Wall clock time and date at job start Tue Mar 31 2020 08:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47032 * 59.99881 * 3 2 1 5 5 C 1.52997 * 109.47319 * 299.99786 * 3 2 1 6 6 C 1.53001 * 109.47449 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46665 * 60.00394 * 6 5 3 8 8 N 1.46500 * 109.47148 * 180.02562 * 7 6 5 9 9 C 1.39793 * 119.99692 * 274.99936 * 8 7 6 10 10 C 1.38947 * 120.00346 * 359.72566 * 9 8 7 11 11 C 1.38015 * 119.98846 * 179.72412 * 10 9 8 12 12 C 1.38898 * 120.00469 * 0.54570 * 11 10 9 13 13 O 1.35803 * 119.99338 * 179.70262 * 12 11 10 14 14 C 1.34813 * 116.99831 * 174.48479 * 13 12 11 15 15 H 1.07991 * 120.00001 * 5.05605 * 14 13 12 16 16 C 1.38621 * 119.99684 * 185.05946 * 14 13 12 17 17 N 1.31579 * 120.00177 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46930 * 60.00132 * 18 16 14 20 20 H 1.48500 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47241 * 300.00234 * 18 16 14 22 22 C 1.38902 * 120.01369 * 359.73102 * 12 11 10 23 23 C 1.38003 * 120.00376 * 359.97438 * 22 12 11 24 24 C 1.52997 * 109.47189 * 299.99765 * 7 6 5 25 25 C 1.52998 * 109.47263 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47044 * 60.00545 * 1 2 3 27 27 H 1.09003 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47139 * 300.00072 * 1 2 3 29 29 H 1.08997 * 109.47139 * 239.99928 * 2 1 3 30 30 H 1.08997 * 109.46836 * 120.00187 * 2 1 3 31 31 H 1.09000 * 109.47553 * 60.00268 * 4 3 2 32 32 H 1.09003 * 109.47154 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47531 * 299.99534 * 4 3 2 34 34 H 1.08997 * 109.47131 * 300.00207 * 5 3 2 35 35 H 1.09008 * 109.46973 * 60.00261 * 5 3 2 36 36 H 1.08997 * 109.47483 * 300.00432 * 6 5 3 37 37 H 1.09000 * 109.46862 * 179.97438 * 6 5 3 38 38 H 1.08997 * 109.47139 * 59.99827 * 7 6 5 39 39 H 0.96992 * 120.00320 * 94.99426 * 8 7 6 40 40 H 1.07997 * 120.00465 * 359.97438 * 10 9 8 41 41 H 1.07996 * 119.99819 * 180.25382 * 11 10 9 42 42 H 0.97003 * 120.00199 * 179.97438 * 17 16 14 43 43 H 1.07999 * 119.99799 * 179.97438 * 22 12 11 44 44 H 1.08001 * 120.00122 * 179.97438 * 23 22 12 45 45 H 1.08997 * 109.47131 * 300.00067 * 24 7 6 46 46 H 1.09005 * 109.47550 * 180.02562 * 24 7 6 47 47 H 1.08997 * 109.47472 * 300.00125 * 25 3 2 48 48 H 1.09007 * 109.47239 * 60.00321 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 2.0395 3.6064 -1.2489 7 6 3.5695 3.6069 -1.2487 8 7 4.0574 4.9882 -1.2478 9 6 4.1909 5.6831 -2.4534 10 6 3.8663 5.0617 -3.6531 11 6 3.9928 5.7499 -4.8427 12 6 4.4553 7.0596 -4.8417 13 8 4.5855 7.7345 -6.0130 14 6 4.9292 9.0357 -5.9346 15 1 5.1674 9.4745 -4.9770 16 6 4.9768 9.8104 -7.0832 17 7 4.6870 9.2756 -8.2499 18 14 5.4525 11.6135 -6.9745 19 1 6.8190 11.7315 -6.4053 20 1 5.4288 12.2143 -8.3324 21 1 4.4884 12.3279 -6.0997 22 6 4.7854 7.6790 -3.6430 23 6 4.6533 6.9934 -2.4527 24 6 4.0795 2.8857 0.0006 25 6 3.5700 1.4425 0.0006 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 1.6499 2.1393 32 1 1.8929 3.1915 1.2490 33 1 0.4399 2.1638 1.2492 34 1 1.8934 1.6499 -2.1392 35 1 0.4400 2.1637 -1.2492 36 1 1.6759 4.1200 -0.3590 37 1 1.6765 4.1200 -2.1392 38 1 3.9332 3.0933 -2.1386 39 1 4.2878 5.4207 -0.4107 40 1 3.5112 4.0418 -3.6543 41 1 3.7366 5.2685 -5.7749 42 1 4.7200 9.8177 -9.0536 43 1 5.1454 8.6972 -3.6426 44 1 4.9103 7.4749 -1.5208 45 1 3.7159 3.3993 0.8905 46 1 5.1696 2.8863 0.0010 47 1 3.9330 0.9288 0.8908 48 1 3.9337 0.9285 -0.8892 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323331678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:08 Heat of formation + Delta-G solvation = -41.860211 kcal Electronic energy + Delta-G solvation = -24697.062588 eV Core-core repulsion = 21329.698387 eV Total energy + Delta-G solvation = -3367.364202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08645 -40.42040 -38.60169 -36.27539 -34.23708 -33.31262 -31.94144 -31.57733 -30.16151 -28.66669 -27.54377 -26.73691 -24.72160 -23.56113 -23.45028 -22.27126 -21.36793 -19.68107 -19.18715 -18.81442 -17.62714 -16.97629 -16.44341 -16.17832 -15.71945 -15.65429 -15.38943 -15.28501 -15.11263 -14.61392 -14.45105 -14.18056 -14.05205 -13.92413 -13.47281 -13.41828 -13.22149 -12.99597 -12.94410 -12.78685 -12.66720 -12.48929 -12.24795 -12.19541 -12.12839 -12.01786 -11.83333 -11.43519 -11.11881 -11.07761 -10.94977 -10.92856 -10.73853 -10.11051 -9.76595 -8.38611 -7.90459 -6.02267 0.59343 0.94958 1.36508 1.48016 1.52846 2.23218 2.66400 2.92154 3.26205 3.67930 3.73747 3.78360 3.92316 4.07582 4.15654 4.18020 4.26556 4.44471 4.48404 4.50241 4.52128 4.58303 4.64870 4.66730 4.73176 4.82465 4.83981 4.89650 4.99771 5.07534 5.10944 5.14492 5.16256 5.20269 5.22891 5.28103 5.30089 5.34936 5.36751 5.41951 5.46959 5.52171 5.57139 5.65182 5.74287 5.79629 6.01466 6.12053 6.66093 7.06240 7.10381 7.94347 8.85822 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.035774 B = 0.002490 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.493574 B =11243.185379 C =11592.971265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.057 4.057 4 C -0.145 4.145 5 C -0.105 4.105 6 C -0.132 4.132 7 C 0.158 3.842 8 N -0.741 5.741 9 C 0.157 3.843 10 C -0.146 4.146 11 C -0.156 4.156 12 C 0.061 3.939 13 O -0.243 6.243 14 C -0.406 4.406 15 H 0.098 0.902 16 C -0.029 4.029 17 N -0.928 5.928 18 Si 1.017 2.983 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.259 1.259 22 C -0.193 4.193 23 C -0.147 4.147 24 C -0.119 4.119 25 C -0.102 4.102 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.402 0.598 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.270 0.730 43 H 0.119 0.881 44 H 0.139 0.861 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -16.753 22.240 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.057 4.057 4 C -0.202 4.202 5 C -0.143 4.143 6 C -0.171 4.171 7 C 0.052 3.948 8 N -0.374 5.374 9 C 0.056 3.944 10 C -0.168 4.168 11 C -0.176 4.176 12 C 0.011 3.989 13 O -0.151 6.151 14 C -0.483 4.483 15 H 0.115 0.885 16 C -0.225 4.225 17 N -0.567 5.567 18 Si 0.836 3.164 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.183 1.183 22 C -0.213 4.213 23 C -0.169 4.169 24 C -0.156 4.156 25 C -0.140 4.140 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.237 0.763 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.137 0.863 44 H 0.157 0.843 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.334 -16.954 21.765 28.100 hybrid contribution 0.234 1.138 -0.405 1.230 sum -5.101 -15.816 21.361 27.064 Atomic orbital electron populations 1.21894 0.95920 1.01599 1.01992 1.21543 0.95994 0.95326 1.02029 1.20524 0.94863 0.95176 0.95103 1.22005 1.01053 1.00392 0.96743 1.21605 1.00616 0.94317 0.97783 1.22030 0.95971 0.97395 1.01659 1.20874 0.93097 0.81718 0.99078 1.44434 1.74968 1.13497 1.04537 1.17520 0.98547 0.91332 0.87050 1.20422 1.06344 1.00055 0.89966 1.20223 1.05767 0.92699 0.98898 1.19722 0.98968 0.93522 0.86650 1.83935 1.80182 1.24061 1.26939 1.21712 1.46847 0.83573 0.96153 0.88476 1.26539 0.97145 1.05201 0.93661 1.70201 1.48777 1.38736 0.99018 0.84675 0.79414 0.74108 0.78163 1.18234 1.19784 1.18296 1.21054 1.06855 1.01119 0.92238 1.20499 1.05294 0.93789 0.97342 1.21761 1.00635 0.96284 0.96969 1.21540 0.94529 0.95374 1.02559 0.92905 0.92692 0.92262 0.92252 0.91449 0.92208 0.92468 0.92536 0.92348 0.91447 0.91334 0.93809 0.91913 0.76310 0.84448 0.87133 0.92158 0.86345 0.84301 0.90482 0.91560 0.90515 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.21 71.98 0.66 -1.09 16 2 C -0.11 -1.25 4.99 30.59 0.15 -1.09 16 3 C -0.06 -0.70 0.54 -52.19 -0.03 -0.73 16 4 C -0.14 -1.69 7.42 71.98 0.53 -1.15 16 5 C -0.11 -1.64 4.38 30.59 0.13 -1.51 16 6 C -0.13 -2.52 5.18 30.59 0.16 -2.36 16 7 C 0.16 3.07 2.15 44.99 0.10 3.17 16 8 N -0.74 -17.34 5.25 -318.80 -1.67 -19.02 16 9 C 0.16 5.09 6.64 38.21 0.25 5.34 16 10 C -0.15 -5.21 8.86 22.39 0.20 -5.01 16 11 C -0.16 -7.00 9.98 22.38 0.22 -6.78 16 12 C 0.06 3.17 6.65 22.59 0.15 3.32 16 13 O -0.24 -15.25 9.76 -23.15 -0.23 -15.47 16 14 C -0.41 -24.54 9.48 67.91 0.64 -23.90 16 15 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 16 C -0.03 -1.73 5.49 84.82 0.47 -1.27 16 17 N -0.93 -58.98 13.67 21.61 0.30 -58.69 16 18 Si 1.02 44.39 29.55 68.60 2.03 46.41 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 C -0.19 -8.72 9.16 22.37 0.20 -8.51 16 23 C -0.15 -5.23 9.89 22.38 0.22 -5.01 16 24 C -0.12 -1.69 5.12 30.61 0.16 -1.54 16 25 C -0.10 -1.26 4.74 30.61 0.14 -1.11 16 26 H 0.05 0.65 6.43 -2.39 -0.02 0.63 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.63 6.43 -2.39 -0.02 0.61 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.72 4.81 -2.39 -0.01 0.71 16 33 H 0.06 0.66 6.43 -2.39 -0.02 0.65 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.04 6.43 -2.38 -0.02 1.02 16 36 H 0.07 1.27 6.43 -2.39 -0.02 1.25 16 37 H 0.04 1.05 7.74 -2.39 -0.02 1.03 16 38 H 0.06 1.39 6.47 -2.39 -0.02 1.38 16 39 H 0.40 7.81 8.61 -92.71 -0.80 7.01 16 40 H 0.14 4.15 6.13 -2.91 -0.02 4.13 16 41 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 42 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 43 H 0.12 5.42 5.63 -2.91 -0.02 5.40 16 44 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 45 H 0.08 0.98 6.43 -2.39 -0.02 0.97 16 46 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -71.54 362.15 4.96 -66.58 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.16 Total: 29.41 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 4.37 Total: -49.23 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.38 Total: -77.70 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.23 Total: -15.47 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.54 4.96 -66.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323331678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.724 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds