Wall clock time and date at job start Tue Mar 31 2020 08:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47037 * 2 1 4 4 C 1.53008 * 112.90560 * 293.25915 * 3 2 1 5 5 C 1.52994 * 109.47316 * 310.79113 * 4 3 2 6 6 C 1.53776 * 113.61676 * 64.51077 * 3 2 1 7 7 H 1.08998 * 113.61053 * 25.34811 * 6 3 2 8 8 N 1.46498 * 113.61617 * 254.52726 * 6 3 2 9 9 C 1.39684 * 119.99766 * 154.99705 * 8 6 3 10 10 C 1.39328 * 119.95598 * 0.30060 * 9 8 6 11 11 C 1.38478 * 120.42775 * 180.25778 * 10 9 8 12 12 C 1.37691 * 120.32164 * 359.43972 * 11 10 9 13 13 C 1.40742 * 119.89385 * 0.28077 * 12 11 10 14 14 C 1.41410 * 120.20669 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99585 * 208.34595 * 14 13 12 16 16 C 1.39928 * 120.00319 * 28.34465 * 14 13 12 17 17 N 1.30837 * 119.99643 * 11.82296 * 16 14 13 18 18 Si 1.86799 * 120.00259 * 191.82690 * 16 14 13 19 19 H 1.48493 * 109.47169 * 59.99594 * 18 16 14 20 20 H 1.48495 * 109.47139 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46824 * 299.99700 * 18 16 14 22 22 C 1.38279 * 119.94897 * 180.02562 * 9 8 6 23 23 C 1.53781 * 87.07953 * 139.98095 * 6 3 2 24 24 C 1.53769 * 87.08338 * 334.56716 * 23 6 3 25 25 H 1.09000 * 113.69683 * 270.87460 * 24 23 6 26 26 O 1.42896 * 113.61693 * 139.97981 * 24 23 6 27 27 C 1.42906 * 114.00179 * 112.50153 * 26 24 23 28 28 H 1.09000 * 109.47175 * 295.22378 * 1 2 3 29 29 H 1.08995 * 109.47433 * 55.22779 * 1 2 3 30 30 H 1.09006 * 109.47641 * 175.22427 * 1 2 3 31 31 H 1.09004 * 109.46917 * 239.99896 * 2 1 3 32 32 H 1.08995 * 109.47042 * 120.00122 * 2 1 3 33 33 H 1.08994 * 109.46771 * 70.79454 * 4 3 2 34 34 H 1.09005 * 109.46744 * 190.79090 * 4 3 2 35 35 H 1.09005 * 109.47157 * 66.81885 * 5 4 3 36 36 H 1.08993 * 109.47308 * 186.81977 * 5 4 3 37 37 H 1.09000 * 109.47298 * 306.82053 * 5 4 3 38 38 H 0.96993 * 120.00359 * 335.00154 * 8 6 3 39 39 H 1.08004 * 119.78786 * 359.97438 * 10 9 8 40 40 H 1.08003 * 119.83988 * 179.72275 * 11 10 9 41 41 H 1.07997 * 120.05286 * 180.25949 * 12 11 10 42 42 H 0.96997 * 119.99677 * 180.02562 * 17 16 14 43 43 H 1.08004 * 120.16718 * 0.05073 * 22 9 8 44 44 H 1.08993 * 113.61481 * 89.12248 * 23 6 3 45 45 H 1.09008 * 113.60976 * 220.01781 * 23 6 3 46 46 H 1.09003 * 109.46992 * 180.02562 * 27 26 24 47 47 H 1.08997 * 109.47242 * 300.00310 * 27 26 24 48 48 H 1.08997 * 109.46856 * 60.00897 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7137 2.1894 -1.2949 5 6 2.1250 1.3339 -2.4947 6 6 1.6736 2.2254 1.2718 7 1 1.5112 1.5912 2.1433 8 7 0.6004 3.2022 1.0710 9 6 -0.1917 3.6011 2.1501 10 6 0.0436 3.0741 3.4183 11 6 -0.7391 3.4587 4.4939 12 6 -1.7521 4.3757 4.3238 13 6 -1.9980 4.9210 3.0498 14 6 -3.0370 5.8628 2.8675 15 1 -3.5322 5.9421 1.9109 16 6 -3.4236 6.6919 3.9263 17 7 -2.6848 6.7645 5.0036 18 14 -4.9946 7.6947 3.8018 19 1 -6.1516 6.7818 3.6201 20 1 -5.1774 8.4848 5.0458 21 1 -4.9033 8.6154 2.6402 22 6 -1.2048 4.5228 1.9593 23 6 3.0832 2.8368 1.2067 24 6 3.5088 1.5766 0.4352 25 1 3.8499 0.7643 1.0771 26 8 4.4042 1.8425 -0.6462 27 6 5.7218 1.3251 -0.4506 28 1 -0.3633 0.4379 0.9297 29 1 -0.3634 0.5861 -0.8441 30 1 -0.3634 -1.0241 -0.0856 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.6429 2.3877 -1.3400 34 1 2.2592 3.1329 -1.3173 35 1 1.4948 0.4457 -2.5408 36 1 2.0057 1.9119 -3.4110 37 1 3.1675 1.0344 -2.3871 38 1 0.4399 3.5719 0.1888 39 1 0.8388 2.3576 3.5624 40 1 -0.5512 3.0409 5.4719 41 1 -2.3572 4.6757 5.1665 42 1 -2.9529 7.3390 5.7378 43 1 -1.3859 4.9347 0.9775 44 1 3.1359 3.7501 0.6143 45 1 3.5620 2.9348 2.1811 46 1 6.3399 1.5690 -1.3147 47 1 6.1575 1.7693 0.4443 48 1 5.6732 0.2426 -0.3323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474529105.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:48 Heat of formation + Delta-G solvation = -29.212453 kcal Electronic energy + Delta-G solvation = -25478.762870 eV Core-core repulsion = 22111.947116 eV Total energy + Delta-G solvation = -3366.815754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66805 -39.35424 -37.64312 -35.99096 -34.60561 -33.46224 -32.15917 -31.63053 -29.27597 -27.50996 -27.13802 -26.46872 -24.81047 -24.26903 -22.62399 -22.25610 -21.80414 -19.21114 -19.06673 -17.82647 -17.33956 -16.97284 -16.68645 -16.35918 -16.13004 -15.69665 -15.38255 -15.09085 -14.75646 -14.37757 -14.22870 -14.03765 -13.88473 -13.76086 -13.58569 -13.30894 -13.10791 -12.87623 -12.78485 -12.69420 -12.66032 -12.40396 -12.29721 -12.10447 -11.98299 -11.77783 -11.62764 -11.47303 -11.29000 -11.23785 -11.08230 -10.99574 -10.28253 -10.15975 -9.28075 -8.54872 -7.86889 -6.32782 1.07342 1.36617 1.39237 1.50433 1.60379 2.23955 2.64622 2.84536 3.14339 3.46047 3.58512 3.78789 3.84573 3.99634 4.16995 4.27693 4.36867 4.44151 4.51745 4.55760 4.59923 4.61957 4.63733 4.75997 4.81111 4.84162 4.91934 4.94984 4.99218 5.07198 5.09346 5.13640 5.18281 5.19142 5.27528 5.30414 5.40418 5.43552 5.45599 5.49868 5.61585 5.66105 5.97572 6.05671 6.22269 6.35175 6.38370 6.67737 6.93676 7.04295 7.07104 7.27448 8.42823 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.003209 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.811606 B = 8722.136919 C = 8936.582877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.073 4.073 4 C -0.089 4.089 5 C -0.139 4.139 6 C 0.144 3.856 7 H 0.101 0.899 8 N -0.732 5.732 9 C 0.237 3.763 10 C -0.296 4.296 11 C -0.077 4.077 12 C -0.227 4.227 13 C 0.114 3.886 14 C -0.506 4.506 15 H 0.070 0.930 16 C 0.033 3.967 17 N -0.832 5.832 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.261 1.261 22 C -0.308 4.308 23 C -0.175 4.175 24 C 0.084 3.916 25 H 0.105 0.895 26 O -0.382 6.382 27 C 0.023 3.977 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.394 0.606 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.284 0.716 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.652 -12.530 -9.819 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.074 4.074 4 C -0.127 4.127 5 C -0.196 4.196 6 C 0.037 3.963 7 H 0.119 0.881 8 N -0.363 5.363 9 C 0.136 3.864 10 C -0.319 4.319 11 C -0.096 4.096 12 C -0.248 4.248 13 C 0.111 3.889 14 C -0.536 4.536 15 H 0.088 0.912 16 C -0.181 4.181 17 N -0.459 5.459 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.186 1.186 22 C -0.333 4.333 23 C -0.215 4.215 24 C 0.025 3.975 25 H 0.123 0.877 26 O -0.301 6.301 27 C -0.073 4.073 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.229 0.771 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.061 0.939 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.745 -12.436 -9.683 20.270 hybrid contribution -0.702 0.959 0.236 1.212 sum 12.043 -11.477 -9.447 19.132 Atomic orbital electron populations 1.21673 0.96097 1.01387 1.01199 1.21495 0.95592 0.94128 1.02817 1.22559 0.93875 0.96130 0.94867 1.21010 0.99894 0.98507 0.93285 1.21704 1.02137 0.99424 0.96373 1.22116 0.85405 0.90504 0.98262 0.88143 1.44412 1.35656 1.47992 1.08198 1.17512 0.89274 0.91616 0.88025 1.20183 1.08144 1.11647 0.91948 1.20742 0.95077 0.96307 0.97482 1.21112 1.03136 1.02503 0.98045 1.17681 0.90284 0.89309 0.91632 1.19774 1.17489 1.17809 0.98530 0.91187 1.26730 1.00278 0.97340 0.93707 1.69906 1.36605 1.33105 1.06289 0.85256 0.77560 0.78058 0.78781 1.18501 1.19174 1.18569 1.20555 1.03797 1.10231 0.98670 1.24030 0.97676 0.99154 1.00638 1.23554 0.88877 0.96482 0.88583 0.87705 1.87938 1.21648 1.78604 1.41887 1.22949 0.83513 0.98495 1.02391 0.94470 0.93284 0.91979 0.90218 0.91186 0.92835 0.92739 0.92472 0.93148 0.91527 0.77091 0.86819 0.87479 0.88676 0.90506 0.89493 0.90630 0.91310 0.88839 0.93948 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.61 71.98 0.69 -2.59 16 2 C -0.10 -1.96 4.94 30.59 0.15 -1.81 16 3 C -0.07 -1.59 0.56 -51.66 -0.03 -1.62 16 4 C -0.09 -2.02 3.46 30.59 0.11 -1.91 16 5 C -0.14 -2.64 8.96 71.98 0.64 -2.00 16 6 C 0.14 3.94 2.83 45.52 0.13 4.07 16 7 H 0.10 2.84 6.09 -2.39 -0.01 2.83 16 8 N -0.73 -25.26 5.40 -316.65 -1.71 -26.97 16 9 C 0.24 10.52 6.64 38.16 0.25 10.77 16 10 C -0.30 -13.08 9.27 22.59 0.21 -12.87 16 11 C -0.08 -3.73 10.02 22.20 0.22 -3.51 16 12 C -0.23 -12.61 8.66 22.75 0.20 -12.41 16 13 C 0.11 6.48 5.55 -21.31 -0.12 6.36 16 14 C -0.51 -28.81 9.06 23.46 0.21 -28.60 16 15 H 0.07 3.86 7.87 -2.91 -0.02 3.83 16 16 C 0.03 1.75 5.23 85.25 0.45 2.19 16 17 N -0.83 -45.85 10.87 21.82 0.24 -45.61 16 18 Si 0.98 40.16 29.58 68.60 2.03 42.19 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 C -0.31 -15.86 9.63 22.86 0.22 -15.64 16 23 C -0.18 -4.45 7.36 31.12 0.23 -4.22 16 24 C 0.08 1.68 3.73 31.12 0.12 1.79 16 25 H 0.11 1.71 7.76 -2.39 -0.02 1.69 16 26 O -0.38 -7.69 8.21 -148.98 -1.22 -8.92 16 27 C 0.02 0.31 10.85 113.37 1.23 1.54 16 28 H 0.04 1.02 7.75 -2.39 -0.02 1.00 16 29 H 0.05 1.15 6.97 -2.39 -0.02 1.13 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.08 1.32 6.43 -2.38 -0.02 1.31 16 32 H 0.07 1.20 8.04 -2.39 -0.02 1.18 16 33 H 0.05 1.31 6.33 -2.39 -0.02 1.30 16 34 H 0.05 1.37 7.19 -2.38 -0.02 1.35 16 35 H 0.06 1.00 6.89 -2.38 -0.02 0.98 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.26 6.51 -2.39 -0.02 1.25 16 38 H 0.39 13.06 6.68 -92.71 -0.62 12.44 16 39 H 0.11 4.32 6.03 -2.91 -0.02 4.30 16 40 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.10 5.55 6.22 -2.91 -0.02 5.53 16 42 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 43 H 0.09 4.34 8.06 -2.91 -0.02 4.31 16 44 H 0.08 2.16 7.65 -2.39 -0.02 2.14 16 45 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -62.73 369.40 4.57 -58.16 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: 0.33 Total: 41.61 kcal Atomic # 6 Polarization: -65.37 SS G_CDS: 4.91 Total: -60.46 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.47 Total: -72.58 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.22 Total: -8.92 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -62.73 4.57 -58.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474529105.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.950 kcal (2) G-P(sol) polarization free energy of solvation -62.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds