Wall clock time and date at job start Tue Mar 31 2020 08:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47451 * 2 1 4 4 C 1.52999 * 109.46936 * 59.99614 * 3 2 1 5 5 C 1.53000 * 109.46921 * 300.00234 * 3 2 1 6 6 C 1.50700 * 109.47539 * 179.97438 * 3 2 1 7 7 C 1.38230 * 119.99956 * 179.97438 * 6 3 2 8 8 C 1.38233 * 119.99732 * 180.02562 * 7 6 3 9 9 C 1.38233 * 120.00355 * 359.95920 * 8 7 6 10 10 C 1.50701 * 120.00277 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46965 * 90.00105 * 10 9 8 12 12 C 1.47474 * 110.99920 * 74.02415 * 11 10 9 13 13 C 1.53518 * 87.93184 * 138.70422 * 12 11 10 14 14 O 1.42903 * 114.34124 * 87.63531 * 13 12 11 15 15 C 1.50700 * 114.17448 * 220.32970 * 13 12 11 16 16 H 1.08005 * 119.99373 * 93.83864 * 15 13 12 17 17 C 1.37873 * 120.00191 * 273.84179 * 15 13 12 18 18 N 1.31512 * 119.99755 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99949 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46916 * 60.00119 * 19 17 15 21 21 H 1.48502 * 109.47038 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47301 * 299.99909 * 19 17 15 23 23 C 1.47472 * 111.00187 * 169.99871 * 11 10 9 24 24 C 1.38236 * 119.99662 * 0.27430 * 9 8 7 25 25 C 1.38230 * 120.00026 * 359.53747 * 24 9 8 26 26 H 1.08995 * 109.47429 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47062 * 300.00036 * 1 2 3 28 28 H 1.09003 * 109.46662 * 59.99908 * 1 2 3 29 29 H 1.09003 * 109.47452 * 239.99971 * 2 1 3 30 30 H 1.09000 * 109.47335 * 119.99819 * 2 1 3 31 31 H 1.09005 * 109.47195 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47468 * 300.00365 * 4 3 2 33 33 H 1.08998 * 109.47337 * 60.00377 * 4 3 2 34 34 H 1.09003 * 109.46842 * 299.99332 * 5 3 2 35 35 H 1.08992 * 109.47365 * 59.99590 * 5 3 2 36 36 H 1.09003 * 109.47285 * 179.97438 * 5 3 2 37 37 H 1.07996 * 120.00255 * 0.02562 * 7 6 3 38 38 H 1.08007 * 120.00088 * 179.97438 * 8 7 6 39 39 H 1.08993 * 109.47133 * 330.00143 * 10 9 8 40 40 H 1.08996 * 109.47320 * 209.99883 * 10 9 8 41 41 H 1.08998 * 113.48515 * 253.46819 * 12 11 10 42 42 H 1.09001 * 113.47583 * 23.94235 * 12 11 10 43 43 H 0.96699 * 113.99911 * 86.08197 * 14 13 12 44 44 H 0.97007 * 119.99659 * 180.02562 * 18 17 15 45 45 H 1.08999 * 113.47718 * 336.06531 * 23 11 10 46 46 H 1.09004 * 113.47441 * 106.46993 * 23 11 10 47 47 H 1.08004 * 120.00242 * 179.73110 * 24 9 8 48 48 H 1.08001 * 120.00122 * 180.21081 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5470 1.4425 0.0006 7 6 4.2382 2.6396 0.0002 8 6 5.6205 2.6396 0.0003 9 6 6.3117 1.4425 0.0016 10 6 7.8187 1.4425 0.0011 11 7 8.3089 1.4443 1.3859 12 6 8.1279 0.1214 2.0123 13 6 9.5185 0.2904 2.6403 14 8 9.5184 0.9694 3.8978 15 6 10.3515 -0.9654 2.6423 16 1 11.0455 -1.1543 1.8366 17 6 10.2276 -1.8733 3.6726 18 7 9.3828 -1.6430 4.6538 19 14 11.2597 -3.4303 3.6746 20 1 12.7001 -3.0693 3.6858 21 1 10.9417 -4.2333 4.8826 22 1 10.9581 -4.2257 2.4574 23 6 9.7633 1.2052 1.4321 24 6 5.6205 0.2453 -0.0029 25 6 4.2382 0.2453 0.0010 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8937 3.1913 1.2495 32 1 0.4400 2.1638 1.2492 33 1 1.8933 1.6500 2.1392 34 1 1.8934 1.6499 -2.1392 35 1 0.4401 2.1637 -1.2493 36 1 1.8930 3.1915 -1.2491 37 1 3.6982 3.5749 -0.0002 38 1 6.1606 3.5749 -0.0005 39 1 8.1819 2.3317 -0.5140 40 1 8.1819 0.5519 -0.5117 41 1 7.3212 0.0943 2.7447 42 1 8.0728 -0.6957 1.2930 43 1 9.3640 0.3908 4.6571 44 1 9.2959 -2.2815 5.3789 45 1 10.1446 0.6774 0.5580 46 1 10.3425 2.0970 1.6718 47 1 6.1605 -0.6900 -0.0062 48 1 3.6982 -0.6900 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412970301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:54 Heat of formation + Delta-G solvation = -4.851222 kcal Electronic energy + Delta-G solvation = -25063.848825 eV Core-core repulsion = 21698.089453 eV Total energy + Delta-G solvation = -3365.759371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.04983 -39.05762 -36.94881 -34.32155 -32.07577 -31.75666 -30.98373 -29.80788 -27.79950 -27.39956 -25.82535 -24.84228 -24.41710 -22.69548 -21.81823 -20.83053 -18.78631 -18.56782 -17.29244 -16.51755 -15.35470 -15.11795 -14.98821 -14.89357 -14.86155 -14.33415 -13.99520 -13.85619 -13.59870 -13.57636 -13.24619 -12.91100 -12.45562 -12.21372 -12.12948 -12.09131 -12.00062 -11.81060 -11.44596 -11.33238 -11.28101 -11.20687 -10.99932 -10.80674 -10.71699 -10.70359 -10.43478 -10.28976 -10.16284 -9.97155 -9.30662 -8.66768 -8.64150 -8.33462 -8.07253 -7.85424 -6.26048 -4.36030 1.59034 1.68170 3.20774 3.26394 3.28646 3.97112 4.25437 4.52980 4.59160 4.82157 4.94101 5.02392 5.10494 5.17572 5.21228 5.23790 5.24566 5.31309 5.43794 5.54667 5.58971 5.68192 5.74713 5.75567 5.81069 5.86722 5.87956 5.90083 5.95164 5.99862 6.04020 6.10240 6.22306 6.25963 6.29917 6.31903 6.33778 6.44191 6.69421 6.71959 6.82163 6.94449 7.09257 7.18875 7.27978 7.37008 7.77320 7.96381 8.05162 8.65748 9.33968 9.70572 10.79839 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.003240 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.860992 B = 8640.326761 C = 9340.281431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.022 4.022 4 C -0.140 4.140 5 C -0.138 4.138 6 C -0.080 4.080 7 C -0.119 4.119 8 C -0.101 4.101 9 C -0.066 4.066 10 C 0.053 3.947 11 N -0.464 5.464 12 C -0.015 4.015 13 C 0.247 3.753 14 O -0.570 6.570 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.904 3.096 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.275 1.275 23 C 0.002 3.998 24 C -0.107 4.107 25 C -0.122 4.122 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.390 0.610 44 H 0.272 0.728 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.118 0.882 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.252 4.578 -10.393 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.022 4.022 4 C -0.197 4.197 5 C -0.195 4.195 6 C -0.080 4.080 7 C -0.137 4.137 8 C -0.119 4.119 9 C -0.067 4.067 10 C -0.075 4.075 11 N -0.186 5.186 12 C -0.145 4.145 13 C 0.206 3.794 14 O -0.382 6.382 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.139 4.139 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.245 0.755 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.136 0.864 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.511 5.631 -10.315 19.460 hybrid contribution 0.701 -2.090 -0.107 2.207 sum -14.811 3.540 -10.422 18.453 Atomic orbital electron populations 1.21908 0.95967 1.01463 1.01958 1.21668 0.95702 0.95744 1.02264 1.19454 0.90994 0.95819 0.95960 1.21940 1.00595 1.00243 0.96949 1.21926 1.00671 1.00142 0.96809 1.19693 0.94318 0.93253 1.00721 1.20849 0.93953 0.97240 1.01617 1.20956 0.93784 0.97627 0.99583 1.19778 0.95323 0.93090 0.98494 1.21640 0.91148 1.00941 0.93760 1.69058 1.07754 1.30436 1.11397 1.24627 1.03113 0.88424 0.98291 1.19352 0.89814 0.88377 0.81893 1.86029 1.94763 1.40302 1.17145 1.21551 1.23685 1.03863 1.08279 0.91652 1.25060 0.94627 0.98488 0.94924 1.69293 1.35753 1.37423 1.11341 0.86460 0.80638 0.82180 0.77610 1.19937 1.20986 1.20063 1.24097 0.89770 0.99729 0.99109 1.21094 0.94124 0.97755 0.99628 1.21062 0.93940 0.97628 1.01317 0.92961 0.92412 0.92534 0.91717 0.91514 0.92546 0.92289 0.92388 0.92651 0.92279 0.92588 0.86675 0.86326 0.90877 0.93825 0.91524 0.92514 0.75456 0.91776 0.91850 0.91062 0.86372 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.21 37.16 0.34 -0.88 16 2 C -0.12 -1.10 3.65 -26.73 -0.10 -1.20 16 3 C -0.02 -0.23 0.63 -155.66 -0.10 -0.32 16 4 C -0.14 -1.37 7.93 37.16 0.29 -1.08 16 5 C -0.14 -1.23 7.93 37.16 0.29 -0.93 16 6 C -0.08 -1.03 4.76 -104.63 -0.50 -1.52 16 7 C -0.12 -1.58 8.71 -39.59 -0.34 -1.93 16 8 C -0.10 -1.52 9.70 -39.59 -0.38 -1.90 16 9 C -0.07 -1.10 5.18 -104.62 -0.54 -1.64 16 10 C 0.05 0.94 4.98 -4.97 -0.02 0.91 16 11 N -0.46 -9.93 6.40 -246.11 -1.58 -11.50 16 12 C -0.02 -0.36 6.26 -7.55 -0.05 -0.41 16 13 C 0.25 6.36 1.57 -91.24 -0.14 6.22 16 14 O -0.57 -15.79 13.54 -35.23 -0.48 -16.27 16 15 C -0.54 -14.35 8.68 -34.44 -0.30 -14.65 16 16 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 17 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 18 N -0.90 -24.26 11.02 55.43 0.61 -23.64 16 19 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.00 0.04 7.12 -7.56 -0.05 -0.02 16 24 C -0.11 -1.71 9.13 -39.58 -0.36 -2.07 16 25 C -0.12 -1.70 8.98 -39.58 -0.36 -2.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 28 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 29 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 30 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16 31 H 0.06 0.55 7.39 -51.93 -0.38 0.16 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 36 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 37 H 0.12 1.30 7.10 -52.49 -0.37 0.93 16 38 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 39 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 40 H 0.04 0.76 7.50 -51.93 -0.39 0.37 16 41 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 42 H 0.06 1.30 7.33 -51.93 -0.38 0.92 16 43 H 0.39 10.95 6.33 45.56 0.29 11.24 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.06 1.31 7.72 -51.93 -0.40 0.91 16 46 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 47 H 0.12 1.88 7.73 -52.48 -0.41 1.47 16 48 H 0.12 1.48 5.90 -52.49 -0.31 1.17 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -28.16 369.74 -10.66 -38.82 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -7.35 Total: 13.35 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.41 Total: -21.69 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.97 Total: -35.15 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.48 Total: -16.27 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.16 -10.66 -38.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412970301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.967 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds