Wall clock time and date at job start Tue Mar 31 2020 08:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47109 * 2 1 4 4 C 1.38386 * 119.85319 * 265.25233 * 3 2 1 5 5 C 1.37928 * 120.14668 * 180.29257 * 4 3 2 6 6 C 1.39600 * 119.85418 * 359.72756 * 5 4 3 7 7 C 1.47839 * 120.14742 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00066 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00238 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00224 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47120 * 299.99986 * 11 10 9 13 13 C 1.52998 * 109.47121 * 60.00146 * 11 10 9 14 14 C 1.50695 * 109.47510 * 180.02562 * 11 10 9 15 15 H 1.08010 * 119.99852 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00677 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99538 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00638 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47285 * 89.99429 * 18 16 14 20 20 H 1.48500 * 109.47347 * 209.99876 * 18 16 14 21 21 H 1.48502 * 109.47017 * 330.00077 * 18 16 14 22 22 C 1.39563 * 119.70871 * 359.97438 * 6 5 4 23 23 C 1.37983 * 119.85110 * 0.02562 * 22 6 5 24 24 C 1.50698 * 119.92312 * 179.97438 * 23 22 6 25 25 C 1.53006 * 109.47184 * 264.99735 * 24 23 22 26 26 H 1.08998 * 109.47213 * 300.00018 * 1 2 3 27 27 H 1.09002 * 109.47516 * 60.00432 * 1 2 3 28 28 H 1.09006 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47213 * 239.99982 * 2 1 3 30 30 H 1.09002 * 109.47516 * 119.99568 * 2 1 3 31 31 H 1.08009 * 119.92624 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.07969 * 179.70905 * 5 4 3 33 33 H 0.97001 * 119.99581 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47144 * 299.99783 * 10 9 7 35 35 H 1.08996 * 109.47163 * 60.00031 * 10 9 7 36 36 H 1.09005 * 109.47082 * 60.00301 * 12 11 10 37 37 H 1.09000 * 109.46934 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47248 * 299.99862 * 12 11 10 39 39 H 1.08997 * 109.47299 * 60.00015 * 13 11 10 40 40 H 1.09000 * 109.47468 * 179.97438 * 13 11 10 41 41 H 1.09005 * 109.47258 * 299.99807 * 13 11 10 42 42 H 0.97007 * 119.99751 * 180.02562 * 17 16 14 43 43 H 1.07991 * 120.07337 * 180.02562 * 22 6 5 44 44 H 1.09001 * 109.46665 * 145.00124 * 24 23 22 45 45 H 1.08993 * 109.47304 * 24.99680 * 24 23 22 46 46 H 1.09001 * 109.46801 * 300.00442 * 25 24 23 47 47 H 1.09001 * 109.46998 * 60.00038 * 25 24 23 48 48 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3555 2.0372 -1.1961 5 6 2.8216 3.3354 -1.2027 6 6 2.9615 4.0296 0.0004 7 6 3.4598 5.4214 0.0009 8 8 3.5802 6.0235 1.0499 9 7 3.7808 6.0227 -1.1619 10 6 4.2741 7.4021 -1.1614 11 6 4.5626 7.8410 -2.5984 12 6 5.6212 6.9210 -3.2099 13 6 3.2773 7.7594 -3.4244 14 6 5.0706 9.2598 -2.5980 15 1 5.1767 9.7951 -1.6660 16 6 5.3991 9.8749 -3.7875 17 7 5.2694 9.2232 -4.9224 18 14 6.0295 11.6332 -3.7869 19 1 7.5097 11.6284 -3.6675 20 1 5.6372 12.3002 -5.0544 21 1 5.4428 12.3691 -2.6381 22 6 2.6278 3.4042 1.2026 23 6 2.1627 2.1051 1.1951 24 6 1.8024 1.4281 2.4924 25 6 2.9967 0.6116 2.9904 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2468 1.4991 -2.1262 32 1 3.0780 3.8137 -2.1364 33 1 3.6844 5.5424 -1.9990 34 1 3.5201 8.0575 -0.7254 35 1 5.1900 7.4603 -0.5734 36 1 5.2541 5.8947 -3.2103 37 1 5.8263 7.2335 -4.2338 38 1 6.5368 6.9792 -2.6215 39 1 2.5232 8.4148 -2.9888 40 1 3.4827 8.0725 -4.4481 41 1 2.9102 6.7330 -3.4248 42 1 5.5008 9.6558 -5.7593 43 1 2.7333 3.9359 2.1367 44 1 0.9512 0.7664 2.3326 45 1 1.5424 2.1818 3.2356 46 1 3.2569 -0.1420 2.2472 47 1 3.8480 1.2734 3.1501 48 1 2.7360 0.1216 3.9285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324981847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:03 Heat of formation + Delta-G solvation = -43.233579 kcal Electronic energy + Delta-G solvation = -24753.062233 eV Core-core repulsion = 21385.638477 eV Total energy + Delta-G solvation = -3367.423755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26664 -38.77556 -36.35717 -34.80342 -33.63862 -33.24287 -30.95113 -30.01260 -29.23466 -25.83945 -25.73417 -25.22093 -24.57753 -23.41484 -21.72866 -21.62109 -19.57064 -18.84395 -17.44578 -16.37666 -15.92009 -15.59494 -15.05047 -14.85615 -14.74375 -14.44730 -14.01859 -13.80756 -13.76235 -13.43562 -13.37559 -12.91195 -12.88167 -12.61958 -12.55851 -12.21331 -11.98652 -11.68737 -11.53076 -11.36732 -11.31826 -11.19332 -10.94778 -10.86784 -10.75965 -10.69651 -10.39279 -10.20553 -9.64177 -9.61927 -9.26163 -8.89813 -8.79553 -8.72730 -8.43429 -8.28457 -6.02448 -4.12428 0.88810 1.31180 3.06998 3.28407 3.35342 3.39224 3.71768 3.95051 4.40127 4.48450 4.57366 4.71206 4.77323 4.96641 5.06958 5.11477 5.16275 5.18254 5.24402 5.29421 5.40333 5.43908 5.55664 5.61413 5.69368 5.79966 5.85786 5.90889 5.99913 6.08522 6.21578 6.30116 6.32658 6.40404 6.49159 6.52344 6.77418 6.81266 6.84633 6.94318 7.01438 7.02297 7.34868 7.54990 7.69092 8.00291 8.04433 8.15136 8.38058 8.68386 8.88286 9.53398 10.99056 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029959 B = 0.002803 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.377851 B = 9987.804291 C =10547.775429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.063 4.063 4 C -0.123 4.123 5 C -0.088 4.088 6 C -0.127 4.127 7 C 0.546 3.454 8 O -0.550 6.550 9 N -0.710 5.710 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.058 4.058 23 C -0.091 4.091 24 C -0.087 4.087 25 C -0.148 4.148 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.397 0.603 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.005 0.995 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.005 0.995 42 H 0.260 0.740 43 H 0.134 0.866 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -19.776 7.942 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.130 4.130 7 C 0.332 3.668 8 O -0.430 6.430 9 N -0.361 5.361 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.077 4.077 23 C -0.092 4.092 24 C -0.124 4.124 25 C -0.206 4.206 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.234 0.766 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.024 0.976 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.105 0.895 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.152 0.848 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.680 -19.269 8.465 22.404 hybrid contribution 0.374 0.854 -0.603 1.110 sum -7.307 -18.415 7.862 21.315 Atomic orbital electron populations 1.21766 0.94620 1.01690 1.02455 1.20641 0.96299 0.92690 1.03082 1.19890 0.97774 0.96003 0.92617 1.20942 1.00614 0.94923 0.97625 1.21352 0.97394 0.94598 0.97322 1.20107 1.03754 0.94831 0.94278 1.18295 0.78241 0.85854 0.84385 1.90727 1.54763 1.66058 1.31473 1.46259 1.65043 1.16619 1.08143 1.21756 0.97788 0.78867 1.00706 1.18358 0.92965 0.95301 0.87858 1.21838 0.98089 0.94714 1.04241 1.21836 0.96890 0.95888 1.04275 1.20985 1.43468 0.96856 0.93108 0.92405 1.24879 0.95273 0.97863 0.95502 1.69806 1.48485 1.36607 0.97591 0.86564 0.79120 0.84721 0.77427 1.20708 1.21263 1.19900 1.21135 0.95186 0.93565 0.97849 1.19665 1.00682 0.93980 0.94827 1.20587 0.98703 0.99301 0.93792 1.21778 0.98094 0.99982 1.00714 0.92364 0.92391 0.92384 0.90979 0.90515 0.85590 0.85509 0.76643 0.92560 0.92563 0.97602 0.89527 0.95374 0.95374 0.89519 0.97593 0.93006 0.84849 0.90640 0.90915 0.92494 0.92334 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.72 37.15 0.36 -0.65 16 2 C -0.09 -0.67 5.37 -27.88 -0.15 -0.82 16 3 C -0.06 -0.64 5.14 -104.53 -0.54 -1.18 16 4 C -0.12 -1.33 9.66 -39.64 -0.38 -1.71 16 5 C -0.09 -1.13 9.54 -39.19 -0.37 -1.50 16 6 C -0.13 -1.92 5.87 -104.97 -0.62 -2.54 16 7 C 0.55 10.21 7.77 -12.33 -0.10 10.11 16 8 O -0.55 -12.06 16.35 5.32 0.09 -11.97 16 9 N -0.71 -13.26 4.91 -61.26 -0.30 -13.56 16 10 C 0.13 2.85 4.50 -4.05 -0.02 2.83 16 11 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 12 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 13 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 14 C -0.51 -13.32 8.01 -34.44 -0.28 -13.59 16 15 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 18 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.06 -0.80 9.22 -39.18 -0.36 -1.16 16 23 C -0.09 -1.01 5.13 -104.68 -0.54 -1.55 16 24 C -0.09 -0.74 5.38 -27.88 -0.15 -0.89 16 25 C -0.15 -1.14 9.72 37.16 0.36 -0.78 16 26 H 0.06 0.41 6.78 -51.93 -0.35 0.06 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 30 H 0.08 0.52 5.57 -51.93 -0.29 0.23 16 31 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 32 H 0.13 1.50 6.41 -52.49 -0.34 1.16 16 33 H 0.40 6.68 4.20 -40.82 -0.17 6.51 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 37 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 41 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 42 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 43 H 0.13 1.88 7.65 -52.49 -0.40 1.48 16 44 H 0.08 0.55 5.61 -51.93 -0.29 0.26 16 45 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 46 H 0.06 0.42 6.76 -51.93 -0.35 0.07 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -28.97 372.49 -9.17 -38.14 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.72 Total: 5.02 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.35 Total: -15.90 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.22 Total: -36.68 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.97 -9.17 -38.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324981847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.093 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds