Wall clock time and date at job start Tue Mar 31 2020 08:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 C 1.50699 * 109.47288 * 120.00301 * 2 1 3 5 5 C 1.38288 * 119.97303 * 299.97862 * 4 2 1 6 6 C 1.38240 * 120.11307 * 179.72352 * 5 4 2 7 7 C 1.38169 * 120.05333 * 0.55656 * 6 5 4 8 8 C 1.50697 * 120.02880 * 179.74434 * 7 6 5 9 9 N 1.46902 * 109.47604 * 259.72266 * 8 7 6 10 10 C 1.46846 * 110.99617 * 294.20982 * 9 8 7 11 11 C 1.53040 * 109.51964 * 174.15808 * 10 9 8 12 12 C 1.53119 * 109.28089 * 59.17912 * 11 10 9 13 13 C 1.53124 * 109.15841 * 302.34776 * 12 11 10 14 14 H 1.09000 * 109.53108 * 297.68809 * 13 12 11 15 15 C 1.50693 * 109.50241 * 177.59421 * 13 12 11 16 16 H 1.07996 * 120.00476 * 240.19349 * 15 13 12 17 17 C 1.37879 * 119.99955 * 60.19409 * 15 13 12 18 18 N 1.31513 * 120.00126 * 359.97438 * 17 15 13 19 19 Si 1.86809 * 120.00078 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46982 * 89.99935 * 19 17 15 21 21 H 1.48500 * 109.46811 * 210.00128 * 19 17 15 22 22 H 1.48502 * 109.46845 * 329.99882 * 19 17 15 23 23 C 1.46846 * 111.00204 * 169.99877 * 9 8 7 24 24 C 1.38708 * 119.94221 * 359.46885 * 7 6 5 25 25 O 1.35904 * 120.05345 * 180.23692 * 24 7 6 26 26 C 1.38124 * 119.97258 * 120.00240 * 4 2 1 27 27 H 1.08997 * 109.47090 * 299.99159 * 1 2 3 28 28 H 1.08997 * 109.47454 * 59.99855 * 1 2 3 29 29 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47371 * 240.00732 * 2 1 3 31 31 H 1.09005 * 109.46458 * 60.00173 * 3 2 1 32 32 H 1.08996 * 109.47196 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47133 * 300.00342 * 3 2 1 34 34 H 1.08000 * 119.93865 * 0.02562 * 5 4 2 35 35 H 1.07995 * 119.97652 * 180.27420 * 6 5 4 36 36 H 1.08997 * 109.47156 * 139.71795 * 8 7 6 37 37 H 1.09007 * 109.47324 * 19.72559 * 8 7 6 38 38 H 1.08996 * 109.46231 * 294.17554 * 10 9 8 39 39 H 1.09004 * 109.46418 * 54.14394 * 10 9 8 40 40 H 1.09004 * 109.50602 * 299.23671 * 11 10 9 41 41 H 1.08998 * 109.50366 * 179.12192 * 11 10 9 42 42 H 1.08998 * 109.52394 * 182.44064 * 12 11 10 43 43 H 1.08999 * 109.51878 * 62.24548 * 12 11 10 44 44 H 0.97003 * 119.99788 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.45990 * 305.85570 * 23 9 8 46 46 H 1.08997 * 109.46419 * 65.82250 * 23 9 8 47 47 H 0.96700 * 114.00177 * 89.99877 * 25 24 7 48 48 H 1.08005 * 120.02488 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6983 -0.2373 2.4862 6 6 2.1528 -0.8901 3.6168 7 6 2.9518 -2.0107 3.4946 8 6 3.4518 -2.7185 4.7275 9 7 4.8417 -2.3221 4.9902 10 6 5.7340 -2.7944 3.9238 11 6 7.1425 -2.2418 4.1536 12 6 7.6538 -2.7121 5.5181 13 6 6.6811 -2.2487 6.6062 14 1 6.6454 -1.1594 6.6232 15 6 7.1456 -2.7578 7.9463 16 1 6.5096 -3.4103 8.5261 17 6 8.3825 -2.3906 8.4323 18 7 9.1572 -1.5965 7.7261 19 14 8.9586 -3.0224 10.0932 20 1 9.6867 -4.3036 9.9101 21 1 9.8637 -2.0232 10.7159 22 1 7.7833 -3.2423 10.9739 23 6 5.2860 -2.8010 6.3053 24 6 3.2887 -2.4870 2.2362 25 8 4.0705 -3.5918 2.1134 26 6 2.8265 -1.8334 1.1029 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.6766 1.9563 0.8901 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.0773 0.6408 2.5837 35 1 1.8870 -0.5213 4.5964 36 1 3.4045 -3.7963 4.5720 37 1 2.8292 -2.4469 5.5801 38 1 5.7653 -3.8838 3.9324 39 1 5.3615 -2.4495 2.9592 40 1 7.1143 -1.1524 4.1313 41 1 7.8082 -2.6051 3.3706 42 1 8.6393 -2.2854 5.7047 43 1 7.7191 -3.8001 5.5274 44 1 10.0276 -1.3385 8.0678 45 1 4.5880 -2.4610 7.0704 46 1 5.3195 -3.8905 6.3028 47 1 3.5757 -4.4219 2.0780 48 1 3.0877 -2.2020 0.1219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237049446.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:07 Heat of formation + Delta-G solvation = -52.023348 kcal Electronic energy + Delta-G solvation = -25305.795942 eV Core-core repulsion = 21937.991034 eV Total energy + Delta-G solvation = -3367.804908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28930 -39.53343 -38.18458 -36.21317 -35.26328 -33.60350 -31.73349 -31.33879 -30.36390 -27.93504 -26.93221 -26.90384 -24.07832 -23.75391 -23.23487 -22.24568 -21.05968 -20.34756 -18.65180 -18.44128 -17.34170 -16.98586 -16.57736 -16.52362 -15.86935 -15.49191 -15.28536 -14.94418 -14.75243 -14.75060 -14.37899 -14.26942 -14.18866 -13.94156 -13.45077 -13.13999 -13.02597 -12.89691 -12.84417 -12.68063 -12.61764 -12.45937 -12.38395 -12.07326 -11.93759 -11.76649 -11.71578 -11.53502 -11.39183 -11.11448 -10.84438 -10.66683 -10.36917 -9.67492 -9.40869 -9.02776 -8.07542 -6.22379 0.33886 0.44621 1.41236 1.41493 1.52225 2.42600 2.65535 3.18993 3.28781 3.34530 3.74656 3.87674 4.00063 4.11821 4.25107 4.29434 4.35539 4.36338 4.42199 4.49623 4.54950 4.62201 4.68324 4.74066 4.81813 4.85642 4.92446 4.96692 5.02137 5.03881 5.08300 5.08541 5.15723 5.21770 5.27784 5.34817 5.38392 5.43257 5.49666 5.53260 5.63483 5.66210 5.72927 5.96381 6.00641 6.12381 6.22207 6.37566 6.47254 6.89312 6.90533 7.45473 8.97288 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.002991 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.349039 B = 9360.340022 C = 9411.363835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.065 4.065 5 C -0.127 4.127 6 C -0.095 4.095 7 C -0.118 4.118 8 C 0.101 3.899 9 N -0.543 5.543 10 C 0.080 3.920 11 C -0.114 4.114 12 C -0.101 4.101 13 C 0.055 3.945 14 H -0.006 1.006 15 C -0.536 4.536 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.082 3.918 24 C 0.108 3.892 25 O -0.501 6.501 26 C -0.153 4.153 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.022 0.978 39 H 0.092 0.908 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.260 0.740 45 H 0.059 0.941 46 H 0.015 0.985 47 H 0.397 0.603 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.506 0.691 -16.757 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.065 4.065 5 C -0.145 4.145 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.026 4.026 9 N -0.268 5.268 10 C -0.047 4.047 11 C -0.152 4.152 12 C -0.139 4.139 13 C 0.036 3.964 14 H 0.012 0.988 15 C -0.574 4.574 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.556 5.556 19 Si 0.782 3.218 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.191 1.191 23 C -0.045 4.045 24 C 0.063 3.937 25 O -0.314 6.314 26 C -0.172 4.172 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.256 0.744 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.866 1.672 -16.726 24.530 hybrid contribution 0.548 -1.526 1.172 2.000 sum -17.318 0.146 -15.554 23.278 Atomic orbital electron populations 1.21834 0.93182 1.02072 1.02678 1.20169 0.96766 0.96016 0.94339 1.21866 1.00693 0.94927 1.02697 1.19979 0.96279 0.94635 0.95597 1.21146 1.01291 1.00600 0.91440 1.21109 0.96586 0.93950 0.99709 1.20154 0.99171 0.98586 0.93941 1.20871 0.89415 0.96809 0.95514 1.61977 1.01759 1.60629 1.02409 1.22073 0.91689 0.96209 0.94777 1.21642 0.96409 0.99732 0.97400 1.21446 1.01333 0.97273 0.93855 1.18562 0.90354 0.94323 0.93191 0.98780 1.21518 1.02070 1.29784 1.04036 0.92865 1.25768 0.96866 0.95180 1.00861 1.70056 1.10519 1.36014 1.39048 0.85579 0.78241 0.78009 0.79950 1.20145 1.20880 1.19127 1.21988 0.97586 0.95709 0.89229 1.18340 0.93018 0.90581 0.91730 1.84996 1.34630 1.16120 1.95691 1.21433 0.99569 0.97794 0.98378 0.92246 0.91086 0.92788 0.89977 0.92320 0.93652 0.90877 0.84251 0.85162 0.94105 0.90021 0.95998 0.88999 0.93907 0.91983 0.92500 0.95954 0.93080 0.92288 0.96701 0.74405 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.01 71.98 0.65 -0.97 16 2 C -0.05 -0.78 3.09 -11.54 -0.04 -0.82 16 3 C -0.14 -2.02 9.01 71.98 0.65 -1.38 16 4 C -0.06 -1.26 4.78 -19.88 -0.10 -1.36 16 5 C -0.13 -2.60 8.71 22.28 0.19 -2.41 16 6 C -0.09 -2.31 9.67 22.25 0.22 -2.10 16 7 C -0.12 -3.20 5.17 -19.77 -0.10 -3.30 16 8 C 0.10 3.09 4.99 85.56 0.43 3.52 16 9 N -0.54 -21.15 4.65 -900.93 -4.19 -25.34 16 10 C 0.08 3.05 4.05 86.33 0.35 3.40 16 11 C -0.11 -4.94 6.09 30.65 0.19 -4.75 16 12 C -0.10 -5.18 5.03 30.68 0.15 -5.03 16 13 C 0.05 2.92 2.26 -11.49 -0.03 2.90 16 14 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 15 C -0.54 -30.67 8.56 25.60 0.22 -30.45 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.01 0.68 5.31 84.66 0.45 1.13 16 18 N -0.92 -55.02 11.36 21.45 0.24 -54.77 16 19 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C 0.08 3.67 4.68 86.32 0.40 4.07 16 24 C 0.11 2.70 5.42 22.50 0.12 2.82 16 25 O -0.50 -11.87 9.64 -92.47 -0.89 -12.77 16 26 C -0.15 -3.32 9.61 22.36 0.21 -3.10 16 27 H 0.06 0.67 7.39 -2.39 -0.02 0.66 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.08 1.09 7.87 -2.38 -0.02 1.07 16 31 H 0.06 0.81 7.39 -2.38 -0.02 0.80 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.14 2.25 7.09 -2.91 -0.02 2.23 16 35 H 0.13 2.94 8.03 -2.91 -0.02 2.92 16 36 H 0.04 1.18 7.84 -2.39 -0.02 1.17 16 37 H 0.08 2.36 7.85 -2.38 -0.02 2.34 16 38 H 0.02 0.84 7.98 -2.39 -0.02 0.82 16 39 H 0.09 3.34 4.44 -2.38 -0.01 3.33 16 40 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 42 H 0.06 3.27 6.16 -2.39 -0.01 3.25 16 43 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 45 H 0.06 2.56 8.02 -2.39 -0.02 2.54 16 46 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.40 5.83 9.06 -74.06 -0.67 5.16 16 48 H 0.14 2.51 7.94 -2.91 -0.02 2.49 16 Total: -1.00 -66.64 368.34 1.42 -65.21 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.26 Total: 18.74 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 3.97 Total: -37.81 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.94 Total: -80.11 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.89 Total: -12.77 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.64 1.42 -65.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237049446.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.187 kcal (2) G-P(sol) polarization free energy of solvation -66.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds