Wall clock time and date at job start Tue Mar 31 2020 08:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47032 * 59.99881 * 3 2 1 5 5 C 1.52997 * 109.47319 * 299.99786 * 3 2 1 6 6 C 1.53001 * 109.47449 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46665 * 60.00394 * 6 5 3 8 8 N 1.46500 * 109.47148 * 180.02562 * 7 6 5 9 9 C 1.39793 * 119.99692 * 274.99936 * 8 7 6 10 10 C 1.38947 * 120.00346 * 359.72566 * 9 8 7 11 11 C 1.38015 * 119.98846 * 179.72412 * 10 9 8 12 12 C 1.38898 * 120.00469 * 0.54570 * 11 10 9 13 13 O 1.35803 * 119.99338 * 179.70262 * 12 11 10 14 14 C 1.34813 * 116.99831 * 174.48479 * 13 12 11 15 15 H 1.07991 * 120.00001 * 5.05605 * 14 13 12 16 16 C 1.38621 * 119.99684 * 185.05946 * 14 13 12 17 17 N 1.31579 * 120.00177 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46930 * 60.00132 * 18 16 14 20 20 H 1.48500 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47241 * 300.00234 * 18 16 14 22 22 C 1.38902 * 120.01369 * 359.73102 * 12 11 10 23 23 C 1.38003 * 120.00376 * 359.97438 * 22 12 11 24 24 C 1.52997 * 109.47189 * 299.99765 * 7 6 5 25 25 C 1.52998 * 109.47263 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47044 * 60.00545 * 1 2 3 27 27 H 1.09003 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47139 * 300.00072 * 1 2 3 29 29 H 1.08997 * 109.47139 * 239.99928 * 2 1 3 30 30 H 1.08997 * 109.46836 * 120.00187 * 2 1 3 31 31 H 1.09000 * 109.47553 * 60.00268 * 4 3 2 32 32 H 1.09003 * 109.47154 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47531 * 299.99534 * 4 3 2 34 34 H 1.08997 * 109.47131 * 300.00207 * 5 3 2 35 35 H 1.09008 * 109.46973 * 60.00261 * 5 3 2 36 36 H 1.08997 * 109.47483 * 300.00432 * 6 5 3 37 37 H 1.09000 * 109.46862 * 179.97438 * 6 5 3 38 38 H 1.08997 * 109.47139 * 59.99827 * 7 6 5 39 39 H 0.96992 * 120.00320 * 94.99426 * 8 7 6 40 40 H 1.07997 * 120.00465 * 359.97438 * 10 9 8 41 41 H 1.07996 * 119.99819 * 180.25382 * 11 10 9 42 42 H 0.97003 * 120.00199 * 179.97438 * 17 16 14 43 43 H 1.07999 * 119.99799 * 179.97438 * 22 12 11 44 44 H 1.08001 * 120.00122 * 179.97438 * 23 22 12 45 45 H 1.08997 * 109.47131 * 300.00067 * 24 7 6 46 46 H 1.09005 * 109.47550 * 180.02562 * 24 7 6 47 47 H 1.08997 * 109.47472 * 300.00125 * 25 3 2 48 48 H 1.09007 * 109.47239 * 60.00321 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 2.0395 3.6064 -1.2489 7 6 3.5695 3.6069 -1.2487 8 7 4.0574 4.9882 -1.2478 9 6 4.1909 5.6831 -2.4534 10 6 3.8663 5.0617 -3.6531 11 6 3.9928 5.7499 -4.8427 12 6 4.4553 7.0596 -4.8417 13 8 4.5855 7.7345 -6.0130 14 6 4.9292 9.0357 -5.9346 15 1 5.1674 9.4745 -4.9770 16 6 4.9768 9.8104 -7.0832 17 7 4.6870 9.2756 -8.2499 18 14 5.4525 11.6135 -6.9745 19 1 6.8190 11.7315 -6.4053 20 1 5.4288 12.2143 -8.3324 21 1 4.4884 12.3279 -6.0997 22 6 4.7854 7.6790 -3.6430 23 6 4.6533 6.9934 -2.4527 24 6 4.0795 2.8857 0.0006 25 6 3.5700 1.4425 0.0006 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 1.6499 2.1393 32 1 1.8929 3.1915 1.2490 33 1 0.4399 2.1638 1.2492 34 1 1.8934 1.6499 -2.1392 35 1 0.4400 2.1637 -1.2492 36 1 1.6759 4.1200 -0.3590 37 1 1.6765 4.1200 -2.1392 38 1 3.9332 3.0933 -2.1386 39 1 4.2878 5.4207 -0.4107 40 1 3.5112 4.0418 -3.6543 41 1 3.7366 5.2685 -5.7749 42 1 4.7200 9.8177 -9.0536 43 1 5.1454 8.6972 -3.6426 44 1 4.9103 7.4749 -1.5208 45 1 3.7159 3.3993 0.8905 46 1 5.1696 2.8863 0.0010 47 1 3.9330 0.9288 0.8908 48 1 3.9337 0.9285 -0.8892 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323331678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:09 Heat of formation + Delta-G solvation = -24.920132 kcal Electronic energy + Delta-G solvation = -24696.328011 eV Core-core repulsion = 21329.698387 eV Total energy + Delta-G solvation = -3366.629625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.15957 -38.85103 -37.03403 -35.07374 -32.59475 -31.87244 -31.00268 -30.13923 -29.26055 -27.52183 -26.31528 -25.03239 -23.81453 -22.61942 -22.09879 -20.85674 -20.27960 -18.52512 -17.73868 -17.04171 -16.27311 -15.84415 -15.41422 -15.05234 -14.54604 -14.38336 -14.09553 -13.88075 -13.67797 -13.53263 -13.37894 -13.02696 -12.70844 -12.44663 -12.40805 -12.32833 -12.21097 -12.03324 -11.78124 -11.53015 -11.48766 -11.34757 -11.19657 -11.12044 -10.92975 -10.76716 -10.57156 -10.38550 -10.29998 -10.21209 -10.08248 -9.19945 -9.10260 -8.39637 -8.12490 -6.34453 -6.28883 -3.86353 2.24674 2.62474 3.20521 3.21767 3.24201 3.82860 4.08684 4.40049 4.48367 4.58647 4.72074 4.79828 5.02496 5.09347 5.12653 5.16818 5.23260 5.27479 5.32449 5.39385 5.42827 5.48290 5.53684 5.59916 5.69271 5.71580 5.73280 5.75640 5.80718 5.83179 5.85790 5.96374 6.00115 6.05840 6.10259 6.17749 6.26540 6.29297 6.34091 6.44834 6.60726 6.91077 6.96956 7.18939 7.35745 7.49928 7.69454 8.05153 8.15320 8.31648 9.16681 9.91889 10.89580 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.035774 B = 0.002490 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.493574 B =11243.185379 C =11592.971265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.061 4.061 4 C -0.146 4.146 5 C -0.108 4.108 6 C -0.137 4.137 7 C 0.162 3.838 8 N -0.756 5.756 9 C 0.127 3.873 10 C -0.146 4.146 11 C -0.150 4.150 12 C 0.112 3.888 13 O -0.189 6.189 14 C -0.386 4.386 15 H 0.087 0.913 16 C 0.036 3.964 17 N -0.870 5.870 18 Si 0.937 3.063 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.272 1.272 22 C -0.190 4.190 23 C -0.144 4.144 24 C -0.126 4.126 25 C -0.104 4.104 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.388 0.612 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.267 0.733 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 -15.841 18.619 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.061 4.061 4 C -0.203 4.203 5 C -0.146 4.146 6 C -0.176 4.176 7 C 0.056 3.944 8 N -0.390 5.390 9 C 0.029 3.971 10 C -0.169 4.169 11 C -0.170 4.170 12 C 0.060 3.940 13 O -0.094 6.094 14 C -0.463 4.463 15 H 0.104 0.896 16 C -0.167 4.167 17 N -0.507 5.507 18 Si 0.762 3.238 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.210 4.210 23 C -0.166 4.166 24 C -0.164 4.164 25 C -0.142 4.142 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.221 0.779 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.077 0.923 43 H 0.144 0.856 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.354 -15.984 18.051 24.698 hybrid contribution 0.325 1.152 0.439 1.275 sum -5.029 -14.831 18.489 24.230 Atomic orbital electron populations 1.21895 0.96030 1.01291 1.02171 1.21561 0.95918 0.95882 1.01714 1.20562 0.94941 0.94847 0.95743 1.22019 1.00963 1.00689 0.96639 1.21627 1.00429 0.95496 0.97044 1.22113 0.96589 0.96280 1.02622 1.20677 0.92713 0.83088 0.97939 1.44309 1.76407 1.12793 1.05482 1.17398 1.02005 0.91784 0.85879 1.20205 1.06798 0.99063 0.90789 1.20031 1.05997 0.93411 0.97586 1.19238 0.95891 0.92257 0.86638 1.83987 1.77585 1.23456 1.24399 1.21177 1.46784 0.83081 0.95272 0.89556 1.25205 0.97323 0.99793 0.94389 1.70039 1.46109 1.36489 0.98029 0.85845 0.79109 0.81080 0.77721 1.19708 1.20442 1.19705 1.20981 1.07059 1.01180 0.91755 1.20229 1.05709 0.93337 0.97353 1.21823 1.00622 0.95843 0.98157 1.21538 0.94566 0.96149 1.01939 0.92307 0.93171 0.92517 0.92055 0.92258 0.93107 0.91996 0.92578 0.91981 0.91701 0.91782 0.91458 0.90996 0.77862 0.87097 0.86627 0.92289 0.85600 0.87740 0.91526 0.91666 0.91930 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.21 37.16 0.34 -0.71 16 2 C -0.11 -0.79 4.99 -26.73 -0.13 -0.92 16 3 C -0.06 -0.46 0.54 -154.52 -0.08 -0.55 16 4 C -0.15 -1.09 7.42 37.16 0.28 -0.81 16 5 C -0.11 -0.96 4.38 -26.73 -0.12 -1.08 16 6 C -0.14 -1.47 5.18 -26.73 -0.14 -1.61 16 7 C 0.16 1.82 2.15 -67.93 -0.15 1.67 16 8 N -0.76 -10.11 5.25 -52.12 -0.27 -10.39 16 9 C 0.13 2.21 6.64 -83.70 -0.56 1.66 16 10 C -0.15 -2.69 8.86 -39.40 -0.35 -3.04 16 11 C -0.15 -3.27 9.98 -39.42 -0.39 -3.66 16 12 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 13 O -0.19 -5.57 9.76 -0.07 0.00 -5.57 16 14 C -0.39 -11.13 9.48 30.87 0.29 -10.83 16 15 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 16 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 17 N -0.87 -26.30 13.67 55.48 0.76 -25.54 16 18 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.19 -4.24 9.16 -39.42 -0.36 -4.60 16 23 C -0.14 -2.70 9.89 -39.40 -0.39 -3.09 16 24 C -0.13 -1.13 5.12 -26.71 -0.14 -1.27 16 25 C -0.10 -0.81 4.74 -26.71 -0.13 -0.94 16 26 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 33 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.56 6.43 -51.92 -0.33 0.23 16 36 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 37 H 0.07 0.87 7.74 -51.93 -0.40 0.46 16 38 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 39 H 0.39 4.60 8.61 -40.82 -0.35 4.25 16 40 H 0.11 1.77 6.13 -52.49 -0.32 1.45 16 41 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.13 2.81 5.63 -52.49 -0.30 2.52 16 44 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -30.91 362.15 -9.05 -39.96 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.59 Total: 6.28 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.38 Total: -26.33 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.48 Total: -35.93 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: 0.00 Total: -5.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.91 -9.05 -39.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323331678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.039 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds