Wall clock time and date at job start Tue Mar 31 2020 07:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47253 * 239.99971 * 2 1 3 5 5 C 1.52996 * 109.47128 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47531 * 59.99799 * 5 4 2 7 7 C 1.53004 * 109.47376 * 300.00368 * 6 5 4 8 8 H 1.08998 * 109.46929 * 300.00088 * 7 6 5 9 9 C 1.52990 * 109.47495 * 179.97438 * 7 6 5 10 10 N 1.46502 * 109.47140 * 64.99629 * 9 7 6 11 11 C 1.39786 * 120.00218 * 180.02562 * 10 9 7 12 12 C 1.38950 * 120.00729 * 180.02562 * 11 10 9 13 13 C 1.38004 * 119.99472 * 180.02562 * 12 11 10 14 14 C 1.38899 * 120.00488 * 359.97438 * 13 12 11 15 15 O 1.35798 * 119.99511 * 179.97438 * 14 13 12 16 16 C 1.34813 * 116.99884 * 5.54665 * 15 14 13 17 17 H 1.07999 * 120.00030 * 354.93687 * 16 15 14 18 18 C 1.38622 * 119.99902 * 174.66996 * 16 15 14 19 19 N 1.31573 * 120.00475 * 0.26764 * 18 16 15 20 20 Si 1.86810 * 119.99581 * 180.27333 * 18 16 15 21 21 H 1.48494 * 109.47303 * 60.00000 * 20 18 16 22 22 H 1.48500 * 109.46738 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46848 * 299.99408 * 20 18 16 24 24 C 1.38903 * 120.01497 * 0.25777 * 14 13 12 25 25 C 1.38010 * 120.00229 * 359.48843 * 24 14 13 26 26 C 1.52999 * 109.46694 * 119.99965 * 2 1 3 27 27 H 1.09002 * 109.47411 * 299.99812 * 1 2 3 28 28 H 1.08998 * 109.46624 * 60.00271 * 1 2 3 29 29 H 1.08998 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47130 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47625 * 299.99712 * 3 2 1 32 32 H 1.09008 * 109.47421 * 60.00261 * 3 2 1 33 33 H 1.09002 * 109.47017 * 300.00276 * 4 2 1 34 34 H 1.09002 * 109.47336 * 59.99816 * 4 2 1 35 35 H 1.09002 * 109.47286 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47113 * 299.99870 * 5 4 2 37 37 H 1.09001 * 109.47651 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.46865 * 59.99919 * 6 5 4 39 39 H 1.09003 * 109.47391 * 305.00284 * 9 7 6 40 40 H 1.08996 * 109.47518 * 184.99891 * 9 7 6 41 41 H 0.97001 * 119.99692 * 0.02562 * 10 9 7 42 42 H 1.08003 * 120.00028 * 359.97438 * 12 11 10 43 43 H 1.08001 * 119.99653 * 179.97438 * 13 12 11 44 44 H 0.97000 * 120.00358 * 180.02562 * 19 18 16 45 45 H 1.07997 * 119.99513 * 179.72175 * 24 14 13 46 46 H 1.08000 * 120.00328 * 180.25366 * 25 24 14 47 47 H 1.08998 * 109.47457 * 60.00373 * 26 2 1 48 48 H 1.09000 * 109.47624 * 299.99765 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0796 -1.4433 0.0003 7 6 3.5696 -0.7221 1.2496 8 1 3.9332 0.3054 1.2498 9 6 4.0785 -1.4440 2.4988 10 7 5.5387 -1.3416 2.5611 11 6 6.2359 -1.9290 3.6208 12 6 7.6207 -1.8315 3.6802 13 6 8.3089 -2.4119 4.7262 14 6 7.6173 -3.0930 5.7197 15 8 8.2947 -3.6645 6.7486 16 6 9.6222 -3.4372 6.8086 17 1 10.1133 -2.8931 6.0154 18 6 10.3559 -3.8970 7.8912 19 7 9.7577 -4.5599 8.8576 20 14 12.1940 -3.5753 7.9780 21 1 12.4411 -2.1110 7.9731 22 1 12.7412 -4.1649 9.2263 23 1 12.8607 -4.1938 6.8041 24 6 6.2334 -3.1948 5.6580 25 6 5.5443 -2.6100 4.6150 26 6 2.0400 -0.7213 1.2493 27 1 -0.3634 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.9334 -1.2352 -2.1391 36 1 3.9338 0.3058 -1.2487 37 1 5.1696 -1.4441 0.0004 38 1 3.7159 -2.4709 0.0001 39 1 3.7896 -2.4941 2.4548 40 1 3.6439 -0.9845 3.3865 41 1 6.0215 -0.8662 1.8670 42 1 8.1585 -1.3022 2.9075 43 1 9.3853 -2.3365 4.7723 44 1 10.2710 -4.8813 9.6153 45 1 5.6964 -3.7283 6.4283 46 1 4.4679 -2.6856 4.5692 47 1 1.6767 -1.7489 1.2493 48 1 1.6767 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253499221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:09 Heat of formation + Delta-G solvation = -47.417174 kcal Electronic energy + Delta-G solvation = -24281.827349 eV Core-core repulsion = 20914.222180 eV Total energy + Delta-G solvation = -3367.605170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88862 -40.47309 -38.67295 -36.25263 -34.26417 -33.65695 -32.31986 -31.73356 -28.98608 -28.16612 -27.37106 -27.16343 -25.83391 -23.74916 -22.77292 -22.34787 -21.26398 -19.64485 -19.27912 -18.80412 -17.78559 -16.69631 -16.22672 -16.14355 -15.88447 -15.48282 -15.40565 -15.23859 -15.21682 -14.79860 -14.65397 -14.30945 -14.05284 -13.91927 -13.66896 -13.42149 -13.18908 -12.99459 -12.81671 -12.72226 -12.55176 -12.51099 -12.34461 -12.26252 -12.14784 -12.02915 -11.78658 -11.71660 -11.09421 -11.04838 -10.90192 -10.86375 -10.76921 -10.14703 -9.76452 -8.38306 -7.90950 -6.01989 0.59607 0.94891 1.36824 1.48349 1.53135 2.23464 2.69359 2.92462 3.26561 3.66753 3.70924 3.75712 3.82413 4.10685 4.13456 4.19450 4.24410 4.36424 4.45388 4.51319 4.57605 4.60284 4.66389 4.71286 4.77085 4.78165 4.85516 4.88886 4.97103 5.00391 5.05360 5.12287 5.14470 5.15654 5.21184 5.24950 5.28914 5.34144 5.36249 5.45708 5.48392 5.53847 5.55502 5.56547 5.71280 5.79582 6.00738 6.12272 6.64139 7.05709 7.08605 7.94509 8.86032 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.039989 B = 0.002251 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.018117 B =12436.470071 C =12788.566770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.144 4.144 4 C -0.106 4.106 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.087 4.087 8 H 0.080 0.920 9 C 0.134 3.866 10 N -0.744 5.744 11 C 0.153 3.847 12 C -0.146 4.146 13 C -0.193 4.193 14 C 0.061 3.939 15 O -0.243 6.243 16 C -0.406 4.406 17 H 0.098 0.902 18 C -0.030 4.030 19 N -0.927 5.927 20 Si 1.017 2.983 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.156 4.156 25 C -0.146 4.146 26 C -0.099 4.099 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.402 0.598 42 H 0.139 0.861 43 H 0.119 0.881 44 H 0.270 0.730 45 H 0.112 0.888 46 H 0.140 0.860 47 H 0.063 0.937 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.197 11.553 -22.326 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.062 4.062 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.105 4.105 8 H 0.099 0.901 9 C 0.009 3.991 10 N -0.378 5.378 11 C 0.052 3.948 12 C -0.169 4.169 13 C -0.213 4.213 14 C 0.011 3.989 15 O -0.151 6.151 16 C -0.483 4.483 17 H 0.115 0.885 18 C -0.226 4.226 19 N -0.567 5.567 20 Si 0.837 3.163 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.176 4.176 25 C -0.169 4.169 26 C -0.137 4.137 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.237 0.763 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.078 0.922 45 H 0.130 0.870 46 H 0.158 0.842 47 H 0.081 0.919 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.442 11.280 -21.937 29.644 hybrid contribution 1.048 -0.088 0.359 1.111 sum -15.394 11.192 -21.578 28.772 Atomic orbital electron populations 1.21857 0.94251 1.01807 1.01915 1.20497 0.95424 0.95498 0.94784 1.21970 1.01386 0.95136 1.01660 1.21581 0.95325 1.00260 0.97199 1.21562 0.95832 1.00917 0.97331 1.21547 1.00163 0.99098 0.94050 1.21291 0.96240 0.99822 0.93174 0.90148 1.21339 0.79982 0.99714 0.98046 1.44327 1.05597 1.62203 1.25713 1.17543 0.90702 0.96397 0.90180 1.20494 0.92567 1.04268 0.99526 1.21055 1.00214 1.03630 0.96371 1.19735 0.92774 0.96336 0.90051 1.83934 1.22127 1.65536 1.43496 1.21714 0.80996 1.37647 1.07940 0.88462 1.26543 1.05777 0.96270 0.93981 1.70197 1.38657 1.37521 1.10307 0.84673 0.73919 0.79278 0.78475 1.18303 1.19804 1.18227 1.20228 0.90741 1.05437 1.01166 1.20422 0.99570 1.02279 0.94603 1.21544 0.93512 1.00816 0.97826 0.92656 0.92286 0.92710 0.92170 0.92474 0.92938 0.92310 0.91634 0.91913 0.91425 0.92270 0.92565 0.93221 0.93094 0.76276 0.84336 0.86314 0.92162 0.87009 0.84237 0.91863 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.47 71.98 0.61 -0.84 16 2 C -0.06 -0.69 0.77 -52.18 -0.04 -0.73 16 3 C -0.14 -1.57 7.78 71.98 0.56 -1.01 16 4 C -0.11 -1.17 4.73 30.59 0.14 -1.02 16 5 C -0.12 -1.39 5.65 30.59 0.17 -1.22 16 6 C -0.11 -1.55 5.08 30.59 0.16 -1.40 16 7 C -0.09 -1.23 1.95 -10.81 -0.02 -1.25 16 8 H 0.08 1.14 6.43 -2.39 -0.02 1.12 16 9 C 0.13 2.57 4.30 86.38 0.37 2.94 16 10 N -0.74 -17.38 5.46 -339.26 -1.85 -19.24 16 11 C 0.15 4.97 6.66 38.21 0.25 5.22 16 12 C -0.15 -5.21 9.89 22.38 0.22 -4.99 16 13 C -0.19 -8.70 9.16 22.37 0.20 -8.50 16 14 C 0.06 3.14 6.65 22.59 0.15 3.29 16 15 O -0.24 -15.20 9.76 -23.10 -0.23 -15.43 16 16 C -0.41 -24.51 9.48 67.91 0.64 -23.86 16 17 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 18 C -0.03 -1.74 5.49 84.82 0.47 -1.28 16 19 N -0.93 -58.85 13.67 21.61 0.30 -58.55 16 20 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 C -0.16 -6.96 9.98 22.38 0.22 -6.74 16 25 C -0.15 -5.20 9.30 22.39 0.21 -4.99 16 26 C -0.10 -1.27 4.01 30.58 0.12 -1.14 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.68 4.81 -2.39 -0.01 0.67 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.76 6.43 -2.39 -0.02 0.74 16 37 H 0.06 0.88 7.18 -2.39 -0.02 0.87 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 1.02 7.95 -2.39 -0.02 1.00 16 40 H 0.05 1.03 7.95 -2.39 -0.02 1.01 16 41 H 0.40 7.91 7.67 -92.71 -0.71 7.20 16 42 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.12 5.42 5.63 -2.91 -0.02 5.40 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 46 H 0.14 4.09 6.73 -2.91 -0.02 4.07 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.28 369.08 4.92 -66.36 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.23 Total: 28.02 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 4.45 Total: -47.51 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.56 Total: -77.79 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.23 Total: -15.43 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.28 4.92 -66.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253499221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.941 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds