Wall clock time and date at job start Tue Mar 31 2020 08:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47451 * 2 1 4 4 C 1.52999 * 109.46936 * 59.99614 * 3 2 1 5 5 C 1.53000 * 109.46921 * 300.00234 * 3 2 1 6 6 C 1.50700 * 109.47539 * 179.97438 * 3 2 1 7 7 C 1.38230 * 119.99956 * 179.97438 * 6 3 2 8 8 C 1.38233 * 119.99732 * 180.02562 * 7 6 3 9 9 C 1.38233 * 120.00355 * 359.95920 * 8 7 6 10 10 C 1.50701 * 120.00277 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46965 * 90.00105 * 10 9 8 12 12 C 1.47474 * 110.99920 * 74.02415 * 11 10 9 13 13 C 1.53518 * 87.93184 * 138.70422 * 12 11 10 14 14 O 1.42903 * 114.34124 * 87.63531 * 13 12 11 15 15 C 1.50700 * 114.17448 * 220.32970 * 13 12 11 16 16 H 1.08005 * 119.99373 * 93.83864 * 15 13 12 17 17 C 1.37873 * 120.00191 * 273.84179 * 15 13 12 18 18 N 1.31512 * 119.99755 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99949 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46916 * 60.00119 * 19 17 15 21 21 H 1.48502 * 109.47038 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47301 * 299.99909 * 19 17 15 23 23 C 1.47472 * 111.00187 * 169.99871 * 11 10 9 24 24 C 1.38236 * 119.99662 * 0.27430 * 9 8 7 25 25 C 1.38230 * 120.00026 * 359.53747 * 24 9 8 26 26 H 1.08995 * 109.47429 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47062 * 300.00036 * 1 2 3 28 28 H 1.09003 * 109.46662 * 59.99908 * 1 2 3 29 29 H 1.09003 * 109.47452 * 239.99971 * 2 1 3 30 30 H 1.09000 * 109.47335 * 119.99819 * 2 1 3 31 31 H 1.09005 * 109.47195 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47468 * 300.00365 * 4 3 2 33 33 H 1.08998 * 109.47337 * 60.00377 * 4 3 2 34 34 H 1.09003 * 109.46842 * 299.99332 * 5 3 2 35 35 H 1.08992 * 109.47365 * 59.99590 * 5 3 2 36 36 H 1.09003 * 109.47285 * 179.97438 * 5 3 2 37 37 H 1.07996 * 120.00255 * 0.02562 * 7 6 3 38 38 H 1.08007 * 120.00088 * 179.97438 * 8 7 6 39 39 H 1.08993 * 109.47133 * 330.00143 * 10 9 8 40 40 H 1.08996 * 109.47320 * 209.99883 * 10 9 8 41 41 H 1.08998 * 113.48515 * 253.46819 * 12 11 10 42 42 H 1.09001 * 113.47583 * 23.94235 * 12 11 10 43 43 H 0.96699 * 113.99911 * 86.08197 * 14 13 12 44 44 H 0.97007 * 119.99659 * 180.02562 * 18 17 15 45 45 H 1.08999 * 113.47718 * 336.06531 * 23 11 10 46 46 H 1.09004 * 113.47441 * 106.46993 * 23 11 10 47 47 H 1.08004 * 120.00242 * 179.73110 * 24 9 8 48 48 H 1.08001 * 120.00122 * 180.21081 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5470 1.4425 0.0006 7 6 4.2382 2.6396 0.0002 8 6 5.6205 2.6396 0.0003 9 6 6.3117 1.4425 0.0016 10 6 7.8187 1.4425 0.0011 11 7 8.3089 1.4443 1.3859 12 6 8.1279 0.1214 2.0123 13 6 9.5185 0.2904 2.6403 14 8 9.5184 0.9694 3.8978 15 6 10.3515 -0.9654 2.6423 16 1 11.0455 -1.1543 1.8366 17 6 10.2276 -1.8733 3.6726 18 7 9.3828 -1.6430 4.6538 19 14 11.2597 -3.4303 3.6746 20 1 12.7001 -3.0693 3.6858 21 1 10.9417 -4.2333 4.8826 22 1 10.9581 -4.2257 2.4574 23 6 9.7633 1.2052 1.4321 24 6 5.6205 0.2453 -0.0029 25 6 4.2382 0.2453 0.0010 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8937 3.1913 1.2495 32 1 0.4400 2.1638 1.2492 33 1 1.8933 1.6500 2.1392 34 1 1.8934 1.6499 -2.1392 35 1 0.4401 2.1637 -1.2493 36 1 1.8930 3.1915 -1.2491 37 1 3.6982 3.5749 -0.0002 38 1 6.1606 3.5749 -0.0005 39 1 8.1819 2.3317 -0.5140 40 1 8.1819 0.5519 -0.5117 41 1 7.3212 0.0943 2.7447 42 1 8.0728 -0.6957 1.2930 43 1 9.3640 0.3908 4.6571 44 1 9.2959 -2.2815 5.3789 45 1 10.1446 0.6774 0.5580 46 1 10.3425 2.0970 1.6718 47 1 6.1605 -0.6900 -0.0062 48 1 3.6982 -0.6900 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412970301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:53 Heat of formation + Delta-G solvation = -21.948014 kcal Electronic energy + Delta-G solvation = -25064.590197 eV Core-core repulsion = 21698.089453 eV Total energy + Delta-G solvation = -3366.500744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33762 -40.54802 -37.99716 -36.20999 -34.11591 -32.97094 -32.09606 -30.78515 -29.33331 -28.12394 -27.46829 -26.66331 -25.43817 -24.12181 -22.94805 -22.07124 -20.49439 -19.67137 -19.26981 -17.56822 -17.12175 -16.81905 -16.46879 -16.13331 -15.85652 -15.59637 -15.58618 -15.20769 -14.65924 -14.40625 -14.33711 -14.25013 -14.02574 -13.89639 -13.37179 -13.27150 -13.09632 -12.85760 -12.82568 -12.71329 -12.64822 -12.57014 -12.27606 -12.16982 -12.04385 -12.00758 -11.83590 -11.50200 -11.33099 -11.18045 -11.15527 -10.66376 -10.12063 -9.78886 -9.71552 -9.35945 -8.26221 -6.44540 0.44033 0.53986 1.42251 1.43727 1.52129 2.36134 2.80185 2.94735 3.35881 3.64979 3.75304 3.83769 3.96775 4.07209 4.11456 4.16205 4.21961 4.35952 4.37120 4.44408 4.52163 4.53110 4.54930 4.62624 4.66779 4.76453 4.78619 4.86092 4.89038 4.98444 5.04967 5.11478 5.12947 5.14750 5.17885 5.20304 5.23828 5.27677 5.37150 5.40464 5.49651 5.52897 5.63844 5.73725 5.76947 5.78023 5.95069 6.14629 6.30904 6.61255 7.28611 7.54197 8.78856 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.003240 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.860992 B = 8640.326761 C = 9340.281431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.021 4.021 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.076 4.076 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.090 4.090 10 C 0.057 3.943 11 N -0.469 5.469 12 C 0.003 3.997 13 C 0.218 3.782 14 O -0.584 6.584 15 C -0.559 4.559 16 H 0.067 0.933 17 C 0.026 3.974 18 N -0.920 5.920 19 Si 0.970 3.030 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.269 1.269 23 C 0.011 3.989 24 C -0.124 4.124 25 C -0.129 4.129 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.383 0.617 44 H 0.275 0.725 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.109 0.891 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 4.771 -11.632 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.021 4.021 4 C -0.197 4.197 5 C -0.193 4.193 6 C -0.076 4.076 7 C -0.136 4.136 8 C -0.128 4.128 9 C -0.090 4.090 10 C -0.071 4.071 11 N -0.191 5.191 12 C -0.127 4.127 13 C 0.177 3.823 14 O -0.396 6.396 15 C -0.597 4.597 16 H 0.086 0.914 17 C -0.174 4.174 18 N -0.561 5.561 19 Si 0.794 3.206 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.194 1.194 23 C -0.117 4.117 24 C -0.143 4.143 25 C -0.147 4.147 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.238 0.762 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.127 0.873 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.810 5.837 -11.571 21.225 hybrid contribution 1.027 -2.109 0.268 2.361 sum -15.782 3.728 -11.303 19.767 Atomic orbital electron populations 1.21885 0.94430 1.02039 1.02600 1.21661 0.97052 0.95125 1.01626 1.19519 0.88972 0.96638 0.97004 1.21943 1.01836 0.99979 0.95893 1.21910 1.01775 0.99956 0.95616 1.20079 0.96081 0.92658 0.98774 1.21137 0.93460 0.98446 1.00601 1.21149 0.94728 0.97407 0.99531 1.19766 0.94689 0.93970 1.00604 1.21656 0.92181 1.01849 0.91441 1.68954 1.07191 1.28814 1.14128 1.24304 1.00864 0.89772 0.97755 1.19746 0.91204 0.89313 0.82006 1.86008 1.94961 1.40746 1.17856 1.21827 1.24287 1.04717 1.08851 0.91449 1.25852 0.95608 1.01452 0.94472 1.69379 1.36666 1.38350 1.11738 0.85430 0.78941 0.78394 0.77807 1.19575 1.20540 1.19353 1.24007 0.90516 0.99155 0.98042 1.21156 0.95117 0.97356 1.00663 1.21276 0.93346 0.98918 1.01113 0.92535 0.92066 0.91510 0.91831 0.92752 0.92317 0.90372 0.93984 0.93014 0.90534 0.92245 0.84298 0.85432 0.89007 0.93707 0.94210 0.92458 0.76211 0.91567 0.90263 0.90915 0.87314 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.21 71.98 0.66 -1.36 16 2 C -0.12 -2.03 3.65 30.59 0.11 -1.91 16 3 C -0.02 -0.39 0.63 -52.93 -0.03 -0.42 16 4 C -0.14 -2.44 7.93 71.98 0.57 -1.87 16 5 C -0.14 -2.02 7.93 71.98 0.57 -1.45 16 6 C -0.08 -1.86 4.76 -19.87 -0.09 -1.95 16 7 C -0.12 -2.97 8.71 22.27 0.19 -2.78 16 8 C -0.11 -3.19 9.70 22.27 0.22 -2.97 16 9 C -0.09 -2.96 5.18 -19.87 -0.10 -3.06 16 10 C 0.06 1.96 4.98 85.56 0.43 2.39 16 11 N -0.47 -20.11 6.40 -932.94 -5.97 -26.08 16 12 C 0.00 0.13 6.26 83.57 0.52 0.66 16 13 C 0.22 11.43 1.57 -11.19 -0.02 11.41 16 14 O -0.58 -33.22 13.54 -148.98 -2.02 -35.24 16 15 C -0.56 -30.22 8.68 25.60 0.22 -30.00 16 16 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 17 C 0.03 1.37 5.39 84.65 0.46 1.83 16 18 N -0.92 -50.54 11.02 21.45 0.24 -50.30 16 19 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 C 0.01 0.51 7.12 83.57 0.60 1.10 16 24 C -0.12 -4.00 9.13 22.27 0.20 -3.80 16 25 C -0.13 -3.57 8.98 22.27 0.20 -3.37 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 28 H 0.07 0.75 6.43 -2.39 -0.02 0.74 16 29 H 0.06 1.10 7.51 -2.39 -0.02 1.09 16 30 H 0.05 1.07 7.51 -2.39 -0.02 1.05 16 31 H 0.06 0.99 7.39 -2.38 -0.02 0.98 16 32 H 0.08 1.07 6.43 -2.39 -0.02 1.05 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 0.89 6.43 -2.39 -0.02 0.88 16 36 H 0.06 0.85 7.39 -2.39 -0.02 0.84 16 37 H 0.14 2.77 7.10 -2.91 -0.02 2.75 16 38 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.09 2.82 8.08 -2.39 -0.02 2.80 16 40 H 0.04 1.54 7.50 -2.39 -0.02 1.52 16 41 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 2.70 7.33 -2.39 -0.02 2.69 16 43 H 0.38 22.30 6.33 -74.06 -0.47 21.83 16 44 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 45 H 0.08 3.22 7.72 -2.39 -0.02 3.20 16 46 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 47 H 0.11 3.59 7.73 -2.91 -0.02 3.57 16 48 H 0.13 3.25 5.90 -2.91 -0.02 3.23 16 Total: -1.00 -60.33 369.74 -0.55 -60.89 By element: Atomic # 1 Polarization: 44.06 SS G_CDS: 0.47 Total: 44.53 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 4.70 Total: -37.56 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -5.74 Total: -76.38 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -2.02 Total: -35.24 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -60.33 -0.55 -60.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412970301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.938 kcal (2) G-P(sol) polarization free energy of solvation -60.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds