Wall clock time and date at job start Tue Mar 31 2020 08:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47109 * 2 1 4 4 C 1.38386 * 119.85319 * 265.25233 * 3 2 1 5 5 C 1.37928 * 120.14668 * 180.29257 * 4 3 2 6 6 C 1.39600 * 119.85418 * 359.72756 * 5 4 3 7 7 C 1.47839 * 120.14742 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00066 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00238 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00224 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47120 * 299.99986 * 11 10 9 13 13 C 1.52998 * 109.47121 * 60.00146 * 11 10 9 14 14 C 1.50695 * 109.47510 * 180.02562 * 11 10 9 15 15 H 1.08010 * 119.99852 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00677 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99538 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00638 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47285 * 89.99429 * 18 16 14 20 20 H 1.48500 * 109.47347 * 209.99876 * 18 16 14 21 21 H 1.48502 * 109.47017 * 330.00077 * 18 16 14 22 22 C 1.39563 * 119.70871 * 359.97438 * 6 5 4 23 23 C 1.37983 * 119.85110 * 0.02562 * 22 6 5 24 24 C 1.50698 * 119.92312 * 179.97438 * 23 22 6 25 25 C 1.53006 * 109.47184 * 264.99735 * 24 23 22 26 26 H 1.08998 * 109.47213 * 300.00018 * 1 2 3 27 27 H 1.09002 * 109.47516 * 60.00432 * 1 2 3 28 28 H 1.09006 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47213 * 239.99982 * 2 1 3 30 30 H 1.09002 * 109.47516 * 119.99568 * 2 1 3 31 31 H 1.08009 * 119.92624 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.07969 * 179.70905 * 5 4 3 33 33 H 0.97001 * 119.99581 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47144 * 299.99783 * 10 9 7 35 35 H 1.08996 * 109.47163 * 60.00031 * 10 9 7 36 36 H 1.09005 * 109.47082 * 60.00301 * 12 11 10 37 37 H 1.09000 * 109.46934 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47248 * 299.99862 * 12 11 10 39 39 H 1.08997 * 109.47299 * 60.00015 * 13 11 10 40 40 H 1.09000 * 109.47468 * 179.97438 * 13 11 10 41 41 H 1.09005 * 109.47258 * 299.99807 * 13 11 10 42 42 H 0.97007 * 119.99751 * 180.02562 * 17 16 14 43 43 H 1.07991 * 120.07337 * 180.02562 * 22 6 5 44 44 H 1.09001 * 109.46665 * 145.00124 * 24 23 22 45 45 H 1.08993 * 109.47304 * 24.99680 * 24 23 22 46 46 H 1.09001 * 109.46801 * 300.00442 * 25 24 23 47 47 H 1.09001 * 109.46998 * 60.00038 * 25 24 23 48 48 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3555 2.0372 -1.1961 5 6 2.8216 3.3354 -1.2027 6 6 2.9615 4.0296 0.0004 7 6 3.4598 5.4214 0.0009 8 8 3.5802 6.0235 1.0499 9 7 3.7808 6.0227 -1.1619 10 6 4.2741 7.4021 -1.1614 11 6 4.5626 7.8410 -2.5984 12 6 5.6212 6.9210 -3.2099 13 6 3.2773 7.7594 -3.4244 14 6 5.0706 9.2598 -2.5980 15 1 5.1767 9.7951 -1.6660 16 6 5.3991 9.8749 -3.7875 17 7 5.2694 9.2232 -4.9224 18 14 6.0295 11.6332 -3.7869 19 1 7.5097 11.6284 -3.6675 20 1 5.6372 12.3002 -5.0544 21 1 5.4428 12.3691 -2.6381 22 6 2.6278 3.4042 1.2026 23 6 2.1627 2.1051 1.1951 24 6 1.8024 1.4281 2.4924 25 6 2.9967 0.6116 2.9904 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2468 1.4991 -2.1262 32 1 3.0780 3.8137 -2.1364 33 1 3.6844 5.5424 -1.9990 34 1 3.5201 8.0575 -0.7254 35 1 5.1900 7.4603 -0.5734 36 1 5.2541 5.8947 -3.2103 37 1 5.8263 7.2335 -4.2338 38 1 6.5368 6.9792 -2.6215 39 1 2.5232 8.4148 -2.9888 40 1 3.4827 8.0725 -4.4481 41 1 2.9102 6.7330 -3.4248 42 1 5.5008 9.6558 -5.7593 43 1 2.7333 3.9359 2.1367 44 1 0.9512 0.7664 2.3326 45 1 1.5424 2.1818 3.2356 46 1 3.2569 -0.1420 2.2472 47 1 3.8480 1.2734 3.1501 48 1 2.7360 0.1216 3.9285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324981847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:02 Heat of formation + Delta-G solvation = -57.104740 kcal Electronic energy + Delta-G solvation = -24753.663731 eV Core-core repulsion = 21385.638477 eV Total energy + Delta-G solvation = -3368.025254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41556 -40.05834 -38.14106 -35.74231 -34.97803 -34.31612 -32.77748 -30.87386 -30.16935 -27.59626 -27.53695 -26.95161 -25.50141 -24.38840 -22.75620 -22.47719 -20.81343 -20.66563 -18.76176 -17.82551 -17.34907 -16.71766 -16.43246 -16.33866 -16.29882 -15.65691 -14.88595 -14.85730 -14.74494 -14.59368 -14.53668 -14.41760 -14.12026 -14.01106 -13.46461 -13.23887 -13.19924 -13.12634 -12.76726 -12.71892 -12.61566 -12.48919 -12.27440 -12.15315 -12.10870 -12.02481 -11.68991 -11.52001 -11.44313 -11.33371 -10.93929 -10.72259 -10.41887 -10.09491 -9.81671 -9.55385 -8.03974 -6.19788 -0.15339 0.38489 1.41807 1.44511 1.52908 1.83355 2.23322 2.47643 2.83531 3.19639 3.66522 3.72895 3.87176 3.96763 4.14059 4.22022 4.34168 4.45652 4.46576 4.49145 4.55238 4.55853 4.61012 4.67371 4.78862 4.87730 4.94865 5.01702 5.02662 5.07478 5.07766 5.11113 5.13073 5.15859 5.24279 5.30449 5.35478 5.36518 5.47810 5.51343 5.53475 5.64189 5.65508 5.66696 5.96701 6.11864 6.18101 6.41081 6.58781 6.83625 7.20485 7.47884 8.95230 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029959 B = 0.002803 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.377851 B = 9987.804291 C =10547.775429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.053 4.053 4 C -0.121 4.121 5 C -0.091 4.091 6 C -0.152 4.152 7 C 0.545 3.455 8 O -0.592 6.592 9 N -0.704 5.704 10 C 0.147 3.853 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.530 4.530 15 H 0.044 0.956 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.946 3.054 19 H -0.279 1.279 20 H -0.281 1.281 21 H -0.277 1.277 22 C -0.073 4.073 23 C -0.091 4.091 24 C -0.086 4.086 25 C -0.146 4.146 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.408 0.592 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.035 0.965 37 H 0.065 0.935 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.261 0.739 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -22.649 7.485 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.054 4.054 4 C -0.139 4.139 5 C -0.109 4.109 6 C -0.155 4.155 7 C 0.334 3.666 8 O -0.475 6.475 9 N -0.355 5.355 10 C 0.023 3.977 11 C 0.052 3.948 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.569 4.569 15 H 0.062 0.938 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.773 3.227 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.202 1.202 22 C -0.092 4.092 23 C -0.091 4.091 24 C -0.123 4.123 25 C -0.204 4.204 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.153 0.847 33 H 0.246 0.754 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.136 0.864 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.643 -22.165 7.988 25.095 hybrid contribution 0.629 1.647 -0.427 1.814 sum -8.014 -20.517 7.561 23.289 Atomic orbital electron populations 1.21766 0.93907 1.02753 1.02047 1.20737 0.96730 0.90627 1.04483 1.20318 0.95787 0.97336 0.91919 1.21299 0.99352 0.94080 0.99152 1.21480 0.97430 0.95476 0.96545 1.19865 1.06593 0.93073 0.96011 1.18890 0.77129 0.87152 0.83451 1.90693 1.56531 1.67434 1.32801 1.46056 1.65089 1.15414 1.08928 1.21339 0.96603 0.80419 0.99351 1.18350 0.93465 0.94262 0.88745 1.21684 0.97570 0.96184 1.02471 1.21683 0.96257 0.97461 1.02519 1.21258 1.44275 0.98555 0.92793 0.93774 1.25449 0.95482 1.00854 0.95298 1.69902 1.48539 1.37533 0.97749 0.85743 0.78549 0.81109 0.77311 1.20451 1.20668 1.20169 1.21159 0.96302 0.94879 0.96884 1.19935 0.99663 0.92906 0.96602 1.20658 0.99718 0.99510 0.92435 1.21769 0.97062 0.99713 1.01813 0.92743 0.92902 0.90630 0.89442 0.89364 0.82655 0.84683 0.75392 0.94242 0.94226 0.94617 0.91584 0.96288 0.96281 0.91576 0.94605 0.92939 0.86369 0.88700 0.91225 0.91752 0.93939 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.72 71.98 0.70 -0.76 16 2 C -0.09 -0.96 5.37 29.85 0.16 -0.80 16 3 C -0.05 -0.93 5.14 -19.80 -0.10 -1.03 16 4 C -0.12 -2.25 9.66 22.23 0.21 -2.03 16 5 C -0.09 -2.17 9.54 22.53 0.21 -1.96 16 6 C -0.15 -4.63 5.87 -20.09 -0.12 -4.75 16 7 C 0.54 20.92 7.77 86.78 0.67 21.59 16 8 O -0.59 -27.18 16.35 -3.89 -0.06 -27.25 16 9 N -0.70 -26.45 4.91 -465.99 -2.29 -28.74 16 10 C 0.15 6.55 4.50 86.38 0.39 6.94 16 11 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 12 C -0.12 -5.49 8.08 71.98 0.58 -4.90 16 13 C -0.12 -5.49 8.08 71.98 0.58 -4.91 16 14 C -0.53 -28.52 8.01 25.60 0.21 -28.31 16 15 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 16 C 0.03 1.54 5.15 84.65 0.44 1.98 16 17 N -0.90 -48.08 9.35 21.45 0.20 -47.88 16 18 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.07 -2.03 9.22 22.53 0.21 -1.82 16 23 C -0.09 -1.87 5.13 -19.90 -0.10 -1.98 16 24 C -0.09 -1.30 5.38 29.85 0.16 -1.14 16 25 C -0.15 -1.94 9.72 71.98 0.70 -1.24 16 26 H 0.05 0.58 6.78 -2.39 -0.02 0.57 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.09 0.75 8.05 -2.39 -0.02 0.73 16 30 H 0.09 0.81 5.57 -2.39 -0.01 0.79 16 31 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.14 2.91 6.41 -2.91 -0.02 2.89 16 33 H 0.41 13.32 4.20 -92.71 -0.39 12.93 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 1.35 6.86 -2.38 -0.02 1.34 16 37 H 0.07 3.28 6.07 -2.39 -0.01 3.27 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 3.29 6.07 -2.39 -0.01 3.27 16 41 H 0.04 1.36 6.86 -2.38 -0.02 1.34 16 42 H 0.26 13.42 8.31 -92.70 -0.77 12.64 16 43 H 0.12 3.53 7.65 -2.92 -0.02 3.51 16 44 H 0.09 1.07 5.61 -2.39 -0.01 1.06 16 45 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 46 H 0.06 0.75 6.76 -2.39 -0.02 0.74 16 47 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -63.90 372.49 5.31 -58.58 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.56 Total: 22.95 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.88 Total: -22.67 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -2.09 Total: -76.62 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.25 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -63.90 5.31 -58.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324981847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.480 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds