Wall clock time and date at job start Tue Mar 31 2020 08:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.46746 * 2 1 4 4 C 1.38384 * 119.85531 * 265.24548 * 3 2 1 5 5 C 1.37933 * 120.14363 * 180.29360 * 4 3 2 6 6 C 1.39596 * 119.85495 * 359.73458 * 5 4 3 7 7 C 1.47840 * 120.14526 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99993 * 133.25800 * 7 6 5 9 9 N 1.34774 * 120.00201 * 313.25172 * 7 6 5 10 10 C 1.46505 * 119.99961 * 182.59984 * 9 7 6 11 11 C 1.50703 * 109.46983 * 90.00804 * 10 9 7 12 12 H 1.07997 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00110 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00133 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99875 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47095 * 90.00123 * 15 13 11 17 17 H 1.48501 * 109.47188 * 210.00097 * 15 13 11 18 18 H 1.48506 * 109.47340 * 329.99870 * 15 13 11 19 19 C 1.46493 * 120.00089 * 2.60706 * 9 7 6 20 20 C 1.53004 * 109.47587 * 113.37104 * 19 9 7 21 21 C 1.52999 * 109.47424 * 233.37552 * 19 9 7 22 22 C 1.39558 * 119.71022 * 359.97438 * 6 5 4 23 23 C 1.37976 * 119.85516 * 0.02562 * 22 6 5 24 24 C 1.50696 * 119.93229 * 179.97438 * 23 22 6 25 25 C 1.52995 * 109.47454 * 265.00209 * 24 23 22 26 26 H 1.08994 * 109.47362 * 299.99810 * 1 2 3 27 27 H 1.08999 * 109.47227 * 60.00505 * 1 2 3 28 28 H 1.09007 * 109.46534 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47641 * 240.00213 * 2 1 3 30 30 H 1.08998 * 109.47676 * 119.99782 * 2 1 3 31 31 H 1.08003 * 119.92540 * 0.03250 * 4 3 2 32 32 H 1.08000 * 120.07455 * 179.70924 * 5 4 3 33 33 H 1.09005 * 109.46971 * 210.00428 * 10 9 7 34 34 H 1.08999 * 109.47329 * 330.00321 * 10 9 7 35 35 H 0.97001 * 119.99908 * 180.02562 * 14 13 11 36 36 H 1.09009 * 109.47087 * 353.37085 * 19 9 7 37 37 H 1.08998 * 109.46523 * 60.00157 * 20 19 9 38 38 H 1.08994 * 109.46982 * 180.02562 * 20 19 9 39 39 H 1.08998 * 109.46762 * 300.00384 * 20 19 9 40 40 H 1.08999 * 109.47161 * 59.99611 * 21 19 9 41 41 H 1.09004 * 109.47438 * 179.97438 * 21 19 9 42 42 H 1.09000 * 109.46621 * 299.99713 * 21 19 9 43 43 H 1.07999 * 120.07313 * 180.02562 * 22 6 5 44 44 H 1.09004 * 109.47370 * 144.99589 * 24 23 22 45 45 H 1.09003 * 109.46829 * 25.00338 * 24 23 22 46 46 H 1.09001 * 109.47394 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.47208 * 299.99897 * 25 24 23 48 48 H 1.09000 * 109.47084 * 59.99805 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3556 2.0373 -1.1961 5 6 2.8216 3.3355 -1.2025 6 6 2.9614 4.0296 0.0006 7 6 3.4597 5.4215 0.0011 8 8 2.8877 6.2715 0.6552 9 7 4.5482 5.7478 -0.7234 10 6 5.0757 7.1139 -0.6782 11 6 6.0915 7.2236 0.4297 12 1 6.3207 6.3622 1.0393 13 6 6.7272 8.4241 0.6657 14 7 7.6133 8.5200 1.6328 15 14 6.3300 9.9143 -0.3884 16 1 5.2099 10.6710 0.2263 17 1 7.5267 10.7889 -0.4801 18 1 5.9378 9.4678 -1.7493 19 6 5.2038 4.7367 -1.5564 20 6 5.0400 5.1070 -3.0319 21 6 6.6924 4.6760 -1.2081 22 6 2.6277 3.4042 1.2028 23 6 2.1627 2.1051 1.1953 24 6 1.8025 1.4279 2.4924 25 6 2.9967 0.6116 2.9905 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.2469 1.4991 -2.1261 32 1 3.0781 3.8138 -2.1362 33 1 5.5496 7.3521 -1.6305 34 1 4.2597 7.8126 -0.4936 35 1 8.0602 9.3647 1.7990 36 1 4.7479 3.7637 -1.3732 37 1 5.4960 6.0799 -3.2151 38 1 5.5274 4.3544 -3.6516 39 1 3.9795 5.1502 -3.2800 40 1 6.8091 4.4122 -0.1570 41 1 7.1801 3.9233 -1.8276 42 1 7.1483 5.6489 -1.3913 43 1 2.7333 3.9358 2.1369 44 1 0.9512 0.7662 2.3326 45 1 1.5422 2.1816 3.2356 46 1 2.7360 0.1214 3.9285 47 1 3.2570 -0.1421 2.2472 48 1 3.8479 1.2734 3.1503 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319812857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:09 Heat of formation + Delta-G solvation = -25.565118 kcal Electronic energy + Delta-G solvation = -25684.222399 eV Core-core repulsion = 22317.564806 eV Total energy + Delta-G solvation = -3366.657593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30006 -38.70219 -36.07125 -34.69211 -33.49778 -32.70130 -31.01428 -29.96999 -29.52227 -27.71432 -26.75015 -24.75965 -23.86320 -22.36767 -21.77603 -21.56337 -20.34832 -18.41248 -16.88434 -16.77978 -16.22570 -15.81125 -15.28629 -14.65448 -14.43441 -14.08983 -13.85861 -13.76705 -13.64891 -13.40641 -13.34640 -13.18694 -12.59502 -12.55239 -12.49714 -12.40821 -11.94501 -11.86875 -11.70287 -11.60867 -11.42885 -11.36805 -11.18014 -10.95621 -10.87093 -10.77370 -10.63169 -10.50154 -10.25883 -10.10166 -9.45443 -9.08694 -8.73014 -8.56087 -8.40449 -7.69954 -6.05928 -4.03460 1.15617 1.43989 3.29165 3.30224 3.36108 3.38641 3.68482 4.01298 4.41690 4.60848 4.71284 4.80163 4.87271 4.95944 5.15116 5.18590 5.21208 5.27694 5.28350 5.31775 5.42667 5.49242 5.51754 5.56139 5.66266 5.67469 5.70006 5.82452 5.88701 5.95758 5.98490 6.02810 6.08110 6.15120 6.20732 6.27406 6.31494 6.42492 6.54907 6.57760 6.64861 6.80333 6.96679 7.01552 7.03108 7.38508 7.63867 8.27239 8.49970 8.93696 9.00295 9.54589 11.07256 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.003981 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.899605 B = 7031.473040 C = 7524.099074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.071 4.071 4 C -0.124 4.124 5 C -0.099 4.099 6 C -0.112 4.112 7 C 0.549 3.451 8 O -0.537 6.537 9 N -0.579 5.579 10 C 0.215 3.785 11 C -0.521 4.521 12 H 0.077 0.923 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.873 3.127 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.119 3.881 20 C -0.165 4.165 21 C -0.152 4.152 22 C -0.066 4.066 23 C -0.086 4.086 24 C -0.087 4.087 25 C -0.148 4.148 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 -18.705 -6.417 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.117 4.117 6 C -0.115 4.115 7 C 0.336 3.664 8 O -0.415 6.415 9 N -0.309 5.309 10 C 0.095 3.905 11 C -0.560 4.560 12 H 0.095 0.905 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.191 1.191 19 C 0.015 3.985 20 C -0.223 4.223 21 C -0.210 4.210 22 C -0.084 4.084 23 C -0.086 4.086 24 C -0.124 4.124 25 C -0.206 4.206 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.147 0.853 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.431 -18.089 -5.992 21.723 hybrid contribution 0.071 1.011 -0.507 1.134 sum -10.360 -17.077 -6.499 21.004 Atomic orbital electron populations 1.21764 0.94808 1.01519 1.02400 1.20609 0.96148 0.92827 1.02931 1.19808 0.98703 0.95962 0.92613 1.20887 1.00855 0.94980 0.97440 1.21418 0.98206 0.94524 0.97547 1.20130 1.02094 0.94975 0.94317 1.18239 0.80961 0.87244 0.79974 1.90755 1.57994 1.50283 1.42446 1.47935 1.26870 1.12482 1.43623 1.19646 0.94890 0.78400 0.97568 1.21328 1.20881 0.98261 1.15513 0.90539 1.24838 0.94780 0.98327 0.95045 1.69895 1.27032 1.26061 1.30661 0.86906 0.78177 0.83532 0.81418 1.19961 1.21139 1.19114 1.21406 0.94916 0.92271 0.89947 1.22227 1.01415 1.02664 0.95967 1.22077 0.94367 1.02910 1.01661 1.21072 0.96025 0.93744 0.97591 1.19627 1.00309 0.93878 0.94775 1.20586 0.98635 0.99277 0.93897 1.21775 0.98178 0.99984 1.00623 0.92353 0.92523 0.92519 0.91154 0.90586 0.85874 0.85141 0.95072 0.94626 0.92644 0.89083 0.91639 0.91833 0.92892 0.92159 0.93288 0.90425 0.85318 0.90737 0.90929 0.92464 0.92536 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.72 37.16 0.36 -0.76 16 2 C -0.09 -0.73 5.38 -27.88 -0.15 -0.88 16 3 C -0.07 -0.80 5.14 -104.53 -0.54 -1.33 16 4 C -0.12 -1.43 9.66 -39.64 -0.38 -1.81 16 5 C -0.10 -1.37 7.31 -39.19 -0.29 -1.66 16 6 C -0.11 -1.94 5.09 -104.97 -0.53 -2.47 16 7 C 0.55 11.97 7.26 -12.33 -0.09 11.88 16 8 O -0.54 -13.92 16.57 5.32 0.09 -13.83 16 9 N -0.58 -12.25 2.38 -168.57 -0.40 -12.65 16 10 C 0.22 5.30 3.52 -5.19 -0.02 5.28 16 11 C -0.52 -14.82 8.41 -34.44 -0.29 -15.11 16 12 H 0.08 2.38 7.75 -52.49 -0.41 1.98 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 15 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 16 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 19 C 0.12 1.98 2.42 -67.93 -0.16 1.81 16 20 C -0.16 -2.28 8.82 37.16 0.33 -1.96 16 21 C -0.15 -2.66 8.33 37.16 0.31 -2.35 16 22 C -0.07 -1.05 9.33 -39.19 -0.37 -1.41 16 23 C -0.09 -1.09 5.13 -104.68 -0.54 -1.63 16 24 C -0.09 -0.88 5.37 -27.89 -0.15 -1.03 16 25 C -0.15 -1.39 9.71 37.16 0.36 -1.03 16 26 H 0.06 0.47 6.78 -51.93 -0.35 0.11 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 30 H 0.08 0.59 5.57 -51.93 -0.29 0.30 16 31 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.13 1.67 5.27 -52.49 -0.28 1.40 16 33 H 0.03 0.73 5.79 -51.93 -0.30 0.43 16 34 H 0.04 0.95 6.81 -51.93 -0.35 0.59 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.09 1.37 4.30 -51.92 -0.22 1.15 16 37 H 0.06 1.00 6.94 -51.93 -0.36 0.64 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.68 7.05 -51.93 -0.37 0.32 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 43 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 44 H 0.07 0.64 5.61 -51.93 -0.29 0.35 16 45 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.49 6.76 -51.93 -0.35 0.14 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -33.30 370.05 -8.60 -41.90 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.73 Total: 1.30 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.24 Total: -12.47 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.37 Total: -39.49 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.30 -8.60 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319812857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.339 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds