Wall clock time and date at job start Tue Mar 31 2020 09:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46996 * 2 1 4 4 C 1.53006 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46996 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47102 * 304.99577 * 5 4 3 7 7 C 1.52998 * 109.47285 * 184.99956 * 5 4 3 8 8 N 1.46495 * 109.47438 * 64.99778 * 5 4 3 9 9 C 1.46498 * 120.00015 * 59.99742 * 8 5 4 10 10 C 1.34779 * 120.00255 * 240.00240 * 8 5 4 11 11 O 1.21285 * 119.99897 * 359.97438 * 10 8 5 12 12 C 1.50696 * 120.00338 * 180.02562 * 10 8 5 13 13 H 1.09008 * 109.46841 * 299.99647 * 12 10 8 14 14 C 1.50703 * 109.47362 * 59.99143 * 12 10 8 15 15 H 1.07998 * 119.99573 * 27.31176 * 14 12 10 16 16 C 1.37873 * 120.00256 * 207.29652 * 14 12 10 17 17 N 1.31519 * 120.00043 * 5.91727 * 16 14 12 18 18 Si 1.86798 * 120.00239 * 185.91141 * 16 14 12 19 19 H 1.48508 * 109.46848 * 60.00371 * 18 16 14 20 20 H 1.48498 * 109.47459 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47312 * 300.00847 * 18 16 14 22 22 C 1.50697 * 109.47256 * 179.97438 * 12 10 8 23 23 C 1.38234 * 119.99918 * 293.56370 * 22 12 10 24 24 C 1.38237 * 119.99922 * 179.80952 * 23 22 12 25 25 C 1.38234 * 120.00014 * 0.40296 * 24 23 22 26 26 C 1.38239 * 120.00121 * 359.84681 * 25 24 23 27 27 C 1.38233 * 119.99775 * 359.96538 * 26 25 24 28 28 H 1.09001 * 109.46651 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47152 * 300.00075 * 1 2 3 30 30 H 1.08999 * 109.46579 * 60.00403 * 1 2 3 31 31 H 1.09002 * 109.46914 * 239.99519 * 2 1 3 32 32 H 1.09004 * 109.47018 * 119.99708 * 2 1 3 33 33 H 1.09004 * 109.46998 * 299.99720 * 3 2 1 34 34 H 1.08997 * 109.47231 * 59.99973 * 3 2 1 35 35 H 1.08999 * 109.46579 * 299.99597 * 4 3 2 36 36 H 1.08997 * 109.47152 * 59.99925 * 4 3 2 37 37 H 1.09001 * 109.47078 * 59.99475 * 7 5 4 38 38 H 1.08990 * 109.47462 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.46741 * 299.99842 * 7 5 4 40 40 H 1.09000 * 109.46953 * 90.00282 * 9 8 5 41 41 H 1.08997 * 109.47331 * 210.00010 * 9 8 5 42 42 H 1.09002 * 109.47535 * 330.00144 * 9 8 5 43 43 H 0.97003 * 119.99956 * 179.97438 * 17 16 14 44 44 H 1.08001 * 120.00230 * 359.97438 * 23 22 12 45 45 H 1.07999 * 119.99936 * 180.22918 * 24 23 22 46 46 H 1.08004 * 120.00173 * 179.83694 * 25 24 23 47 47 H 1.07997 * 120.00280 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.99872 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6451 3.4245 -0.8414 7 6 5.6048 2.8869 -0.1264 8 7 3.6930 3.5392 1.2523 9 6 4.1549 3.0000 2.5337 10 6 2.9118 4.6373 1.2255 11 8 2.5297 5.0839 0.1647 12 6 2.5142 5.3107 2.5137 13 1 1.9590 4.6076 3.1348 14 6 3.7508 5.7613 3.2476 15 1 4.6504 5.9946 2.6974 16 6 3.7338 5.8762 4.6215 17 7 2.6789 5.4825 5.3012 18 14 5.2089 6.5907 5.5174 19 1 5.4512 7.9774 5.0445 20 1 4.9417 6.6049 6.9781 21 1 6.4068 5.7574 5.2419 22 6 1.6477 6.5055 2.2093 23 6 2.1809 7.5949 1.5461 24 6 1.3852 8.6893 1.2633 25 6 0.0584 8.6977 1.6512 26 6 -0.4735 7.6105 2.3190 27 6 0.3212 6.5145 2.5983 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.9337 0.9286 0.8892 36 1 3.9330 0.9288 -0.8908 37 1 5.8928 2.4001 -1.0581 38 1 5.9681 3.9145 -0.1254 39 1 6.0397 2.3474 0.7150 40 1 5.1064 3.4604 2.7998 41 1 3.4175 3.2173 3.3064 42 1 4.2846 1.9211 2.4484 43 1 2.6671 5.5630 6.2678 44 1 3.2185 7.5899 1.2464 45 1 1.8008 9.5388 0.7419 46 1 -0.5627 9.5539 1.4326 47 1 -1.5100 7.6172 2.6224 48 1 -0.0942 5.6652 3.1203 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274864015.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:00 Heat of formation + Delta-G solvation = -48.893921 kcal Electronic energy + Delta-G solvation = -26020.672076 eV Core-core repulsion = 22653.002870 eV Total energy + Delta-G solvation = -3367.669206 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13774 -39.59119 -37.75220 -35.85578 -35.41059 -33.13187 -32.45950 -31.54264 -29.80628 -28.97583 -27.57668 -25.82558 -24.99007 -23.23781 -22.95115 -21.90525 -21.29853 -19.72460 -18.69210 -17.94574 -17.43682 -17.02802 -16.41323 -16.16366 -15.89165 -15.66337 -15.35640 -14.99659 -14.58559 -14.45659 -14.11848 -14.03920 -13.90063 -13.65293 -13.38591 -13.32286 -13.25805 -13.21239 -12.97594 -12.85864 -12.76077 -12.64825 -12.18783 -12.17073 -11.96734 -11.94638 -11.64320 -11.62502 -11.42308 -11.40079 -11.25969 -10.62748 -10.29355 -9.56710 -9.35637 -9.25193 -8.17414 -6.25558 0.74991 0.80422 1.42141 1.45568 1.50800 1.97806 2.38648 2.44775 3.11203 3.26216 3.70301 4.04571 4.11522 4.18434 4.23609 4.28842 4.37884 4.40802 4.43937 4.46512 4.48414 4.54581 4.60573 4.77506 4.83288 4.86229 4.90174 4.94155 4.95154 4.98157 5.05437 5.12160 5.13954 5.20051 5.26857 5.29568 5.36124 5.38405 5.44124 5.45118 5.52124 5.66951 5.77403 5.81295 5.94855 6.00968 6.25142 6.39761 6.66212 6.76114 7.38578 7.55864 8.90651 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.005803 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.176370 B = 4824.142476 C = 6049.025290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.115 4.115 4 C -0.117 4.117 5 C 0.126 3.874 6 H 0.069 0.931 7 C -0.150 4.150 8 N -0.600 5.600 9 C 0.103 3.897 10 C 0.524 3.476 11 O -0.597 6.597 12 C 0.059 3.941 13 H 0.061 0.939 14 C -0.504 4.504 15 H 0.047 0.953 16 C 0.041 3.959 17 N -0.902 5.902 18 Si 0.943 3.057 19 H -0.282 1.282 20 H -0.284 1.284 21 H -0.263 1.263 22 C -0.037 4.037 23 C -0.110 4.110 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.266 0.734 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.147 0.853 47 H 0.139 0.861 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 -7.965 -6.948 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.153 4.153 4 C -0.155 4.155 5 C 0.023 3.977 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.331 5.331 9 C -0.039 4.039 10 C 0.315 3.685 11 O -0.480 6.480 12 C 0.038 3.962 13 H 0.079 0.921 14 C -0.542 4.542 15 H 0.065 0.935 16 C -0.161 4.161 17 N -0.539 5.539 18 Si 0.769 3.231 19 H -0.208 1.208 20 H -0.209 1.209 21 H -0.188 1.188 22 C -0.038 4.038 23 C -0.128 4.128 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.147 4.147 27 C -0.160 4.160 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.111 0.889 45 H 0.152 0.848 46 H 0.165 0.835 47 H 0.157 0.843 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.084 -7.792 -7.293 10.673 hybrid contribution 0.692 0.687 0.913 1.336 sum 0.776 -7.105 -6.379 9.580 Atomic orbital electron populations 1.21789 0.96187 1.02019 1.01168 1.21484 0.95726 0.95421 1.02649 1.21509 0.96081 0.97379 1.00313 1.21907 0.95091 0.94681 1.03790 1.21201 0.95896 0.94004 0.86613 0.91307 1.22045 0.93782 1.01513 1.03443 1.47760 1.49967 1.27659 1.07753 1.21597 1.00138 0.98108 0.84089 1.21395 0.76387 0.79467 0.91251 1.90522 1.57669 1.65723 1.34049 1.17950 0.95959 0.92032 0.90270 0.92097 1.20523 0.95581 1.46889 0.91223 0.93463 1.25424 0.98142 0.94658 0.97875 1.69982 1.30272 1.45996 1.07687 0.85836 0.80634 0.79122 0.77507 1.20797 1.20893 1.18751 1.20180 0.93429 0.96671 0.93517 1.20828 0.98872 0.94159 0.98975 1.21319 0.94876 0.98135 1.01062 1.21257 0.95359 0.99175 1.00351 1.21292 1.00152 0.93698 0.99596 1.21113 0.93997 0.99375 1.01531 0.91247 0.94087 0.93220 0.90590 0.91540 0.93793 0.94913 0.90479 0.88705 0.89398 0.94469 0.91255 0.93331 0.92155 0.90000 0.92489 0.88940 0.84764 0.83536 0.84304 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.12 -2.45 5.93 30.60 0.18 -2.26 16 3 C -0.11 -3.17 5.10 30.60 0.16 -3.01 16 4 C -0.12 -2.82 4.64 30.60 0.14 -2.68 16 5 C 0.13 3.91 2.64 44.99 0.12 4.03 16 6 H 0.07 2.51 6.90 -2.39 -0.02 2.49 16 7 C -0.15 -3.84 9.19 71.98 0.66 -3.18 16 8 N -0.60 -22.93 2.21 -822.62 -1.82 -24.75 16 9 C 0.10 3.65 8.20 127.77 1.05 4.70 16 10 C 0.52 24.58 6.97 87.66 0.61 25.19 16 11 O -0.60 -30.71 14.76 -3.04 -0.04 -30.76 16 12 C 0.06 2.94 1.55 -13.03 -0.02 2.92 16 13 H 0.06 3.28 6.46 -2.38 -0.02 3.26 16 14 C -0.50 -25.74 5.48 25.60 0.14 -25.60 16 15 H 0.05 2.48 7.82 -2.91 -0.02 2.46 16 16 C 0.04 2.09 5.45 84.65 0.46 2.55 16 17 N -0.90 -48.07 12.88 21.45 0.28 -47.80 16 18 Si 0.94 41.12 29.54 68.60 2.03 43.15 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 C -0.04 -1.83 4.29 -19.87 -0.09 -1.92 16 23 C -0.11 -5.20 8.33 22.27 0.19 -5.02 16 24 C -0.14 -5.37 10.05 22.27 0.22 -5.14 16 25 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 26 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 27 C -0.14 -6.48 9.67 22.27 0.22 -6.27 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.03 1.10 7.75 -2.39 -0.02 1.09 16 35 H 0.08 1.70 6.47 -2.39 -0.02 1.68 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.60 7.67 -2.39 -0.02 1.59 16 40 H 0.05 1.76 7.88 -2.39 -0.02 1.74 16 41 H 0.06 2.50 6.14 -2.39 -0.01 2.48 16 42 H 0.08 2.25 6.34 -2.39 -0.02 2.23 16 43 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 44 H 0.09 4.55 7.88 -2.91 -0.02 4.53 16 45 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 47 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 48 H 0.10 4.72 7.96 -2.91 -0.02 4.70 16 Total: -1.00 -62.71 383.27 6.54 -56.17 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.90 Total: 31.87 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 5.20 Total: -27.88 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.54 Total: -72.55 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.04 Total: -30.76 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -62.71 6.54 -56.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274864015.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.273 kcal (2) G-P(sol) polarization free energy of solvation -62.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds