Wall clock time and date at job start Tue Mar 31 2020 09:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.52999 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46890 * 179.97438 * 4 3 2 6 6 H 1.09005 * 110.01892 * 305.06621 * 5 4 3 7 7 C 1.53871 * 110.03106 * 66.45661 * 5 4 3 8 8 C 1.54267 * 106.59691 * 119.28461 * 7 5 4 9 9 C 1.54889 * 104.19670 * 23.61053 * 8 7 5 10 10 C 1.54270 * 110.03180 * 183.62243 * 5 4 3 11 11 H 1.08998 * 110.48451 * 335.78915 * 10 5 4 12 12 N 1.46505 * 110.48484 * 98.42574 * 10 5 4 13 13 C 1.39780 * 120.00066 * 205.00003 * 12 10 5 14 14 C 1.38949 * 120.00647 * 359.72988 * 13 12 10 15 15 C 1.38010 * 119.99446 * 179.72031 * 14 13 12 16 16 C 1.38902 * 120.00519 * 0.55386 * 15 14 13 17 17 O 1.35794 * 119.99383 * 179.69973 * 16 15 14 18 18 C 1.34806 * 116.99844 * 174.47688 * 17 16 15 19 19 H 1.07994 * 120.00082 * 5.06426 * 18 17 16 20 20 C 1.38625 * 120.00103 * 185.05634 * 18 17 16 21 21 N 1.31581 * 119.99553 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00141 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47380 * 60.00305 * 22 20 18 24 24 H 1.48508 * 109.47155 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47379 * 300.00193 * 22 20 18 26 26 C 1.38891 * 120.00970 * 359.72023 * 16 15 14 27 27 C 1.38015 * 120.01123 * 0.02562 * 26 16 15 28 28 H 1.08993 * 109.47378 * 299.99996 * 1 2 3 29 29 H 1.09005 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47045 * 60.00233 * 1 2 3 31 31 H 1.09005 * 109.46694 * 120.00079 * 2 1 3 32 32 H 1.08993 * 109.47122 * 239.99517 * 2 1 3 33 33 H 1.09000 * 109.47022 * 299.99781 * 3 2 1 34 34 H 1.09003 * 109.47054 * 59.99801 * 3 2 1 35 35 H 1.08997 * 109.47713 * 300.00413 * 4 3 2 36 36 H 1.09003 * 109.47070 * 60.00258 * 4 3 2 37 37 H 1.09001 * 110.03338 * 238.56532 * 7 5 4 38 38 H 1.08998 * 110.03438 * 359.97438 * 7 5 4 39 39 H 1.09006 * 110.48480 * 142.28861 * 8 7 5 40 40 H 1.08997 * 110.48908 * 264.79549 * 8 7 5 41 41 H 1.09003 * 110.75901 * 80.37336 * 9 8 7 42 42 H 1.09006 * 110.75714 * 203.74266 * 9 8 7 43 43 H 0.97002 * 120.00153 * 25.00219 * 12 10 5 44 44 H 1.08004 * 120.00189 * 359.97438 * 14 13 12 45 45 H 1.08007 * 119.99530 * 180.25276 * 15 14 13 46 46 H 0.97001 * 119.99869 * 179.97438 * 21 20 18 47 47 H 1.07999 * 119.99859 * 180.02562 * 26 16 15 48 48 H 1.08000 * 120.00540 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6500 3.4324 -0.8388 7 6 3.7107 3.5752 1.3247 8 6 5.0391 3.9865 1.9925 9 6 6.0417 4.0837 0.8159 10 6 5.6199 2.9010 -0.0909 11 1 6.0340 1.9654 0.2849 12 7 6.0496 3.1352 -1.4719 13 6 7.3036 2.6891 -1.8988 14 6 8.1451 2.0286 -1.0121 15 6 9.3809 1.5832 -1.4355 16 6 9.7881 1.8054 -2.7447 17 8 11.0066 1.3724 -3.1594 18 6 11.2946 1.5171 -4.4683 19 1 10.6050 2.0341 -5.1190 20 6 12.4761 1.0025 -4.9791 21 7 13.3162 0.3724 -4.1863 22 14 12.8756 1.2037 -6.7927 23 1 12.9392 2.6489 -7.1283 24 1 14.1862 0.5692 -7.0842 25 1 11.8187 0.5524 -7.6076 26 6 8.9495 2.4706 -3.6297 27 6 7.7114 2.9116 -3.2083 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.9331 0.9287 0.8908 36 1 3.9337 0.9285 -0.8892 37 1 3.1022 4.4580 1.1288 38 1 3.1678 2.8826 1.9679 39 1 4.9348 4.9530 2.4857 40 1 5.3582 3.2274 2.7067 41 1 5.9301 5.0322 0.2906 42 1 7.0649 3.9542 1.1686 43 1 5.4638 3.5998 -2.0899 44 1 7.8305 1.8601 0.0073 45 1 10.0333 1.0662 -0.7473 46 1 14.1428 0.0119 -4.5437 47 1 9.2661 2.6429 -4.6478 48 1 7.0596 3.4293 -3.8965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254997175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:34 Heat of formation + Delta-G solvation = -32.641702 kcal Electronic energy + Delta-G solvation = -24191.360703 eV Core-core repulsion = 20824.396247 eV Total energy + Delta-G solvation = -3366.964457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.55727 -38.60960 -36.68372 -35.52476 -33.39729 -31.97100 -31.49413 -30.18306 -28.32545 -27.37752 -26.28095 -24.91057 -23.23966 -22.16697 -21.55180 -20.92646 -20.08730 -19.67783 -17.75569 -17.16077 -16.22703 -16.20528 -15.52521 -15.11593 -14.55662 -14.31422 -14.17790 -13.73753 -13.64960 -13.56116 -13.41250 -13.23498 -12.64089 -12.58098 -12.46537 -12.35576 -12.16010 -11.83722 -11.57261 -11.48735 -11.33310 -11.16172 -11.15057 -10.98327 -10.93439 -10.74062 -10.60707 -10.54115 -10.49863 -10.46333 -10.29911 -9.19397 -9.10364 -8.39409 -8.12863 -6.34403 -6.29100 -3.86457 2.24446 2.61939 3.20436 3.21715 3.24090 3.85718 4.08606 4.32939 4.49034 4.60133 4.72528 4.78520 4.79089 4.89598 5.12255 5.21637 5.23592 5.31403 5.33774 5.39956 5.44190 5.49057 5.52165 5.52747 5.63151 5.64422 5.70657 5.78320 5.79679 5.83259 5.85624 5.87762 5.96978 6.06242 6.12658 6.17315 6.21522 6.23292 6.26938 6.35866 6.60659 6.90663 6.96856 7.18540 7.35631 7.49788 7.69370 8.05065 8.15176 8.30901 9.16517 9.91730 10.89416 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.002582 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.022889 B =10843.330784 C =11566.140893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.097 4.097 6 H 0.073 0.927 7 C -0.118 4.118 8 C -0.125 4.125 9 C -0.141 4.141 10 C 0.160 3.840 11 H 0.082 0.918 12 N -0.751 5.751 13 C 0.127 3.873 14 C -0.146 4.146 15 C -0.150 4.150 16 C 0.112 3.888 17 O -0.189 6.189 18 C -0.386 4.386 19 H 0.087 0.913 20 C 0.036 3.964 21 N -0.870 5.870 22 Si 0.937 3.063 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.272 1.272 26 C -0.190 4.190 27 C -0.144 4.144 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.389 0.611 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.267 0.733 47 H 0.126 0.874 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.343 4.499 9.810 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.150 4.150 5 C -0.116 4.116 6 H 0.091 0.909 7 C -0.155 4.155 8 C -0.163 4.163 9 C -0.180 4.180 10 C 0.053 3.947 11 H 0.100 0.900 12 N -0.385 5.385 13 C 0.029 3.971 14 C -0.168 4.168 15 C -0.170 4.170 16 C 0.060 3.940 17 O -0.094 6.094 18 C -0.463 4.463 19 H 0.104 0.896 20 C -0.167 4.167 21 N -0.506 5.506 22 Si 0.763 3.237 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.197 1.197 26 C -0.210 4.210 27 C -0.166 4.166 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.222 0.778 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.077 0.923 47 H 0.144 0.856 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.905 4.201 10.068 24.471 hybrid contribution -0.059 0.355 -1.241 1.292 sum -21.964 4.556 8.827 24.106 Atomic orbital electron populations 1.21778 0.96109 1.01463 1.01635 1.21550 0.95628 0.97166 1.02101 1.21649 0.95579 0.96530 1.01872 1.21686 0.95044 0.95872 1.02397 1.22009 0.95197 0.96348 0.98031 0.90889 1.22189 0.97471 0.99898 0.95992 1.22312 0.95192 1.01116 0.97661 1.23017 0.99110 0.99603 0.96315 1.21618 0.92572 0.97628 0.82840 0.90048 1.44279 1.16727 1.66888 1.10593 1.17399 0.86612 0.99951 0.93137 1.20193 0.94454 1.03869 0.98303 1.20031 0.96750 1.05697 0.94544 1.19232 0.86791 0.94928 0.93062 1.83983 1.26165 1.72321 1.26944 1.21176 1.05538 1.37315 0.82282 0.89558 1.25208 0.95326 0.96318 0.99871 1.70041 1.10193 1.35127 1.35288 0.85843 0.78074 0.78702 0.81125 1.19706 1.20442 1.19713 1.20980 0.94945 1.04285 1.00764 1.20228 0.97178 1.05147 0.94038 0.92902 0.92913 0.92856 0.92108 0.92003 0.92235 0.92018 0.91887 0.91610 0.92062 0.91553 0.91905 0.91663 0.91345 0.91391 0.77760 0.87158 0.86618 0.92291 0.85602 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -0.90 5.03 -26.73 -0.13 -1.03 16 4 C -0.11 -0.99 4.36 -26.73 -0.12 -1.10 16 5 C -0.10 -0.86 2.67 -89.50 -0.24 -1.10 16 6 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 7 C -0.12 -0.92 5.95 -25.61 -0.15 -1.08 16 8 C -0.12 -1.06 6.83 -25.07 -0.17 -1.24 16 9 C -0.14 -1.51 6.58 -24.74 -0.16 -1.67 16 10 C 0.16 1.80 2.45 -66.27 -0.16 1.64 16 11 H 0.08 1.00 6.12 -51.93 -0.32 0.69 16 12 N -0.75 -9.99 5.34 -50.51 -0.27 -10.26 16 13 C 0.13 2.19 6.66 -83.71 -0.56 1.64 16 14 C -0.15 -2.67 9.21 -39.40 -0.36 -3.04 16 15 C -0.15 -3.26 9.98 -39.42 -0.39 -3.65 16 16 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 17 O -0.19 -5.56 9.76 -0.02 0.00 -5.56 16 18 C -0.39 -11.11 9.48 30.88 0.29 -10.82 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 20 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 21 N -0.87 -26.27 13.67 55.48 0.76 -25.51 16 22 Si 0.94 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 C -0.19 -4.22 9.16 -39.42 -0.36 -4.59 16 27 C -0.14 -2.69 9.89 -39.40 -0.39 -3.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.44 6.90 -51.93 -0.36 0.08 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.48 6.77 -51.93 -0.35 0.13 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.39 4.61 8.38 -40.82 -0.34 4.27 16 44 H 0.11 1.75 6.20 -52.48 -0.33 1.42 16 45 H 0.12 2.43 8.06 -52.48 -0.42 2.00 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 48 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -30.81 379.10 -10.02 -40.83 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.14 Total: 6.10 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -3.06 Total: -27.44 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.49 Total: -35.77 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.00 Total: -5.56 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.81 -10.02 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254997175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.192 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds