Wall clock time and date at job start Tue Mar 31 2020 08:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47037 * 2 1 4 4 C 1.53008 * 112.90560 * 293.25915 * 3 2 1 5 5 C 1.52994 * 109.47316 * 310.79113 * 4 3 2 6 6 C 1.53776 * 113.61676 * 64.51077 * 3 2 1 7 7 H 1.08998 * 113.61053 * 25.34811 * 6 3 2 8 8 N 1.46498 * 113.61617 * 254.52726 * 6 3 2 9 9 C 1.39684 * 119.99766 * 154.99705 * 8 6 3 10 10 C 1.39328 * 119.95598 * 0.30060 * 9 8 6 11 11 C 1.38478 * 120.42775 * 180.25778 * 10 9 8 12 12 C 1.37691 * 120.32164 * 359.43972 * 11 10 9 13 13 C 1.40742 * 119.89385 * 0.28077 * 12 11 10 14 14 C 1.41410 * 120.20669 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99585 * 208.34595 * 14 13 12 16 16 C 1.39928 * 120.00319 * 28.34465 * 14 13 12 17 17 N 1.30837 * 119.99643 * 11.82296 * 16 14 13 18 18 Si 1.86799 * 120.00259 * 191.82690 * 16 14 13 19 19 H 1.48493 * 109.47169 * 59.99594 * 18 16 14 20 20 H 1.48495 * 109.47139 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46824 * 299.99700 * 18 16 14 22 22 C 1.38279 * 119.94897 * 180.02562 * 9 8 6 23 23 C 1.53781 * 87.07953 * 139.98095 * 6 3 2 24 24 C 1.53769 * 87.08338 * 334.56716 * 23 6 3 25 25 H 1.09000 * 113.69683 * 270.87460 * 24 23 6 26 26 O 1.42896 * 113.61693 * 139.97981 * 24 23 6 27 27 C 1.42906 * 114.00179 * 112.50153 * 26 24 23 28 28 H 1.09000 * 109.47175 * 295.22378 * 1 2 3 29 29 H 1.08995 * 109.47433 * 55.22779 * 1 2 3 30 30 H 1.09006 * 109.47641 * 175.22427 * 1 2 3 31 31 H 1.09004 * 109.46917 * 239.99896 * 2 1 3 32 32 H 1.08995 * 109.47042 * 120.00122 * 2 1 3 33 33 H 1.08994 * 109.46771 * 70.79454 * 4 3 2 34 34 H 1.09005 * 109.46744 * 190.79090 * 4 3 2 35 35 H 1.09005 * 109.47157 * 66.81885 * 5 4 3 36 36 H 1.08993 * 109.47308 * 186.81977 * 5 4 3 37 37 H 1.09000 * 109.47298 * 306.82053 * 5 4 3 38 38 H 0.96993 * 120.00359 * 335.00154 * 8 6 3 39 39 H 1.08004 * 119.78786 * 359.97438 * 10 9 8 40 40 H 1.08003 * 119.83988 * 179.72275 * 11 10 9 41 41 H 1.07997 * 120.05286 * 180.25949 * 12 11 10 42 42 H 0.96997 * 119.99677 * 180.02562 * 17 16 14 43 43 H 1.08004 * 120.16718 * 0.05073 * 22 9 8 44 44 H 1.08993 * 113.61481 * 89.12248 * 23 6 3 45 45 H 1.09008 * 113.60976 * 220.01781 * 23 6 3 46 46 H 1.09003 * 109.46992 * 180.02562 * 27 26 24 47 47 H 1.08997 * 109.47242 * 300.00310 * 27 26 24 48 48 H 1.08997 * 109.46856 * 60.00897 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7137 2.1894 -1.2949 5 6 2.1250 1.3339 -2.4947 6 6 1.6736 2.2254 1.2718 7 1 1.5112 1.5912 2.1433 8 7 0.6004 3.2022 1.0710 9 6 -0.1917 3.6011 2.1501 10 6 0.0436 3.0741 3.4183 11 6 -0.7391 3.4587 4.4939 12 6 -1.7521 4.3757 4.3238 13 6 -1.9980 4.9210 3.0498 14 6 -3.0370 5.8628 2.8675 15 1 -3.5322 5.9421 1.9109 16 6 -3.4236 6.6919 3.9263 17 7 -2.6848 6.7645 5.0036 18 14 -4.9946 7.6947 3.8018 19 1 -6.1516 6.7818 3.6201 20 1 -5.1774 8.4848 5.0458 21 1 -4.9033 8.6154 2.6402 22 6 -1.2048 4.5228 1.9593 23 6 3.0832 2.8368 1.2067 24 6 3.5088 1.5766 0.4352 25 1 3.8499 0.7643 1.0771 26 8 4.4042 1.8425 -0.6462 27 6 5.7218 1.3251 -0.4506 28 1 -0.3633 0.4379 0.9297 29 1 -0.3634 0.5861 -0.8441 30 1 -0.3634 -1.0241 -0.0856 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.6429 2.3877 -1.3400 34 1 2.2592 3.1329 -1.3173 35 1 1.4948 0.4457 -2.5408 36 1 2.0057 1.9119 -3.4110 37 1 3.1675 1.0344 -2.3871 38 1 0.4399 3.5719 0.1888 39 1 0.8388 2.3576 3.5624 40 1 -0.5512 3.0409 5.4719 41 1 -2.3572 4.6757 5.1665 42 1 -2.9529 7.3390 5.7378 43 1 -1.3859 4.9347 0.9775 44 1 3.1359 3.7501 0.6143 45 1 3.5620 2.9348 2.1811 46 1 6.3399 1.5690 -1.3147 47 1 6.1575 1.7693 0.4443 48 1 5.6732 0.2426 -0.3323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474529105.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:49 Heat of formation + Delta-G solvation = -15.528752 kcal Electronic energy + Delta-G solvation = -25478.169500 eV Core-core repulsion = 22111.947116 eV Total energy + Delta-G solvation = -3366.222384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60767 -37.62053 -36.64756 -34.33285 -33.15345 -32.07466 -31.23128 -29.69366 -27.67623 -26.67049 -25.52808 -25.15329 -23.71105 -23.14216 -21.32550 -20.66827 -20.10499 -18.05052 -17.32488 -16.77916 -15.98839 -15.57124 -15.40425 -14.98207 -14.77030 -14.47126 -14.18965 -13.79430 -13.59169 -12.90066 -12.84467 -12.82941 -12.60301 -12.40286 -12.09428 -12.05069 -11.83504 -11.75319 -11.58192 -11.37899 -11.23472 -11.09180 -10.99854 -10.81182 -10.68103 -10.49663 -10.33072 -10.22760 -10.11289 -9.70647 -9.26472 -9.24067 -9.18196 -8.63370 -7.31414 -6.62285 -6.14046 -4.28523 2.90914 3.12057 3.15357 3.25619 3.39356 3.65037 4.01613 4.38058 4.49347 4.58264 4.73748 4.78991 4.99565 5.08347 5.16606 5.23716 5.27463 5.38454 5.43989 5.47999 5.53017 5.60270 5.75143 5.77876 5.87824 5.93996 5.99202 6.02163 6.07281 6.19703 6.22759 6.32454 6.36396 6.41520 6.46299 6.56088 6.58257 7.07110 7.11129 7.17374 7.19124 7.39702 7.45087 7.83000 7.95680 8.18362 8.30326 8.57284 8.68146 8.83881 9.04717 9.16150 10.33839 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.003209 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.811606 B = 8722.136919 C = 8936.582877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.082 4.082 4 C -0.090 4.090 5 C -0.146 4.146 6 C 0.157 3.843 7 H 0.103 0.897 8 N -0.743 5.743 9 C 0.224 3.776 10 C -0.298 4.298 11 C -0.078 4.078 12 C -0.194 4.194 13 C 0.142 3.858 14 C -0.466 4.466 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.801 5.801 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.285 4.285 23 C -0.174 4.174 24 C 0.069 3.931 25 H 0.084 0.916 26 O -0.368 6.368 27 C 0.029 3.971 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.390 0.610 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.278 0.722 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.039 0.961 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.259 -10.976 -8.919 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.084 4.084 4 C -0.128 4.128 5 C -0.203 4.203 6 C 0.048 3.952 7 H 0.121 0.879 8 N -0.374 5.374 9 C 0.126 3.874 10 C -0.320 4.320 11 C -0.097 4.097 12 C -0.214 4.214 13 C 0.139 3.861 14 C -0.497 4.497 15 H 0.092 0.908 16 C -0.141 4.141 17 N -0.427 5.427 18 Si 0.733 3.267 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.309 4.309 23 C -0.213 4.213 24 C 0.011 3.989 25 H 0.102 0.898 26 O -0.286 6.286 27 C -0.067 4.067 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.224 0.776 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.058 0.942 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.302 -10.853 -8.751 17.947 hybrid contribution -0.440 0.570 0.027 0.721 sum 10.862 -10.282 -8.724 17.315 Atomic orbital electron populations 1.21713 0.95101 1.00862 1.02958 1.21496 0.96633 0.94870 1.01456 1.22653 0.93352 0.95897 0.96472 1.21042 1.00754 0.98628 0.92356 1.21767 1.02037 0.99454 0.97076 1.21849 0.86064 0.90639 0.96608 0.87909 1.44358 1.35888 1.47968 1.09228 1.17474 0.90070 0.93164 0.86735 1.19877 1.08030 1.11682 0.92450 1.20453 0.96031 0.97358 0.95833 1.21199 1.01343 1.00247 0.98629 1.17336 0.89460 0.88676 0.90629 1.19506 1.16084 1.16314 0.97770 0.90831 1.25859 0.97138 0.96589 0.94513 1.69830 1.34992 1.32303 1.05551 0.86384 0.82268 0.79740 0.78332 1.18987 1.20465 1.19174 1.20452 1.02560 1.08706 0.99147 1.24080 0.98412 0.98581 1.00270 1.23691 0.89098 0.97426 0.88693 0.89810 1.87956 1.20406 1.78146 1.42087 1.22748 0.84856 0.97567 1.01573 0.91832 0.92645 0.93413 0.91799 0.92390 0.91798 0.91474 0.93239 0.93501 0.91672 0.77559 0.89728 0.89764 0.86716 0.91142 0.89384 0.89168 0.91465 0.90055 0.94248 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.61 37.16 0.36 -1.45 16 2 C -0.11 -1.18 4.94 -26.73 -0.13 -1.31 16 3 C -0.08 -0.98 0.56 -153.70 -0.09 -1.07 16 4 C -0.09 -1.08 3.46 -26.73 -0.09 -1.18 16 5 C -0.15 -1.56 8.96 37.15 0.33 -1.22 16 6 C 0.16 2.27 2.83 -67.12 -0.19 2.08 16 7 H 0.10 1.57 6.09 -51.93 -0.32 1.26 16 8 N -0.74 -12.95 5.40 -51.44 -0.28 -13.22 16 9 C 0.22 4.94 6.64 -83.86 -0.56 4.39 16 10 C -0.30 -6.67 9.27 -39.09 -0.36 -7.03 16 11 C -0.08 -1.86 10.02 -39.69 -0.40 -2.26 16 12 C -0.19 -5.17 8.66 -38.84 -0.34 -5.51 16 13 C 0.14 3.87 5.55 -106.85 -0.59 3.28 16 14 C -0.47 -12.70 9.06 -37.74 -0.34 -13.04 16 15 H 0.07 1.93 7.87 -52.48 -0.41 1.52 16 16 C 0.08 1.95 5.23 -17.34 -0.09 1.86 16 17 N -0.80 -21.34 10.87 55.55 0.60 -20.73 16 18 Si 0.91 19.22 29.58 -169.99 -5.03 14.19 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.28 -7.08 9.63 -38.67 -0.37 -7.45 16 23 C -0.17 -2.35 7.36 -25.93 -0.19 -2.54 16 24 C 0.07 0.79 3.73 -25.92 -0.10 0.70 16 25 H 0.08 0.85 7.76 -51.93 -0.40 0.45 16 26 O -0.37 -4.21 8.21 -35.23 -0.29 -4.50 16 27 C 0.03 0.25 10.85 101.05 1.10 1.34 16 28 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 29 H 0.05 0.68 6.97 -51.93 -0.36 0.32 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 32 H 0.06 0.60 8.04 -51.93 -0.42 0.19 16 33 H 0.06 0.81 6.33 -51.93 -0.33 0.48 16 34 H 0.07 0.87 7.19 -51.93 -0.37 0.50 16 35 H 0.05 0.50 6.89 -51.93 -0.36 0.14 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.71 6.51 -51.93 -0.34 0.37 16 38 H 0.39 6.45 6.68 -40.82 -0.27 6.18 16 39 H 0.08 1.70 6.03 -52.48 -0.32 1.38 16 40 H 0.08 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.11 3.18 6.22 -52.49 -0.33 2.85 16 42 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 43 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 44 H 0.09 1.32 7.65 -51.93 -0.40 0.93 16 45 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -28.02 369.40 -9.35 -37.38 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -7.88 Total: 11.74 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -2.05 Total: -30.42 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.33 Total: -33.96 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.29 Total: -4.50 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.02 -9.35 -37.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474529105.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.848 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds