Wall clock time and date at job start Tue Mar 31 2020 08:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.46746 * 2 1 4 4 C 1.38384 * 119.85531 * 265.24548 * 3 2 1 5 5 C 1.37933 * 120.14363 * 180.29360 * 4 3 2 6 6 C 1.39596 * 119.85495 * 359.73458 * 5 4 3 7 7 C 1.47840 * 120.14526 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99993 * 133.25800 * 7 6 5 9 9 N 1.34774 * 120.00201 * 313.25172 * 7 6 5 10 10 C 1.46505 * 119.99961 * 182.59984 * 9 7 6 11 11 C 1.50703 * 109.46983 * 90.00804 * 10 9 7 12 12 H 1.07997 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00110 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00133 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99875 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47095 * 90.00123 * 15 13 11 17 17 H 1.48501 * 109.47188 * 210.00097 * 15 13 11 18 18 H 1.48506 * 109.47340 * 329.99870 * 15 13 11 19 19 C 1.46493 * 120.00089 * 2.60706 * 9 7 6 20 20 C 1.53004 * 109.47587 * 113.37104 * 19 9 7 21 21 C 1.52999 * 109.47424 * 233.37552 * 19 9 7 22 22 C 1.39558 * 119.71022 * 359.97438 * 6 5 4 23 23 C 1.37976 * 119.85516 * 0.02562 * 22 6 5 24 24 C 1.50696 * 119.93229 * 179.97438 * 23 22 6 25 25 C 1.52995 * 109.47454 * 265.00209 * 24 23 22 26 26 H 1.08994 * 109.47362 * 299.99810 * 1 2 3 27 27 H 1.08999 * 109.47227 * 60.00505 * 1 2 3 28 28 H 1.09007 * 109.46534 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47641 * 240.00213 * 2 1 3 30 30 H 1.08998 * 109.47676 * 119.99782 * 2 1 3 31 31 H 1.08003 * 119.92540 * 0.03250 * 4 3 2 32 32 H 1.08000 * 120.07455 * 179.70924 * 5 4 3 33 33 H 1.09005 * 109.46971 * 210.00428 * 10 9 7 34 34 H 1.08999 * 109.47329 * 330.00321 * 10 9 7 35 35 H 0.97001 * 119.99908 * 180.02562 * 14 13 11 36 36 H 1.09009 * 109.47087 * 353.37085 * 19 9 7 37 37 H 1.08998 * 109.46523 * 60.00157 * 20 19 9 38 38 H 1.08994 * 109.46982 * 180.02562 * 20 19 9 39 39 H 1.08998 * 109.46762 * 300.00384 * 20 19 9 40 40 H 1.08999 * 109.47161 * 59.99611 * 21 19 9 41 41 H 1.09004 * 109.47438 * 179.97438 * 21 19 9 42 42 H 1.09000 * 109.46621 * 299.99713 * 21 19 9 43 43 H 1.07999 * 120.07313 * 180.02562 * 22 6 5 44 44 H 1.09004 * 109.47370 * 144.99589 * 24 23 22 45 45 H 1.09003 * 109.46829 * 25.00338 * 24 23 22 46 46 H 1.09001 * 109.47394 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.47208 * 299.99897 * 25 24 23 48 48 H 1.09000 * 109.47084 * 59.99805 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3556 2.0373 -1.1961 5 6 2.8216 3.3355 -1.2025 6 6 2.9614 4.0296 0.0006 7 6 3.4597 5.4215 0.0011 8 8 2.8877 6.2715 0.6552 9 7 4.5482 5.7478 -0.7234 10 6 5.0757 7.1139 -0.6782 11 6 6.0915 7.2236 0.4297 12 1 6.3207 6.3622 1.0393 13 6 6.7272 8.4241 0.6657 14 7 7.6133 8.5200 1.6328 15 14 6.3300 9.9143 -0.3884 16 1 5.2099 10.6710 0.2263 17 1 7.5267 10.7889 -0.4801 18 1 5.9378 9.4678 -1.7493 19 6 5.2038 4.7367 -1.5564 20 6 5.0400 5.1070 -3.0319 21 6 6.6924 4.6760 -1.2081 22 6 2.6277 3.4042 1.2028 23 6 2.1627 2.1051 1.1953 24 6 1.8025 1.4279 2.4924 25 6 2.9967 0.6116 2.9905 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.2469 1.4991 -2.1261 32 1 3.0781 3.8138 -2.1362 33 1 5.5496 7.3521 -1.6305 34 1 4.2597 7.8126 -0.4936 35 1 8.0602 9.3647 1.7990 36 1 4.7479 3.7637 -1.3732 37 1 5.4960 6.0799 -3.2151 38 1 5.5274 4.3544 -3.6516 39 1 3.9795 5.1502 -3.2800 40 1 6.8091 4.4122 -0.1570 41 1 7.1801 3.9233 -1.8276 42 1 7.1483 5.6489 -1.3913 43 1 2.7333 3.9358 2.1369 44 1 0.9512 0.7662 2.3326 45 1 1.5422 2.1816 3.2356 46 1 2.7360 0.1214 3.9285 47 1 3.2570 -0.1421 2.2472 48 1 3.8479 1.2734 3.1503 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319812857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:08 Heat of formation + Delta-G solvation = -44.902244 kcal Electronic energy + Delta-G solvation = -25685.060920 eV Core-core repulsion = 22317.564806 eV Total energy + Delta-G solvation = -3367.496114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61905 -40.03481 -37.72846 -35.75704 -34.79898 -34.32438 -32.67762 -31.10358 -30.67694 -29.36303 -28.03030 -25.82374 -25.07352 -23.93572 -23.12285 -22.48272 -21.55008 -19.90704 -19.10465 -18.22093 -17.41428 -16.93406 -16.76707 -16.19573 -15.91935 -15.43629 -15.10555 -14.82140 -14.77662 -14.57610 -14.55703 -14.39973 -14.14507 -13.85548 -13.68257 -13.46081 -13.34971 -13.17385 -12.99663 -12.79953 -12.67652 -12.61648 -12.38763 -12.33121 -12.11132 -12.02414 -11.95690 -11.71233 -11.65880 -11.59597 -11.41994 -10.83129 -10.75967 -9.82914 -9.54861 -9.40850 -8.33714 -6.37088 0.01535 0.38064 1.29236 1.33800 1.41605 1.73992 2.21122 2.29374 2.75058 2.99786 3.51137 3.75105 3.86351 3.91157 3.95825 4.13947 4.21598 4.22788 4.40057 4.43906 4.47846 4.56385 4.56595 4.60311 4.67624 4.77168 4.81617 4.82667 4.85968 4.92937 4.98479 5.02489 5.04676 5.06449 5.11704 5.14518 5.24286 5.34947 5.37094 5.39289 5.43317 5.49213 5.52246 5.53374 5.64541 5.69089 5.99574 6.24238 6.61731 6.63803 7.17921 7.32264 8.83114 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.003981 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.899605 B = 7031.473040 C = 7524.099074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.060 4.060 4 C -0.112 4.112 5 C -0.097 4.097 6 C -0.141 4.141 7 C 0.539 3.461 8 O -0.597 6.597 9 N -0.583 5.583 10 C 0.226 3.774 11 C -0.523 4.523 12 H 0.029 0.971 13 C 0.012 3.988 14 N -0.945 5.945 15 Si 0.942 3.058 16 H -0.279 1.279 17 H -0.273 1.273 18 H -0.238 1.238 19 C 0.112 3.888 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.091 4.091 23 C -0.085 4.085 24 C -0.087 4.087 25 C -0.146 4.146 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.052 0.948 34 H 0.014 0.986 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.600 -21.840 -9.852 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.060 4.060 4 C -0.129 4.129 5 C -0.115 4.115 6 C -0.144 4.144 7 C 0.329 3.671 8 O -0.479 6.479 9 N -0.312 5.312 10 C 0.104 3.896 11 C -0.561 4.561 12 H 0.048 0.952 13 C -0.186 4.186 14 N -0.585 5.585 15 Si 0.765 3.235 16 H -0.204 1.204 17 H -0.198 1.198 18 H -0.162 1.162 19 C 0.010 3.990 20 C -0.216 4.216 21 C -0.204 4.204 22 C -0.110 4.110 23 C -0.085 4.085 24 C -0.124 4.124 25 C -0.203 4.203 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.182 0.818 32 H 0.163 0.837 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.729 -21.273 -9.464 26.071 hybrid contribution 0.470 1.814 0.659 1.987 sum -11.259 -19.459 -8.804 24.144 Atomic orbital electron populations 1.21768 0.94031 1.02708 1.01967 1.20718 0.96616 0.90432 1.04564 1.20284 0.96547 0.97457 0.91737 1.21332 0.98658 0.93790 0.99161 1.21548 0.98170 0.95408 0.96352 1.19845 1.05193 0.92886 0.96429 1.19088 0.80539 0.88869 0.78632 1.90692 1.59965 1.52460 1.44809 1.48054 1.26825 1.12135 1.44174 1.19294 0.93018 0.80522 0.96761 1.21462 1.21712 0.96927 1.16032 0.95225 1.25783 0.94464 1.01803 0.96518 1.70046 1.28497 1.27203 1.32775 0.85804 0.78030 0.79030 0.80668 1.20439 1.19831 1.16157 1.21796 0.93764 0.92149 0.91281 1.22198 1.02701 1.03066 0.93628 1.22016 0.95523 1.02511 1.00379 1.21014 0.98180 0.95510 0.96275 1.19867 0.99290 0.92461 0.96866 1.20657 0.99825 0.99376 0.92512 1.21760 0.96872 0.99678 1.01959 0.93150 0.92703 0.90559 0.88935 0.89662 0.81759 0.83739 0.92982 0.96780 0.92355 0.86917 0.93126 0.87912 0.91602 0.95620 0.88912 0.93323 0.88301 0.88304 0.91980 0.90659 0.91232 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.72 71.98 0.70 -0.90 16 2 C -0.09 -1.02 5.38 29.85 0.16 -0.86 16 3 C -0.06 -1.16 5.14 -19.80 -0.10 -1.26 16 4 C -0.11 -2.13 9.66 22.23 0.21 -1.91 16 5 C -0.10 -2.49 7.31 22.53 0.16 -2.32 16 6 C -0.14 -5.01 5.09 -20.09 -0.10 -5.12 16 7 C 0.54 24.96 7.26 86.79 0.63 25.59 16 8 O -0.60 -33.51 16.57 -3.89 -0.06 -33.57 16 9 N -0.58 -25.59 2.38 -805.52 -1.92 -27.51 16 10 C 0.23 11.53 3.52 85.63 0.30 11.83 16 11 C -0.52 -31.53 8.41 25.60 0.22 -31.32 16 12 H 0.03 2.01 7.75 -2.91 -0.02 1.98 16 13 C 0.01 0.73 5.47 84.65 0.46 1.19 16 14 N -0.94 -60.89 13.96 21.45 0.30 -60.59 16 15 Si 0.94 45.65 27.47 68.60 1.88 47.54 16 16 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 19 C 0.11 3.65 2.42 44.99 0.11 3.76 16 20 C -0.16 -3.90 8.82 71.98 0.63 -3.27 16 21 C -0.15 -5.15 8.33 71.98 0.60 -4.55 16 22 C -0.09 -3.08 9.33 22.53 0.21 -2.87 16 23 C -0.08 -2.09 5.13 -19.90 -0.10 -2.19 16 24 C -0.09 -1.68 5.37 29.85 0.16 -1.52 16 25 C -0.15 -2.55 9.71 71.98 0.70 -1.85 16 26 H 0.05 0.63 6.78 -2.39 -0.02 0.62 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.09 0.78 8.05 -2.39 -0.02 0.76 16 30 H 0.08 0.91 5.57 -2.39 -0.01 0.90 16 31 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.15 3.25 5.27 -2.91 -0.02 3.24 16 33 H 0.05 2.43 5.79 -2.38 -0.01 2.42 16 34 H 0.01 0.78 6.81 -2.39 -0.02 0.77 16 35 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 36 H 0.11 3.21 4.30 -2.38 -0.01 3.20 16 37 H 0.05 1.41 6.94 -2.39 -0.02 1.40 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.47 7.05 -2.39 -0.02 1.46 16 40 H 0.02 1.04 7.93 -2.39 -0.02 1.02 16 41 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.05 1.97 6.92 -2.39 -0.02 1.96 16 43 H 0.10 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.10 1.44 5.61 -2.39 -0.01 1.43 16 45 H 0.06 1.32 8.05 -2.39 -0.02 1.31 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.03 6.76 -2.39 -0.02 1.01 16 48 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -80.96 370.05 6.04 -74.92 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.89 Total: 16.79 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.96 Total: -17.57 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.62 Total: -88.10 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.06 Total: -33.57 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.54 kcal Total: -80.96 6.04 -74.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319812857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.018 kcal (2) G-P(sol) polarization free energy of solvation -80.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds