5.80302 5.88809 5.90652 5.96761 5.98386 6.02829 6.07291 6.13194 6.14709 6.19830 6.30031 6.34219 6.36553 6.41774 6.49812 6.63929 6.72604 6.82194 6.87128 6.95518 7.03553 7.21933 7.40331 7.46850 7.92926 8.09708 8.23084 8.33562 8.66422 9.15153 9.69697 11.16302 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.005561 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.273831 B = 5033.706098 C = 6931.493055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.078 4.078 4 C -0.128 4.128 5 C -0.091 4.091 6 C -0.089 4.089 7 C 0.097 3.903 8 N -0.512 5.512 9 C 0.191 3.809 10 C -0.497 4.497 11 H 0.062 0.938 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.095 3.905 19 C -0.160 4.160 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.114 4.114 23 C 0.131 3.869 24 O -0.480 6.480 25 C -0.150 4.150 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.029 0.971 36 H -0.005 1.005 37 H 0.258 0.742 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.375 0.625 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.109 0.941 5.497 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.146 4.146 5 C -0.109 4.109 6 C -0.090 4.090 7 C -0.030 4.030 8 N -0.234 5.234 9 C 0.067 3.933 10 C -0.536 4.536 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.015 4.015 19 C -0.200 4.200 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.152 4.152 23 C 0.086 3.914 24 O -0.287 6.287 25 C -0.169 4.169 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.013 0.987 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.229 0.771 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.374 0.335 5.684 15.460 hybrid contribution 0.591 0.455 -0.541 0.921 sum -13.783 0.790 5.143 14.733 Atomic orbital electron populations 1.21737 0.95062 1.01295 1.02067 1.20502 0.95798 0.92977 1.02739 1.19602 0.99607 0.95808 0.92770 1.20903 1.01544 0.94913 0.97256 1.20965 0.97859 0.94634 0.97476 1.20219 0.99029 0.97359 0.92389 1.20857 0.92310 0.91313 0.98554 1.62163 0.99817 1.19997 1.41436 1.19758 0.91914 0.94500 0.87171 1.21210 0.94619 1.43547 0.94254 0.91950 1.24954 0.98820 0.96025 0.94799 1.69967 1.33463 1.48477 1.02194 0.86520 0.84383 0.77883 0.79145 1.19660 1.21147 1.21229 1.22615 1.00291 0.86434 0.92126 1.23077 1.01260 0.95996 0.99633 1.22026 1.00816 0.97579 0.95277 1.22124 1.00772 0.96917 0.96381 1.22394 1.00759 0.93390 0.98644 1.18154 0.97348 0.90870 0.85017 1.84976 1.39028 1.68964 1.35773 1.21161 1.02705 0.95166 0.97868 0.92725 0.92608 0.92725 0.91097 0.91248 0.86446 0.86071 0.91206 0.95073 0.95323 0.98714 0.93204 0.88692 0.91990 0.91720 0.92836 0.92309 0.92292 0.92682 0.91760 0.91851 0.77140 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.08 -0.94 6.06 -27.88 -0.17 -1.11 16 3 C -0.08 -1.12 5.13 -104.64 -0.54 -1.66 16 4 C -0.13 -1.97 9.70 -39.56 -0.38 -2.35 16 5 C -0.09 -1.56 8.81 -39.61 -0.35 -1.91 16 6 C -0.09 -1.59 4.72 -104.47 -0.49 -2.08 16 7 C 0.10 1.76 3.30 -4.97 -0.02 1.75 16 8 N -0.51 -11.00 4.39 -227.08 -1.00 -11.99 16 9 C 0.19 5.01 4.50 -4.98 -0.02 4.99 16 10 C -0.50 -14.31 8.37 -34.44 -0.29 -14.59 16 11 H 0.06 1.82 7.77 -52.49 -0.41 1.41 16 12 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 14 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 C 0.09 1.83 2.80 -65.68 -0.18 1.64 16 19 C -0.16 -2.75 5.56 -25.04 -0.14 -2.89 16 20 C -0.12 -1.67 6.80 -25.62 -0.17 -1.85 16 21 C -0.12 -1.66 6.80 -25.61 -0.17 -1.83 16 22 C -0.11 -1.79 6.33 -25.07 -0.16 -1.95 16 23 C 0.13 2.21 6.68 -39.22 -0.26 1.94 16 24 O -0.48 -7.52 12.84 -19.42 -0.25 -7.77 16 25 C -0.15 -2.29 9.64 -39.44 -0.38 -2.67 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.12 2.03 8.00 -52.49 -0.42 1.61 16 33 H 0.07 1.12 5.82 -51.93 -0.30 0.81 16 34 H 0.03 0.57 6.65 -51.93 -0.35 0.23 16 35 H 0.03 0.81 6.53 -51.93 -0.34 0.47 16 36 H 0.00 -0.14 7.38 -51.93 -0.38 -0.52 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 2.10 7.25 -51.93 -0.38 1.72 16 39 H 0.06 1.03 5.79 -51.93 -0.30 0.72 16 40 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.95 6.10 -51.93 -0.32 0.63 16 47 H 0.37 3.86 9.06 45.56 0.41 4.28 16 48 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -32.02 375.93 -10.72 -42.73 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.39 Total: 4.58 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -3.46 Total: -24.07 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.26 Total: -38.42 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.25 Total: -7.77 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.02 -10.72 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236788398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.243 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds