Wall clock time and date at job start Tue Mar 31 2020 09:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 C 1.53001 * 109.46638 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47029 * 185.04616 * 4 3 2 6 6 H 1.09001 * 109.47331 * 55.45648 * 5 4 3 7 7 C 1.53001 * 109.47272 * 295.45923 * 5 4 3 8 8 C 1.53001 * 109.46958 * 298.56620 * 7 5 4 9 9 C 1.52997 * 109.47389 * 175.45787 * 5 4 3 10 10 C 1.50697 * 109.47464 * 185.00104 * 9 5 4 11 11 O 1.21287 * 119.99986 * 0.02562 * 10 9 5 12 12 N 1.34773 * 120.00501 * 180.02562 * 10 9 5 13 13 C 1.39934 * 120.00694 * 174.98789 * 12 10 9 14 14 C 1.39288 * 119.95030 * 145.71281 * 13 12 10 15 15 C 1.38494 * 120.43084 * 179.97438 * 14 13 12 16 16 C 1.37685 * 120.31600 * 359.97438 * 15 14 13 17 17 C 1.40739 * 119.89018 * 0.02562 * 16 15 14 18 18 C 1.41409 * 120.21055 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99792 * 149.92069 * 18 17 16 20 20 C 1.39925 * 119.99970 * 329.91481 * 18 17 16 21 21 N 1.30840 * 120.00239 * 347.67874 * 20 18 17 22 22 Si 1.86800 * 120.00032 * 167.68185 * 20 18 17 23 23 H 1.48496 * 109.47455 * 94.98285 * 22 20 18 24 24 H 1.48505 * 109.47103 * 214.98340 * 22 20 18 25 25 H 1.48500 * 109.47076 * 334.97880 * 22 20 18 26 26 C 1.38247 * 119.94524 * 325.44195 * 13 12 10 27 27 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47479 * 300.00494 * 1 2 3 29 29 H 1.09005 * 109.46829 * 60.00207 * 1 2 3 30 30 H 1.09000 * 109.46871 * 239.99958 * 2 1 3 31 31 H 1.08996 * 109.46899 * 120.00021 * 2 1 3 32 32 H 1.08997 * 109.46837 * 60.00202 * 3 2 1 33 33 H 1.08996 * 109.47304 * 299.99773 * 3 2 1 34 34 H 1.09000 * 109.46952 * 65.04999 * 4 3 2 35 35 H 1.08994 * 109.47721 * 305.04950 * 4 3 2 36 36 H 1.08996 * 109.47457 * 178.56255 * 7 5 4 37 37 H 1.09005 * 109.47067 * 58.56598 * 7 5 4 38 38 H 1.08992 * 109.46921 * 300.23927 * 8 7 5 39 39 H 1.09003 * 109.46776 * 180.24048 * 8 7 5 40 40 H 1.09001 * 109.47055 * 60.24422 * 8 7 5 41 41 H 1.08993 * 109.47182 * 305.00191 * 9 5 4 42 42 H 1.09001 * 109.47123 * 65.00130 * 9 5 4 43 43 H 0.97001 * 119.99535 * 354.98312 * 12 10 9 44 44 H 1.07997 * 119.78968 * 359.97438 * 14 13 12 45 45 H 1.07995 * 119.83766 * 180.02562 * 15 14 13 46 46 H 1.08007 * 120.05549 * 179.97438 * 16 15 14 47 47 H 0.96992 * 119.99963 * 179.97438 * 21 20 18 48 48 H 1.08000 * 120.15586 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8793 0.1275 6 1 3.6514 3.3397 1.0177 7 6 3.6660 3.6786 -1.1097 8 6 4.2968 3.0532 -2.3554 9 6 5.6057 2.8708 0.2421 10 6 6.0987 4.2730 0.4900 11 8 5.3077 5.1891 0.5679 12 7 7.4187 4.5093 0.6252 13 6 7.8853 5.8226 0.7504 14 6 8.9914 6.0941 1.5523 15 6 9.4619 7.3901 1.6829 16 6 8.8410 8.4250 1.0202 17 6 7.7224 8.1659 0.2064 18 6 7.0798 9.2236 -0.4777 19 1 6.5872 9.0365 -1.4204 20 6 7.0822 10.5126 0.0668 21 7 7.4596 10.6987 1.3057 22 14 6.5466 11.9676 -0.9750 23 1 5.1094 12.2497 -0.7298 24 1 7.3540 13.1600 -0.6124 25 1 6.7506 11.6499 -2.4112 26 6 7.2512 6.8477 0.0734 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 1.0088 -0.9309 35 1 3.9330 0.8524 0.8421 36 1 4.0072 4.7087 -1.0077 37 1 2.5803 3.6633 -1.2055 38 1 5.3823 3.0646 -2.2577 39 1 4.0053 3.6252 -3.2363 40 1 3.9521 2.0245 -2.4598 41 1 5.9042 2.2289 1.0708 42 1 6.0375 2.4923 -0.6844 43 1 8.0453 3.7689 0.6357 44 1 9.4853 5.2888 2.0757 45 1 10.3205 7.5897 2.3068 46 1 9.2112 9.4342 1.1254 47 1 7.4616 11.5923 1.6830 48 1 6.3965 6.6375 -0.5524 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521754432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:12 Heat of formation + Delta-G solvation = -56.187754 kcal Electronic energy + Delta-G solvation = -24534.009398 eV Core-core repulsion = 21166.023908 eV Total energy + Delta-G solvation = -3367.985490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.92236 -37.89461 -36.80141 -34.60011 -34.20712 -32.96749 -30.27332 -29.78611 -29.72079 -27.77537 -25.32739 -25.05720 -23.62729 -21.85462 -21.13249 -20.77072 -19.55788 -18.89206 -17.59992 -16.57792 -16.08922 -15.66162 -15.39015 -15.01445 -14.61351 -14.56553 -14.22128 -13.87201 -13.63149 -13.11806 -12.99351 -12.80503 -12.71515 -12.52902 -12.24546 -12.06749 -11.89519 -11.58466 -11.47608 -11.36889 -11.28702 -11.06366 -10.92975 -10.75121 -10.62733 -10.50187 -10.38790 -10.37042 -10.24012 -10.03556 -9.68567 -9.32518 -9.03750 -8.80682 -7.37396 -6.85272 -6.64164 -4.30819 2.66345 2.87702 3.12439 3.17350 3.22045 3.43091 3.70972 4.01610 4.58331 4.70619 4.72707 4.79476 4.95158 5.00848 5.07006 5.23859 5.35669 5.44425 5.46394 5.55331 5.59975 5.61249 5.69120 5.71233 5.74863 5.81791 5.83918 5.94635 6.01636 6.07332 6.18697 6.24076 6.26318 6.36830 6.40480 6.48437 6.67114 6.85729 7.05073 7.09292 7.11040 7.29526 7.60526 7.76760 7.99732 8.12418 8.22826 8.31665 8.68252 8.81840 8.98690 9.02007 10.31373 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.003031 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.158775 B = 9236.186802 C =10298.812176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.070 4.070 6 H 0.077 0.923 7 C -0.129 4.129 8 C -0.154 4.154 9 C -0.139 4.139 10 C 0.501 3.499 11 O -0.511 6.511 12 N -0.673 5.673 13 C 0.151 3.849 14 C -0.259 4.259 15 C -0.094 4.094 16 C -0.167 4.167 17 C 0.120 3.880 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.802 5.802 22 Si 0.909 3.091 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.205 4.205 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.397 0.603 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.278 0.722 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 -17.652 -2.950 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.154 4.154 5 C -0.089 4.089 6 H 0.096 0.904 7 C -0.166 4.166 8 C -0.211 4.211 9 C -0.179 4.179 10 C 0.288 3.712 11 O -0.385 6.385 12 N -0.317 5.317 13 C 0.059 3.941 14 C -0.280 4.280 15 C -0.114 4.114 16 C -0.186 4.186 17 C 0.117 3.883 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.428 5.428 22 Si 0.734 3.266 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.227 4.227 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.230 0.770 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.628 -16.826 -2.741 18.291 hybrid contribution 0.140 0.290 -0.197 0.378 sum -6.488 -16.536 -2.938 18.005 Atomic orbital electron populations 1.21784 0.96123 1.01315 1.01866 1.21541 0.95680 0.97265 1.01723 1.21651 0.95482 0.96292 1.02406 1.21702 0.95495 0.96351 1.01869 1.20909 0.92784 0.95300 0.99881 0.90423 1.21698 1.00160 1.01467 0.93285 1.21889 1.00848 1.00341 0.98067 1.21825 0.97896 0.94575 1.03614 1.20679 0.82251 0.91236 0.77008 1.90732 1.54253 1.45839 1.47716 1.43551 1.07490 1.07876 1.72795 1.17452 0.96012 0.82606 0.98048 1.20073 1.03170 0.96462 1.08326 1.20473 0.98836 0.92664 0.99379 1.21309 0.96959 0.98020 1.02344 1.17504 0.89607 0.91127 0.90045 1.19505 1.30877 0.92172 1.06506 0.90602 1.25862 0.93407 1.00272 0.94658 1.69814 1.36542 1.23929 1.12502 0.86292 0.79130 0.80108 0.81111 1.19635 1.20151 1.18544 1.20974 1.02734 0.92732 1.06242 0.93040 0.92762 0.92791 0.92254 0.92245 0.91990 0.91663 0.91651 0.92248 0.89561 0.92251 0.92860 0.93099 0.92939 0.89486 0.88841 0.76989 0.89346 0.89066 0.86574 0.91077 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -1.07 4.83 -26.73 -0.13 -1.20 16 4 C -0.12 -1.06 4.49 -26.73 -0.12 -1.18 16 5 C -0.07 -0.83 1.82 -90.62 -0.16 -0.99 16 6 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 7 C -0.13 -1.68 5.21 -26.73 -0.14 -1.82 16 8 C -0.15 -1.74 9.22 37.16 0.34 -1.40 16 9 C -0.14 -1.65 4.93 -27.89 -0.14 -1.79 16 10 C 0.50 8.73 7.28 -10.99 -0.08 8.65 16 11 O -0.51 -11.24 11.72 5.55 0.07 -11.18 16 12 N -0.67 -11.91 5.34 -9.91 -0.05 -11.96 16 13 C 0.15 3.43 6.25 -83.77 -0.52 2.90 16 14 C -0.26 -5.76 9.97 -39.10 -0.39 -6.15 16 15 C -0.09 -2.23 10.02 -39.69 -0.40 -2.63 16 16 C -0.17 -4.43 8.65 -38.84 -0.34 -4.76 16 17 C 0.12 3.34 5.52 -106.85 -0.59 2.75 16 18 C -0.46 -12.80 9.05 -37.74 -0.34 -13.14 16 19 H 0.08 2.05 7.88 -52.49 -0.41 1.64 16 20 C 0.07 1.95 5.21 -17.34 -0.09 1.86 16 21 N -0.80 -21.61 11.02 55.55 0.61 -20.99 16 22 Si 0.91 19.50 29.58 -169.99 -5.03 14.47 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.21 -5.36 8.39 -38.68 -0.32 -5.68 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 6.77 -51.93 -0.35 0.25 16 34 H 0.06 0.56 6.24 -51.93 -0.32 0.23 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.46 5.98 -51.93 -0.31 1.15 16 37 H 0.06 0.72 6.60 -51.93 -0.34 0.38 16 38 H 0.05 0.61 6.28 -51.93 -0.33 0.29 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.50 6.38 -51.93 -0.33 0.16 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.95 6.13 -51.93 -0.32 0.63 16 43 H 0.40 5.36 8.82 -40.82 -0.36 5.00 16 44 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 46 H 0.12 3.17 6.38 -52.48 -0.33 2.83 16 47 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 48 H 0.11 2.82 6.49 -52.49 -0.34 2.48 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -30.73 375.24 -9.91 -40.64 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.95 Total: 9.79 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -3.21 Total: -26.43 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.56 Total: -32.95 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.73 -9.91 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521754432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.543 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds