Wall clock time and date at job start Tue Mar 31 2020 08:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00266 * 2 1 4 4 C 1.53001 * 109.47464 * 89.99631 * 3 2 1 5 5 C 1.53000 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47329 * 59.99841 * 5 4 3 7 7 C 1.52995 * 109.46926 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.46813 * 299.99769 * 5 4 3 9 9 C 1.34777 * 120.00188 * 179.97438 * 2 1 3 10 10 O 1.21274 * 119.99999 * 180.02562 * 9 2 1 11 11 C 1.50700 * 119.99542 * 0.02562 * 9 2 1 12 12 H 1.08996 * 109.47265 * 299.99543 * 11 9 2 13 13 C 1.50703 * 109.47118 * 59.99990 * 11 9 2 14 14 H 1.08000 * 120.00148 * 27.29905 * 13 11 9 15 15 C 1.37881 * 119.99939 * 207.29262 * 13 11 9 16 16 N 1.31513 * 120.00043 * 5.91371 * 15 13 11 17 17 Si 1.86791 * 119.99857 * 185.90490 * 15 13 11 18 18 H 1.48506 * 109.46986 * 90.00975 * 17 15 13 19 19 H 1.48508 * 109.47119 * 210.00283 * 17 15 13 20 20 H 1.48497 * 109.47769 * 330.00613 * 17 15 13 21 21 C 1.50705 * 109.46887 * 179.97438 * 11 9 2 22 22 C 1.38230 * 119.99916 * 293.56778 * 21 11 9 23 23 C 1.38237 * 120.00176 * 179.78758 * 22 21 11 24 24 C 1.38238 * 119.99750 * 0.44640 * 23 22 21 25 25 C 1.38235 * 119.99670 * 359.80525 * 24 23 22 26 26 C 1.38231 * 119.99857 * 113.84212 * 21 11 9 27 27 H 1.09006 * 109.47248 * 90.00001 * 1 2 3 28 28 H 1.08994 * 109.47519 * 210.00116 * 1 2 3 29 29 H 1.09001 * 109.47037 * 330.00718 * 1 2 3 30 30 H 1.08997 * 109.47514 * 210.00132 * 3 2 1 31 31 H 1.09003 * 109.46707 * 329.99740 * 3 2 1 32 32 H 1.09007 * 109.46805 * 300.00286 * 4 3 2 33 33 H 1.08999 * 109.46603 * 59.99753 * 4 3 2 34 34 H 1.08994 * 109.47466 * 60.00111 * 6 5 4 35 35 H 1.09002 * 109.47188 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47277 * 300.00236 * 6 5 4 37 37 H 1.08998 * 109.47899 * 59.99461 * 7 5 4 38 38 H 1.09004 * 109.46796 * 180.02562 * 7 5 4 39 39 H 1.09003 * 109.46874 * 299.98976 * 7 5 4 40 40 H 1.09007 * 109.47342 * 60.00056 * 8 5 4 41 41 H 1.08993 * 109.47269 * 179.97438 * 8 5 4 42 42 H 1.09003 * 109.47296 * 300.00087 * 8 5 4 43 43 H 0.96992 * 120.00560 * 179.97438 * 16 15 13 44 44 H 1.08005 * 120.00113 * 359.97438 * 22 21 11 45 45 H 1.08001 * 120.00219 * 180.27408 * 23 22 21 46 46 H 1.07993 * 120.00237 * 179.83576 * 24 23 22 47 47 H 1.08007 * 119.99658 * 180.02562 * 25 24 23 48 48 H 1.07997 * 120.00152 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2170 3.0358 1.4424 6 6 2.3898 4.1018 0.7213 7 6 3.4725 3.4772 2.8849 8 6 4.5539 2.8533 0.7211 9 6 2.1389 -1.1672 0.0005 10 8 3.3516 -1.1671 0.0010 11 6 1.3853 -2.4722 0.0005 12 1 0.7584 -2.5298 0.8903 13 6 0.5194 -2.5523 -1.2303 14 1 0.8029 -2.0190 -2.1256 15 6 -0.6347 -3.3065 -1.2134 16 7 -1.0415 -3.8609 -0.0923 17 14 -1.6205 -3.5407 -2.7826 18 1 -1.1364 -4.7502 -3.4954 19 1 -3.0570 -3.7071 -2.4446 20 1 -1.4519 -2.3511 -3.6553 21 6 2.3647 -3.6177 0.0005 22 6 3.1776 -3.8320 -1.0967 23 6 4.0790 -4.8801 -1.0950 24 6 4.1609 -5.7194 0.0003 25 6 3.3443 -5.5082 1.0955 26 6 2.4460 -4.4575 1.0955 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 3.1499 1.1384 -0.5138 31 1 1.6085 2.0283 -0.5139 32 1 1.5000 1.8409 1.9563 33 1 3.0415 0.9508 1.9563 34 1 1.4374 4.2318 1.2351 35 1 2.9347 5.0459 0.7209 36 1 2.2081 3.7871 -0.3064 37 1 4.0620 2.7177 3.3984 38 1 4.0168 4.4216 2.8848 39 1 2.5203 3.6072 3.3991 40 1 4.3723 2.5385 -0.3066 41 1 5.0984 3.7975 0.7206 42 1 5.1433 2.0938 1.2349 43 1 -1.8536 -4.3912 -0.0803 44 1 3.1106 -3.1788 -1.9542 45 1 4.7173 -5.0448 -1.9505 46 1 4.8632 -6.5398 0.0006 47 1 3.4086 -6.1637 1.9514 48 1 1.8080 -4.2925 1.9511 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461150734.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:52 Heat of formation + Delta-G solvation = -34.665778 kcal Electronic energy + Delta-G solvation = -25756.834913 eV Core-core repulsion = 22389.782686 eV Total energy + Delta-G solvation = -3367.052227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.42270 -38.16384 -37.31852 -34.54293 -33.63582 -31.07558 -29.89811 -29.54951 -27.31641 -27.25961 -27.11945 -25.78284 -24.10346 -22.80703 -21.54620 -20.48880 -18.58895 -18.20539 -16.80047 -16.00451 -15.90850 -15.54216 -14.74344 -14.64332 -14.37299 -14.12429 -14.02184 -13.62955 -13.49919 -13.31728 -12.62197 -12.49173 -12.37777 -12.22418 -12.09385 -11.83692 -11.73503 -11.64959 -11.62600 -11.59316 -11.26047 -11.02644 -10.97641 -10.89446 -10.56453 -10.50640 -10.34500 -10.27453 -10.22761 -9.94916 -9.40748 -8.71584 -8.50999 -7.91191 -7.82332 -7.56662 -6.25273 -4.28879 2.41828 2.44638 3.20856 3.28676 3.29986 3.74079 3.89602 4.30396 4.84291 4.86610 4.87854 4.90252 5.11714 5.33266 5.52804 5.56936 5.64967 5.74244 5.75143 5.79679 5.82189 5.83680 5.90133 5.91419 5.93318 5.95558 6.06042 6.12039 6.18781 6.25574 6.31838 6.32395 6.42397 6.51812 6.55293 6.57241 6.64047 6.73622 6.91289 7.00785 7.21419 7.37815 7.40724 7.50040 7.65081 7.79610 7.99792 8.09138 8.30339 8.71807 9.25923 9.34925 10.83367 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.004968 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.232841 B = 5634.932195 C = 7106.103452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.616 5.616 3 C 0.114 3.886 4 C -0.122 4.122 5 C -0.067 4.067 6 C -0.143 4.143 7 C -0.139 4.139 8 C -0.142 4.142 9 C 0.527 3.473 10 O -0.566 6.566 11 C 0.053 3.947 12 H 0.085 0.915 13 C -0.509 4.509 14 H 0.061 0.939 15 C 0.076 3.924 16 N -0.878 5.878 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.008 4.008 22 C -0.084 4.084 23 C -0.135 4.135 24 C -0.149 4.149 25 C -0.133 4.133 26 C -0.117 4.117 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.266 0.734 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 9.787 2.942 11.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.349 5.349 3 C -0.010 4.010 4 C -0.161 4.161 5 C -0.068 4.068 6 C -0.200 4.200 7 C -0.197 4.197 8 C -0.200 4.200 9 C 0.318 3.682 10 O -0.445 6.445 11 C 0.032 3.968 12 H 0.103 0.897 13 C -0.546 4.546 14 H 0.079 0.921 15 C -0.129 4.129 16 N -0.514 5.514 17 Si 0.720 3.280 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.010 4.010 22 C -0.102 4.102 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.151 4.151 26 C -0.136 4.136 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.606 9.670 3.018 11.128 hybrid contribution -0.767 -0.312 -0.859 1.192 sum 3.839 9.359 2.159 10.343 Atomic orbital electron populations 1.21696 0.78998 1.01818 1.02005 1.47756 1.07249 1.05176 1.74735 1.21462 0.97724 0.85574 0.96198 1.21992 0.99967 0.95994 0.98113 1.20500 0.95665 0.95148 0.95467 1.21934 0.99558 0.97969 1.00566 1.21855 1.01334 1.00788 0.95690 1.21916 0.96176 1.01073 1.00807 1.21590 0.87499 0.86143 0.72934 1.90565 1.14792 1.87955 1.51211 1.18117 0.92158 0.85075 1.01488 0.89681 1.20610 1.05940 1.31318 0.96778 0.92119 1.24891 0.96867 0.94949 0.96162 1.69885 1.23477 1.32677 1.25395 0.86568 0.79023 0.78969 0.83429 1.20401 1.21065 1.19689 1.20042 0.92826 0.96204 0.91879 1.20815 0.94791 0.96445 0.98150 1.20948 0.99782 0.96638 0.97975 1.20784 1.00895 1.00186 0.94886 1.20891 0.97633 0.98524 0.98024 1.20970 0.98312 0.95897 0.98381 0.92696 0.89279 0.93909 0.90324 0.91496 0.92161 0.91560 0.92765 0.93033 0.92308 0.92700 0.92967 0.92854 0.92239 0.93216 0.92483 0.92397 0.87172 0.87675 0.87789 0.87645 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 9.15 59.85 0.55 2.27 16 2 N -0.62 -11.71 2.87 -181.57 -0.52 -12.24 16 3 C 0.11 1.80 4.70 -4.04 -0.02 1.78 16 4 C -0.12 -1.72 4.59 -26.73 -0.12 -1.84 16 5 C -0.07 -0.77 0.80 -154.51 -0.12 -0.89 16 6 C -0.14 -1.44 8.12 37.15 0.30 -1.14 16 7 C -0.14 -1.44 8.47 37.15 0.31 -1.13 16 8 C -0.14 -1.68 8.12 37.16 0.30 -1.38 16 9 C 0.53 11.87 6.96 -10.99 -0.08 11.79 16 10 O -0.57 -13.86 15.01 5.56 0.08 -13.78 16 11 C 0.05 1.25 1.55 -94.07 -0.15 1.10 16 12 H 0.09 2.14 6.46 -51.93 -0.34 1.80 16 13 C -0.51 -12.51 5.48 -34.44 -0.19 -12.70 16 14 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 15 C 0.08 1.89 5.45 -17.82 -0.10 1.79 16 16 N -0.88 -22.74 12.88 55.43 0.71 -22.03 16 17 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 C -0.01 -0.20 4.29 -104.62 -0.45 -0.65 16 22 C -0.08 -1.92 8.33 -39.58 -0.33 -2.25 16 23 C -0.14 -2.74 10.05 -39.58 -0.40 -3.13 16 24 C -0.15 -2.85 10.05 -39.58 -0.40 -3.24 16 25 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 26 C -0.12 -2.61 9.67 -39.58 -0.38 -3.00 16 27 H 0.05 0.99 7.88 -51.93 -0.41 0.58 16 28 H 0.09 1.77 6.14 -51.93 -0.32 1.45 16 29 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.08 1.36 5.71 -51.93 -0.30 1.07 16 31 H 0.07 0.92 6.36 -51.93 -0.33 0.59 16 32 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.74 6.43 -51.92 -0.33 0.41 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 44 H 0.11 2.56 7.88 -52.48 -0.41 2.15 16 45 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 46 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 48 H 0.11 2.38 7.96 -52.49 -0.42 1.96 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -27.83 380.37 -8.90 -36.73 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -8.23 Total: 6.43 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.66 Total: -15.65 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.19 Total: -34.26 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.08 Total: -13.78 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.83 -8.90 -36.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461150734.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.065 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds