Wall clock time and date at job start Tue Mar 31 2020 08:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 C 1.50699 * 109.47288 * 120.00301 * 2 1 3 5 5 C 1.38288 * 119.97303 * 299.97862 * 4 2 1 6 6 C 1.38240 * 120.11307 * 179.72352 * 5 4 2 7 7 C 1.38169 * 120.05333 * 0.55656 * 6 5 4 8 8 C 1.50697 * 120.02880 * 179.74434 * 7 6 5 9 9 N 1.46902 * 109.47604 * 259.72266 * 8 7 6 10 10 C 1.46846 * 110.99617 * 294.20982 * 9 8 7 11 11 C 1.53040 * 109.51964 * 174.15808 * 10 9 8 12 12 C 1.53119 * 109.28089 * 59.17912 * 11 10 9 13 13 C 1.53124 * 109.15841 * 302.34776 * 12 11 10 14 14 H 1.09000 * 109.53108 * 297.68809 * 13 12 11 15 15 C 1.50693 * 109.50241 * 177.59421 * 13 12 11 16 16 H 1.07996 * 120.00476 * 240.19349 * 15 13 12 17 17 C 1.37879 * 119.99955 * 60.19409 * 15 13 12 18 18 N 1.31513 * 120.00126 * 359.97438 * 17 15 13 19 19 Si 1.86809 * 120.00078 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46982 * 89.99935 * 19 17 15 21 21 H 1.48500 * 109.46811 * 210.00128 * 19 17 15 22 22 H 1.48502 * 109.46845 * 329.99882 * 19 17 15 23 23 C 1.46846 * 111.00204 * 169.99877 * 9 8 7 24 24 C 1.38708 * 119.94221 * 359.46885 * 7 6 5 25 25 O 1.35904 * 120.05345 * 180.23692 * 24 7 6 26 26 C 1.38124 * 119.97258 * 120.00240 * 4 2 1 27 27 H 1.08997 * 109.47090 * 299.99159 * 1 2 3 28 28 H 1.08997 * 109.47454 * 59.99855 * 1 2 3 29 29 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47371 * 240.00732 * 2 1 3 31 31 H 1.09005 * 109.46458 * 60.00173 * 3 2 1 32 32 H 1.08996 * 109.47196 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47133 * 300.00342 * 3 2 1 34 34 H 1.08000 * 119.93865 * 0.02562 * 5 4 2 35 35 H 1.07995 * 119.97652 * 180.27420 * 6 5 4 36 36 H 1.08997 * 109.47156 * 139.71795 * 8 7 6 37 37 H 1.09007 * 109.47324 * 19.72559 * 8 7 6 38 38 H 1.08996 * 109.46231 * 294.17554 * 10 9 8 39 39 H 1.09004 * 109.46418 * 54.14394 * 10 9 8 40 40 H 1.09004 * 109.50602 * 299.23671 * 11 10 9 41 41 H 1.08998 * 109.50366 * 179.12192 * 11 10 9 42 42 H 1.08998 * 109.52394 * 182.44064 * 12 11 10 43 43 H 1.08999 * 109.51878 * 62.24548 * 12 11 10 44 44 H 0.97003 * 119.99788 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.45990 * 305.85570 * 23 9 8 46 46 H 1.08997 * 109.46419 * 65.82250 * 23 9 8 47 47 H 0.96700 * 114.00177 * 89.99877 * 25 24 7 48 48 H 1.08005 * 120.02488 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6983 -0.2373 2.4862 6 6 2.1528 -0.8901 3.6168 7 6 2.9518 -2.0107 3.4946 8 6 3.4518 -2.7185 4.7275 9 7 4.8417 -2.3221 4.9902 10 6 5.7340 -2.7944 3.9238 11 6 7.1425 -2.2418 4.1536 12 6 7.6538 -2.7121 5.5181 13 6 6.6811 -2.2487 6.6062 14 1 6.6454 -1.1594 6.6232 15 6 7.1456 -2.7578 7.9463 16 1 6.5096 -3.4103 8.5261 17 6 8.3825 -2.3906 8.4323 18 7 9.1572 -1.5965 7.7261 19 14 8.9586 -3.0224 10.0932 20 1 9.6867 -4.3036 9.9101 21 1 9.8637 -2.0232 10.7159 22 1 7.7833 -3.2423 10.9739 23 6 5.2860 -2.8010 6.3053 24 6 3.2887 -2.4870 2.2362 25 8 4.0705 -3.5918 2.1134 26 6 2.8265 -1.8334 1.1029 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.6766 1.9563 0.8901 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.0773 0.6408 2.5837 35 1 1.8870 -0.5213 4.5964 36 1 3.4045 -3.7963 4.5720 37 1 2.8292 -2.4469 5.5801 38 1 5.7653 -3.8838 3.9324 39 1 5.3615 -2.4495 2.9592 40 1 7.1143 -1.1524 4.1313 41 1 7.8082 -2.6051 3.3706 42 1 8.6393 -2.2854 5.7047 43 1 7.7191 -3.8001 5.5274 44 1 10.0276 -1.3385 8.0678 45 1 4.5880 -2.4610 7.0704 46 1 5.3195 -3.8905 6.3028 47 1 3.5757 -4.4219 2.0780 48 1 3.0877 -2.2020 0.1219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237049446.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:08 Heat of formation + Delta-G solvation = -34.168194 kcal Electronic energy + Delta-G solvation = -25305.021685 eV Core-core repulsion = 21937.991034 eV Total energy + Delta-G solvation = -3367.030651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28424 -38.06140 -37.17621 -35.16289 -33.60952 -31.89352 -30.37347 -29.84294 -29.17923 -27.36122 -25.70116 -24.85677 -22.87709 -22.64708 -21.61547 -20.83854 -20.17699 -18.48240 -17.72870 -16.52835 -16.17667 -15.92796 -15.39626 -14.90891 -14.41287 -14.23917 -14.05486 -13.85901 -13.67125 -13.56521 -13.11793 -12.90614 -12.54626 -12.49393 -12.27247 -12.04647 -11.91215 -11.68112 -11.54568 -11.46920 -11.23817 -11.04048 -10.90292 -10.89107 -10.64018 -10.52524 -10.25646 -9.90586 -9.69399 -9.38167 -8.98797 -8.71656 -8.61528 -8.41645 -8.23468 -7.50935 -5.91738 -3.97983 1.27272 1.37103 3.33792 3.40369 3.43287 3.59890 4.16711 4.46619 4.55402 4.64529 4.81056 4.95562 4.98165 5.02596 5.17381 5.27526 5.38039 5.39370 5.41227 5.59649 5.61923 5.70495 5.73432 5.79250 5.90503 5.99885 6.03130 6.03465 6.07507 6.10953 6.26997 6.41606 6.47754 6.50679 6.57203 6.65222 6.69400 6.85808 6.87146 6.94660 7.07116 7.33367 7.50586 7.69953 7.80285 7.82507 7.94280 8.16505 8.25597 8.55015 9.06312 9.65826 11.14121 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.002991 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.349039 B = 9360.340022 C = 9411.363835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.070 4.070 5 C -0.125 4.125 6 C -0.086 4.086 7 C -0.094 4.094 8 C 0.097 3.903 9 N -0.532 5.532 10 C 0.067 3.933 11 C -0.119 4.119 12 C -0.109 4.109 13 C 0.056 3.944 14 H 0.033 0.967 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.068 3.932 24 C 0.113 3.887 25 O -0.487 6.487 26 C -0.146 4.146 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.259 0.741 45 H 0.056 0.944 46 H 0.017 0.983 47 H 0.378 0.622 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 0.941 -15.668 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.070 4.070 5 C -0.143 4.143 6 C -0.105 4.105 7 C -0.095 4.095 8 C -0.030 4.030 9 N -0.257 5.257 10 C -0.060 4.060 11 C -0.157 4.157 12 C -0.147 4.147 13 C 0.037 3.963 14 H 0.051 0.949 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.058 4.058 24 C 0.068 3.932 25 O -0.298 6.298 26 C -0.164 4.164 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.234 0.766 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.237 1.937 -15.627 22.618 hybrid contribution 0.089 -1.641 0.905 1.876 sum -16.148 0.296 -14.722 21.854 Atomic orbital electron populations 1.21853 0.94405 1.01903 1.01876 1.20108 0.95824 0.96129 0.95315 1.21863 1.01537 0.94977 1.01831 1.19639 0.97436 0.95207 0.94706 1.20918 1.01353 1.00206 0.91777 1.20942 0.96658 0.94133 0.98773 1.20225 0.97395 0.97463 0.94372 1.20873 0.91949 0.96056 0.94164 1.62058 0.99684 1.60243 1.03666 1.22200 0.93151 0.96451 0.94224 1.21704 0.94406 1.00584 0.98978 1.21640 1.03021 0.98123 0.91963 1.18647 0.87623 0.96749 0.93260 0.94860 1.21156 1.01631 1.29559 1.02908 0.92913 1.24940 0.96760 0.95040 0.97142 1.69905 1.10266 1.35101 1.37408 0.86639 0.78611 0.78527 0.84451 1.20821 1.21273 1.20004 1.22313 0.99826 0.96268 0.87432 1.18225 0.93044 0.90271 0.91624 1.85107 1.33727 1.15212 1.95720 1.21226 0.99477 0.97536 0.98178 0.92361 0.92513 0.92632 0.90658 0.92328 0.92341 0.92519 0.86172 0.85607 0.94873 0.90603 0.96071 0.90358 0.92530 0.93828 0.89328 0.95318 0.93112 0.92504 0.96463 0.76626 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.01 37.16 0.33 -0.69 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -1.18 9.01 37.16 0.33 -0.85 16 4 C -0.07 -0.75 4.78 -104.65 -0.50 -1.25 16 5 C -0.12 -1.39 8.71 -39.56 -0.34 -1.74 16 6 C -0.09 -1.10 9.67 -39.61 -0.38 -1.49 16 7 C -0.09 -1.33 5.17 -104.47 -0.54 -1.87 16 8 C 0.10 1.54 4.99 -4.98 -0.02 1.51 16 9 N -0.53 -10.41 4.65 -236.12 -1.10 -11.51 16 10 C 0.07 1.30 4.05 -3.83 -0.02 1.29 16 11 C -0.12 -2.56 6.09 -26.65 -0.16 -2.72 16 12 C -0.11 -2.73 5.03 -26.61 -0.13 -2.86 16 13 C 0.06 1.45 2.26 -91.69 -0.21 1.25 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.51 -14.41 8.56 -34.44 -0.29 -14.70 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 18 N -0.89 -25.94 11.36 55.43 0.63 -25.31 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.07 1.51 4.68 -3.84 -0.02 1.49 16 24 C 0.11 1.50 5.42 -39.22 -0.21 1.29 16 25 O -0.49 -6.19 9.64 -19.44 -0.19 -6.38 16 26 C -0.15 -1.72 9.61 -39.43 -0.38 -2.10 16 27 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 31 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.12 1.11 7.09 -52.49 -0.37 0.74 16 35 H 0.13 1.48 8.03 -52.49 -0.42 1.06 16 36 H 0.03 0.50 7.84 -51.93 -0.41 0.10 16 37 H 0.08 1.13 7.85 -51.93 -0.41 0.72 16 38 H 0.02 0.42 7.98 -51.93 -0.41 0.00 16 39 H 0.08 1.47 4.44 -51.93 -0.23 1.24 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.38 3.12 9.06 45.56 0.41 3.53 16 48 H 0.12 1.27 7.94 -52.48 -0.42 0.85 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -30.67 368.34 -10.57 -41.24 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.52 Total: 2.34 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -2.93 Total: -22.52 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.47 Total: -36.82 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.19 Total: -6.38 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.67 -10.57 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237049446.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.072 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds