Wall clock time and date at job start Tue Mar 31 2020 07:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47253 * 239.99971 * 2 1 3 5 5 C 1.52996 * 109.47128 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47531 * 59.99799 * 5 4 2 7 7 C 1.53004 * 109.47376 * 300.00368 * 6 5 4 8 8 H 1.08998 * 109.46929 * 300.00088 * 7 6 5 9 9 C 1.52990 * 109.47495 * 179.97438 * 7 6 5 10 10 N 1.46502 * 109.47140 * 64.99629 * 9 7 6 11 11 C 1.39786 * 120.00218 * 180.02562 * 10 9 7 12 12 C 1.38950 * 120.00729 * 180.02562 * 11 10 9 13 13 C 1.38004 * 119.99472 * 180.02562 * 12 11 10 14 14 C 1.38899 * 120.00488 * 359.97438 * 13 12 11 15 15 O 1.35798 * 119.99511 * 179.97438 * 14 13 12 16 16 C 1.34813 * 116.99884 * 5.54665 * 15 14 13 17 17 H 1.07999 * 120.00030 * 354.93687 * 16 15 14 18 18 C 1.38622 * 119.99902 * 174.66996 * 16 15 14 19 19 N 1.31573 * 120.00475 * 0.26764 * 18 16 15 20 20 Si 1.86810 * 119.99581 * 180.27333 * 18 16 15 21 21 H 1.48494 * 109.47303 * 60.00000 * 20 18 16 22 22 H 1.48500 * 109.46738 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46848 * 299.99408 * 20 18 16 24 24 C 1.38903 * 120.01497 * 0.25777 * 14 13 12 25 25 C 1.38010 * 120.00229 * 359.48843 * 24 14 13 26 26 C 1.52999 * 109.46694 * 119.99965 * 2 1 3 27 27 H 1.09002 * 109.47411 * 299.99812 * 1 2 3 28 28 H 1.08998 * 109.46624 * 60.00271 * 1 2 3 29 29 H 1.08998 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47130 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47625 * 299.99712 * 3 2 1 32 32 H 1.09008 * 109.47421 * 60.00261 * 3 2 1 33 33 H 1.09002 * 109.47017 * 300.00276 * 4 2 1 34 34 H 1.09002 * 109.47336 * 59.99816 * 4 2 1 35 35 H 1.09002 * 109.47286 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47113 * 299.99870 * 5 4 2 37 37 H 1.09001 * 109.47651 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.46865 * 59.99919 * 6 5 4 39 39 H 1.09003 * 109.47391 * 305.00284 * 9 7 6 40 40 H 1.08996 * 109.47518 * 184.99891 * 9 7 6 41 41 H 0.97001 * 119.99692 * 0.02562 * 10 9 7 42 42 H 1.08003 * 120.00028 * 359.97438 * 12 11 10 43 43 H 1.08001 * 119.99653 * 179.97438 * 13 12 11 44 44 H 0.97000 * 120.00358 * 180.02562 * 19 18 16 45 45 H 1.07997 * 119.99513 * 179.72175 * 24 14 13 46 46 H 1.08000 * 120.00328 * 180.25366 * 25 24 14 47 47 H 1.08998 * 109.47457 * 60.00373 * 26 2 1 48 48 H 1.09000 * 109.47624 * 299.99765 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0796 -1.4433 0.0003 7 6 3.5696 -0.7221 1.2496 8 1 3.9332 0.3054 1.2498 9 6 4.0785 -1.4440 2.4988 10 7 5.5387 -1.3416 2.5611 11 6 6.2359 -1.9290 3.6208 12 6 7.6207 -1.8315 3.6802 13 6 8.3089 -2.4119 4.7262 14 6 7.6173 -3.0930 5.7197 15 8 8.2947 -3.6645 6.7486 16 6 9.6222 -3.4372 6.8086 17 1 10.1133 -2.8931 6.0154 18 6 10.3559 -3.8970 7.8912 19 7 9.7577 -4.5599 8.8576 20 14 12.1940 -3.5753 7.9780 21 1 12.4411 -2.1110 7.9731 22 1 12.7412 -4.1649 9.2263 23 1 12.8607 -4.1938 6.8041 24 6 6.2334 -3.1948 5.6580 25 6 5.5443 -2.6100 4.6150 26 6 2.0400 -0.7213 1.2493 27 1 -0.3634 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.9334 -1.2352 -2.1391 36 1 3.9338 0.3058 -1.2487 37 1 5.1696 -1.4441 0.0004 38 1 3.7159 -2.4709 0.0001 39 1 3.7896 -2.4941 2.4548 40 1 3.6439 -0.9845 3.3865 41 1 6.0215 -0.8662 1.8670 42 1 8.1585 -1.3022 2.9075 43 1 9.3853 -2.3365 4.7723 44 1 10.2710 -4.8813 9.6153 45 1 5.6964 -3.7283 6.4283 46 1 4.4679 -2.6856 4.5692 47 1 1.6767 -1.7489 1.2493 48 1 1.6767 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253499221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:10 Heat of formation + Delta-G solvation = -30.724862 kcal Electronic energy + Delta-G solvation = -24281.103516 eV Core-core repulsion = 20914.222180 eV Total energy + Delta-G solvation = -3366.881337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.07808 -38.91123 -37.06149 -35.04965 -33.00086 -32.09361 -31.35121 -30.12855 -27.67195 -27.54422 -26.57764 -25.60087 -24.45632 -22.51932 -21.83266 -20.80284 -20.31916 -18.68567 -17.75078 -17.03524 -16.37743 -15.49989 -15.38378 -14.94007 -14.71669 -14.41099 -14.24649 -14.15949 -13.70656 -13.48198 -13.41806 -13.15754 -12.92762 -12.62517 -12.42702 -12.35580 -12.17789 -11.99748 -11.72063 -11.58740 -11.51375 -11.43391 -11.22420 -11.19290 -11.07292 -10.85400 -10.57166 -10.41919 -10.33796 -10.23916 -10.16050 -9.19622 -9.11703 -8.39770 -8.12472 -6.34556 -6.28908 -3.86260 2.24788 2.62568 3.20579 3.21986 3.24301 3.86420 4.08744 4.33923 4.36186 4.43463 4.70473 4.74826 4.89014 5.01303 5.06915 5.08853 5.22279 5.23407 5.30336 5.37330 5.37710 5.45164 5.47457 5.56160 5.63478 5.66021 5.69743 5.72200 5.73211 5.77521 5.81485 5.86196 5.94694 6.00203 6.06366 6.09820 6.13050 6.25986 6.29167 6.32455 6.60267 6.90848 6.95790 7.18564 7.35529 7.49603 7.69070 8.04207 8.15374 8.30439 9.16759 9.91943 10.89675 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.039989 B = 0.002251 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.018117 B =12436.470071 C =12788.566770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.098 4.098 8 H 0.076 0.924 9 C 0.139 3.861 10 N -0.759 5.759 11 C 0.125 3.875 12 C -0.143 4.143 13 C -0.190 4.190 14 C 0.112 3.888 15 O -0.189 6.189 16 C -0.386 4.386 17 H 0.087 0.913 18 C 0.036 3.964 19 N -0.870 5.870 20 Si 0.937 3.063 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.272 1.272 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.100 4.100 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.389 0.611 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.267 0.733 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.558 9.695 -19.487 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.116 4.116 8 H 0.095 0.905 9 C 0.013 3.987 10 N -0.395 5.395 11 C 0.027 3.973 12 C -0.166 4.166 13 C -0.210 4.210 14 C 0.060 3.940 15 O -0.094 6.094 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.167 4.167 19 N -0.506 5.506 20 Si 0.763 3.237 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.197 1.197 24 C -0.170 4.170 25 C -0.168 4.168 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.223 0.777 42 H 0.123 0.877 43 H 0.144 0.856 44 H 0.077 0.923 45 H 0.134 0.866 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.747 9.379 -19.012 26.409 hybrid contribution 1.151 0.374 -0.254 1.236 sum -14.597 9.753 -19.266 26.065 Atomic orbital electron populations 1.21868 0.94708 1.01705 1.01626 1.20514 0.95065 0.95545 0.95285 1.21978 1.01564 0.95256 1.01432 1.21590 0.95637 1.00316 0.96954 1.21589 0.95593 1.00876 0.97881 1.21566 1.00494 0.99330 0.93594 1.21384 0.95665 1.00104 0.94465 0.90524 1.21144 0.81719 0.99254 0.96536 1.44220 1.04477 1.63751 1.27047 1.17405 0.90821 0.98823 0.90237 1.20225 0.91853 1.04647 0.99847 1.20982 1.00347 1.03698 0.95940 1.19238 0.91547 0.93780 0.89453 1.83987 1.21646 1.62824 1.40954 1.21180 0.80479 1.37450 1.07218 0.89548 1.25209 1.00074 0.96720 0.94712 1.70035 1.36295 1.35178 1.09135 0.85844 0.81147 0.78778 0.77979 1.19712 1.20447 1.19700 1.20024 0.91567 1.05271 1.00165 1.20171 0.98161 1.02968 0.95504 1.21555 0.94335 1.00695 0.97244 0.92649 0.92822 0.92700 0.91964 0.93001 0.92785 0.92045 0.92295 0.92220 0.91796 0.91823 0.91903 0.93189 0.93216 0.77742 0.87734 0.85567 0.92286 0.86586 0.87216 0.91715 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.47 37.16 0.31 -0.58 16 2 C -0.06 -0.44 0.77 -154.51 -0.12 -0.56 16 3 C -0.15 -0.99 7.78 37.15 0.29 -0.70 16 4 C -0.11 -0.73 4.73 -26.73 -0.13 -0.86 16 5 C -0.12 -0.88 5.65 -26.74 -0.15 -1.03 16 6 C -0.11 -0.94 5.08 -26.73 -0.14 -1.08 16 7 C -0.10 -0.84 1.95 -90.64 -0.18 -1.02 16 8 H 0.08 0.68 6.43 -51.93 -0.33 0.34 16 9 C 0.14 1.56 4.30 -4.05 -0.02 1.54 16 10 N -0.76 -10.25 5.46 -58.58 -0.32 -10.57 16 11 C 0.13 2.21 6.66 -83.70 -0.56 1.65 16 12 C -0.14 -2.71 9.89 -39.40 -0.39 -3.10 16 13 C -0.19 -4.25 9.16 -39.42 -0.36 -4.61 16 14 C 0.11 2.80 6.65 -39.09 -0.26 2.54 16 15 O -0.19 -5.57 9.76 -0.05 0.00 -5.57 16 16 C -0.39 -11.14 9.48 30.87 0.29 -10.85 16 17 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 18 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 19 N -0.87 -26.30 13.67 55.48 0.76 -25.54 16 20 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.15 -3.29 9.98 -39.42 -0.39 -3.68 16 25 C -0.15 -2.71 9.30 -39.40 -0.37 -3.08 16 26 C -0.10 -0.77 4.01 -26.75 -0.11 -0.88 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 4.81 -51.93 -0.25 0.19 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 37 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.59 7.95 -51.93 -0.41 0.18 16 40 H 0.05 0.59 7.95 -51.93 -0.41 0.18 16 41 H 0.39 4.65 7.67 -40.82 -0.31 4.33 16 42 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 46 H 0.11 1.76 6.73 -52.49 -0.35 1.41 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -31.06 369.08 -9.37 -40.43 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.98 Total: 4.92 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -2.36 Total: -25.36 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.44 Total: -36.11 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: 0.00 Total: -5.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.06 -9.37 -40.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253499221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.703 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds