Wall clock time and date at job start Tue Mar 31 2020 08:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47051 * 2 1 4 4 C 1.38293 * 119.97025 * 270.01689 * 3 2 1 5 5 C 1.38241 * 120.10869 * 179.76551 * 4 3 2 6 6 C 1.38165 * 120.05710 * 0.47087 * 5 4 3 7 7 C 1.50707 * 120.02976 * 179.78722 * 6 5 4 8 8 N 1.46896 * 109.46979 * 254.51065 * 7 6 5 9 9 C 1.46901 * 111.00351 * 72.50591 * 8 7 6 10 10 C 1.50694 * 109.47386 * 195.60121 * 9 8 7 11 11 H 1.07997 * 120.00040 * 5.03554 * 10 9 8 12 12 C 1.37875 * 120.00151 * 185.02601 * 10 9 8 13 13 N 1.31515 * 120.00129 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00101 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47065 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46993 * 120.00327 * 14 12 10 17 17 H 1.48492 * 109.47045 * 240.00032 * 14 12 10 18 18 C 1.46907 * 110.99815 * 196.45709 * 8 7 6 19 19 C 1.54960 * 110.92501 * 312.90164 * 18 8 7 20 20 C 1.54262 * 104.15975 * 156.29081 * 19 18 8 21 21 C 1.53872 * 106.64432 * 336.44809 * 20 19 18 22 22 C 1.54265 * 106.59509 * 359.97263 * 21 20 19 23 23 C 1.38719 * 119.94260 * 359.51174 * 6 5 4 24 24 O 1.35898 * 120.05557 * 180.23189 * 23 6 5 25 25 C 1.38123 * 119.97408 * 89.99956 * 3 2 1 26 26 H 1.08994 * 109.46974 * 300.00079 * 1 2 3 27 27 H 1.09002 * 109.46805 * 60.00182 * 1 2 3 28 28 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47475 * 240.00045 * 2 1 3 30 30 H 1.09002 * 109.46805 * 119.99818 * 2 1 3 31 31 H 1.07998 * 119.94259 * 0.02680 * 4 3 2 32 32 H 1.07997 * 119.97188 * 180.23366 * 5 4 3 33 33 H 1.08995 * 109.46633 * 134.50826 * 7 6 5 34 34 H 1.08998 * 109.46817 * 14.51366 * 7 6 5 35 35 H 1.09005 * 109.46819 * 315.60660 * 9 8 7 36 36 H 1.08999 * 109.46528 * 75.59912 * 9 8 7 37 37 H 0.97001 * 120.00581 * 179.97438 * 13 12 10 38 38 H 1.08999 * 110.67139 * 189.59250 * 18 8 7 39 39 H 1.09005 * 110.47757 * 37.63763 * 19 18 8 40 40 H 1.09000 * 110.52756 * 274.97970 * 19 18 8 41 41 H 1.08996 * 110.03116 * 217.13100 * 20 19 18 42 42 H 1.09008 * 110.02474 * 95.75664 * 20 19 18 43 43 H 1.08999 * 110.03286 * 119.25310 * 21 20 19 44 44 H 1.08997 * 110.02989 * 240.63979 * 21 20 19 45 45 H 1.09003 * 110.48727 * 142.29003 * 22 21 20 46 46 H 1.09000 * 110.48841 * 264.79836 * 22 21 20 47 47 H 0.96703 * 113.99858 * 89.99431 * 24 23 6 48 48 H 1.08002 * 120.02574 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0723 -1.1980 5 6 2.7185 3.3773 -1.2014 6 6 2.9551 4.0307 -0.0072 7 6 3.4569 5.4517 -0.0116 8 7 4.8804 5.4694 0.3507 9 6 5.7089 4.9473 -0.7443 10 6 7.0841 4.6205 -0.2219 11 1 7.2954 4.7070 0.8337 12 6 8.0726 4.2110 -1.0915 13 7 7.8155 4.1061 -2.3770 14 14 9.7771 3.8053 -0.4439 15 1 9.8072 4.0017 1.0277 16 1 10.1035 2.3916 -0.7609 17 1 10.7754 4.6992 -1.0836 18 6 5.3087 6.8206 0.7367 19 6 4.8116 7.8723 -0.2871 20 6 4.7798 9.1914 0.5122 21 6 4.6540 8.8046 1.9962 22 6 4.6129 7.2633 2.0478 23 6 2.7248 3.3796 1.1958 24 8 2.9523 4.0217 2.3717 25 6 2.2624 2.0715 1.1965 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0811 1.5621 -2.1325 32 1 2.8937 3.8852 -2.1382 33 1 2.8907 6.0392 0.7111 34 1 3.3298 5.8788 -1.0063 35 1 5.2500 4.0451 -1.1488 36 1 5.7877 5.6985 -1.5301 37 1 8.5109 3.8184 -2.9889 38 1 6.3928 6.8657 0.8404 39 1 3.8129 7.6170 -0.6417 40 1 5.5062 7.9495 -1.1235 41 1 3.9220 9.7913 0.2086 42 1 5.7019 9.7492 0.3486 43 1 5.5154 9.1739 2.5526 44 1 3.7354 9.2175 2.4130 45 1 5.1627 6.8958 2.9143 46 1 3.5821 6.9098 2.0733 47 1 2.1853 4.5023 2.7122 48 1 2.0827 1.5622 2.1318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236788398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:40 Heat of formation + Delta-G solvation = -53.040930 kcal Electronic energy + Delta-G solvation = -25739.583600 eV Core-core repulsion = 22371.734567 eV Total energy + Delta-G solvation = -3367.849034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07049 -39.74800 -37.77520 -36.44155 -34.97981 -34.12546 -31.23233 -30.71146 -29.63095 -29.31610 -27.77109 -26.10506 -24.11800 -23.68533 -23.11313 -21.69219 -20.99753 -20.16466 -18.71208 -18.37648 -17.41768 -17.01861 -16.68366 -16.45280 -16.35170 -15.89669 -15.21212 -14.79935 -14.75627 -14.51439 -14.49451 -14.30316 -14.19799 -13.80962 -13.67183 -13.40499 -12.89571 -12.80850 -12.62482 -12.57277 -12.42540 -12.31971 -12.16638 -12.10237 -11.97647 -11.81171 -11.74442 -11.68053 -11.39107 -11.26076 -11.09894 -11.03709 -10.59132 -9.62849 -9.26266 -8.79751 -8.18346 -6.27198 0.41536 0.46378 1.35821 1.36751 1.50486 2.39025 2.72353 3.12996 3.39496 3.43479 3.81882 3.85782 3.89687 3.96263 4.09436 4.14238 4.29251 4.35497 4.47400 4.55074 4.57929 4.60200 4.62103 4.73102 4.74371 4.78991 4.81579 4.89306 4.99481 5.01917 5.11687 5.12909 5.17777 5.20477 5.22613 5.24711 5.31511 5.41850 5.43018 5.45798 5.52570 5.60270 5.66738 5.70594 5.73456 6.04352 6.14204 6.49428 6.73859 6.90651 7.05879 7.41718 8.91645 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.005561 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.273831 B = 5033.706098 C = 6931.493055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.073 4.073 4 C -0.138 4.138 5 C -0.109 4.109 6 C -0.118 4.118 7 C 0.105 3.895 8 N -0.518 5.518 9 C 0.214 3.786 10 C -0.515 4.515 11 H 0.052 0.948 12 C 0.004 3.996 13 N -0.933 5.933 14 Si 0.961 3.039 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.276 1.276 18 C 0.084 3.916 19 C -0.156 4.156 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.103 4.103 23 C 0.127 3.873 24 O -0.493 6.493 25 C -0.157 4.157 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.021 0.979 35 H 0.002 0.998 36 H -0.037 1.037 37 H 0.262 0.738 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.398 0.602 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 0.768 7.380 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 C -0.073 4.073 4 C -0.156 4.156 5 C -0.128 4.128 6 C -0.119 4.119 7 C -0.022 4.022 8 N -0.240 5.240 9 C 0.088 3.912 10 C -0.553 4.553 11 H 0.071 0.929 12 C -0.194 4.194 13 N -0.575 5.575 14 Si 0.786 3.214 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.202 1.202 18 C -0.025 4.025 19 C -0.195 4.195 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.141 4.141 23 C 0.082 3.918 24 O -0.304 6.304 25 C -0.175 4.175 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.153 0.847 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.039 0.961 35 H 0.020 0.980 36 H -0.019 1.019 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.256 0.744 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.551 0.186 7.587 17.304 hybrid contribution 0.902 0.481 -1.135 1.528 sum -14.649 0.667 6.452 16.020 Atomic orbital electron populations 1.21702 0.93332 1.02564 1.02074 1.20586 0.97198 0.90735 1.03454 1.20007 0.98002 0.97222 0.92055 1.21154 1.01400 0.94303 0.98702 1.21060 0.98848 0.95762 0.97110 1.20292 1.00843 0.97490 0.93292 1.20846 0.90320 0.92452 0.98625 1.62076 1.01136 1.21596 1.39214 1.19288 0.91757 0.92560 0.87621 1.21463 0.96182 1.43821 0.93841 0.92950 1.25814 1.02944 0.95673 0.94969 1.70087 1.34897 1.49078 1.03397 0.85461 0.79364 0.77903 0.78699 1.19122 1.20406 1.20176 1.22655 0.98692 0.86079 0.95087 1.22989 1.00463 0.97529 0.98561 1.22009 1.02041 0.95737 0.95283 1.22099 1.02693 0.94701 0.95835 1.22313 1.00645 0.95355 0.95798 1.18276 0.97128 0.91568 0.84865 1.84901 1.40915 1.69354 1.35217 1.21431 1.02358 0.94658 0.99071 0.92552 0.92811 0.90834 0.90585 0.90366 0.84725 0.87137 0.88699 0.96066 0.97994 1.01942 0.92885 0.92491 0.91392 0.94849 0.90376 0.92241 0.91580 0.89679 0.92386 0.90583 0.74439 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 71.98 0.71 -1.55 16 2 C -0.08 -1.69 6.06 29.85 0.18 -1.51 16 3 C -0.07 -2.02 5.13 -19.88 -0.10 -2.12 16 4 C -0.14 -4.24 9.70 22.28 0.22 -4.03 16 5 C -0.11 -3.91 8.81 22.25 0.20 -3.72 16 6 C -0.12 -4.32 4.72 -19.76 -0.09 -4.42 16 7 C 0.10 3.89 3.30 85.56 0.28 4.18 16 8 N -0.52 -23.16 4.39 -872.36 -3.83 -26.99 16 9 C 0.21 11.90 4.50 85.55 0.39 12.29 16 10 C -0.51 -30.88 8.37 25.60 0.21 -30.66 16 11 H 0.05 3.18 7.77 -2.91 -0.02 3.15 16 12 C 0.00 0.21 5.46 84.65 0.46 0.67 16 13 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 14 Si 0.96 46.60 29.54 68.60 2.03 48.62 16 15 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 C 0.08 3.33 2.80 46.23 0.13 3.46 16 19 C -0.16 -5.48 5.56 31.69 0.18 -5.31 16 20 C -0.11 -2.98 6.80 31.32 0.21 -2.76 16 21 C -0.12 -2.77 6.80 31.32 0.21 -2.55 16 22 C -0.10 -3.12 6.33 31.67 0.20 -2.92 16 23 C 0.13 4.21 6.68 22.51 0.15 4.36 16 24 O -0.49 -14.84 12.84 -92.40 -1.19 -16.03 16 25 C -0.16 -4.58 9.64 22.36 0.22 -4.37 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 31 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.11 4.03 8.00 -2.91 -0.02 4.01 16 33 H 0.10 2.96 5.82 -2.39 -0.01 2.95 16 34 H 0.02 0.82 6.65 -2.39 -0.02 0.81 16 35 H 0.00 0.12 6.53 -2.38 -0.02 0.10 16 36 H -0.04 -2.25 7.38 -2.39 -0.02 -2.27 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.06 2.66 7.25 -2.39 -0.02 2.65 16 39 H 0.07 2.28 5.79 -2.38 -0.01 2.26 16 40 H 0.03 1.34 7.93 -2.39 -0.02 1.32 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.08 2.09 6.10 -2.39 -0.01 2.08 16 47 H 0.40 7.40 9.06 -74.06 -0.67 6.73 16 48 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -72.05 375.93 1.31 -70.73 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.26 Total: 22.49 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 3.75 Total: -40.95 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.54 Total: -84.87 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.19 Total: -16.03 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.05 1.31 -70.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236788398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.694 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds