Wall clock time and date at job start Tue Mar 31 2020 09:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 C 1.53001 * 109.46638 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47029 * 185.04616 * 4 3 2 6 6 H 1.09001 * 109.47331 * 55.45648 * 5 4 3 7 7 C 1.53001 * 109.47272 * 295.45923 * 5 4 3 8 8 C 1.53001 * 109.46958 * 298.56620 * 7 5 4 9 9 C 1.52997 * 109.47389 * 175.45787 * 5 4 3 10 10 C 1.50697 * 109.47464 * 185.00104 * 9 5 4 11 11 O 1.21287 * 119.99986 * 0.02562 * 10 9 5 12 12 N 1.34773 * 120.00501 * 180.02562 * 10 9 5 13 13 C 1.39934 * 120.00694 * 174.98789 * 12 10 9 14 14 C 1.39288 * 119.95030 * 145.71281 * 13 12 10 15 15 C 1.38494 * 120.43084 * 179.97438 * 14 13 12 16 16 C 1.37685 * 120.31600 * 359.97438 * 15 14 13 17 17 C 1.40739 * 119.89018 * 0.02562 * 16 15 14 18 18 C 1.41409 * 120.21055 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99792 * 149.92069 * 18 17 16 20 20 C 1.39925 * 119.99970 * 329.91481 * 18 17 16 21 21 N 1.30840 * 120.00239 * 347.67874 * 20 18 17 22 22 Si 1.86800 * 120.00032 * 167.68185 * 20 18 17 23 23 H 1.48496 * 109.47455 * 94.98285 * 22 20 18 24 24 H 1.48505 * 109.47103 * 214.98340 * 22 20 18 25 25 H 1.48500 * 109.47076 * 334.97880 * 22 20 18 26 26 C 1.38247 * 119.94524 * 325.44195 * 13 12 10 27 27 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47479 * 300.00494 * 1 2 3 29 29 H 1.09005 * 109.46829 * 60.00207 * 1 2 3 30 30 H 1.09000 * 109.46871 * 239.99958 * 2 1 3 31 31 H 1.08996 * 109.46899 * 120.00021 * 2 1 3 32 32 H 1.08997 * 109.46837 * 60.00202 * 3 2 1 33 33 H 1.08996 * 109.47304 * 299.99773 * 3 2 1 34 34 H 1.09000 * 109.46952 * 65.04999 * 4 3 2 35 35 H 1.08994 * 109.47721 * 305.04950 * 4 3 2 36 36 H 1.08996 * 109.47457 * 178.56255 * 7 5 4 37 37 H 1.09005 * 109.47067 * 58.56598 * 7 5 4 38 38 H 1.08992 * 109.46921 * 300.23927 * 8 7 5 39 39 H 1.09003 * 109.46776 * 180.24048 * 8 7 5 40 40 H 1.09001 * 109.47055 * 60.24422 * 8 7 5 41 41 H 1.08993 * 109.47182 * 305.00191 * 9 5 4 42 42 H 1.09001 * 109.47123 * 65.00130 * 9 5 4 43 43 H 0.97001 * 119.99535 * 354.98312 * 12 10 9 44 44 H 1.07997 * 119.78968 * 359.97438 * 14 13 12 45 45 H 1.07995 * 119.83766 * 180.02562 * 15 14 13 46 46 H 1.08007 * 120.05549 * 179.97438 * 16 15 14 47 47 H 0.96992 * 119.99963 * 179.97438 * 21 20 18 48 48 H 1.08000 * 120.15586 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8793 0.1275 6 1 3.6514 3.3397 1.0177 7 6 3.6660 3.6786 -1.1097 8 6 4.2968 3.0532 -2.3554 9 6 5.6057 2.8708 0.2421 10 6 6.0987 4.2730 0.4900 11 8 5.3077 5.1891 0.5679 12 7 7.4187 4.5093 0.6252 13 6 7.8853 5.8226 0.7504 14 6 8.9914 6.0941 1.5523 15 6 9.4619 7.3901 1.6829 16 6 8.8410 8.4250 1.0202 17 6 7.7224 8.1659 0.2064 18 6 7.0798 9.2236 -0.4777 19 1 6.5872 9.0365 -1.4204 20 6 7.0822 10.5126 0.0668 21 7 7.4596 10.6987 1.3057 22 14 6.5466 11.9676 -0.9750 23 1 5.1094 12.2497 -0.7298 24 1 7.3540 13.1600 -0.6124 25 1 6.7506 11.6499 -2.4112 26 6 7.2512 6.8477 0.0734 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 1.0088 -0.9309 35 1 3.9330 0.8524 0.8421 36 1 4.0072 4.7087 -1.0077 37 1 2.5803 3.6633 -1.2055 38 1 5.3823 3.0646 -2.2577 39 1 4.0053 3.6252 -3.2363 40 1 3.9521 2.0245 -2.4598 41 1 5.9042 2.2289 1.0708 42 1 6.0375 2.4923 -0.6844 43 1 8.0453 3.7689 0.6357 44 1 9.4853 5.2888 2.0757 45 1 10.3205 7.5897 2.3068 46 1 9.2112 9.4342 1.1254 47 1 7.4616 11.5923 1.6830 48 1 6.3965 6.6375 -0.5524 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521754432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:11 Heat of formation + Delta-G solvation = -72.216923 kcal Electronic energy + Delta-G solvation = -24534.704475 eV Core-core repulsion = 21166.023908 eV Total energy + Delta-G solvation = -3368.680567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36809 -39.35149 -38.15118 -36.15017 -35.19433 -34.79538 -31.75123 -31.35965 -30.72628 -29.27169 -27.26108 -26.11553 -24.46780 -23.33864 -22.73343 -21.94903 -21.05893 -19.97833 -19.38986 -17.99298 -17.39525 -16.98747 -16.77533 -16.56139 -16.42812 -15.58800 -15.28799 -15.16997 -14.90711 -14.65218 -14.42501 -14.08659 -13.65581 -13.61959 -13.57255 -13.40219 -13.13348 -13.00841 -12.85617 -12.77394 -12.52893 -12.24550 -12.22233 -12.07077 -11.94784 -11.69757 -11.54922 -11.49336 -11.37631 -11.29836 -11.16189 -11.08944 -10.74378 -10.45682 -9.35553 -8.70247 -8.59664 -6.39203 0.88443 0.99408 1.34250 1.45318 1.49932 1.88074 2.20073 2.33577 2.74979 3.71482 3.75872 3.76971 3.95622 4.15087 4.21216 4.28772 4.38263 4.45509 4.54179 4.61814 4.61975 4.64972 4.66961 4.71994 4.90043 4.93485 4.98230 5.05080 5.08803 5.10169 5.12827 5.13485 5.19111 5.25465 5.25721 5.32244 5.32596 5.37029 5.47701 5.52352 5.58201 5.70816 5.78684 5.86319 6.06242 6.10620 6.36366 6.68176 6.72318 6.93636 7.00571 7.44213 8.37206 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.003031 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.158775 B = 9236.186802 C =10298.812176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.106 4.106 5 C -0.068 4.068 6 H 0.051 0.949 7 C -0.128 4.128 8 C -0.149 4.149 9 C -0.126 4.126 10 C 0.495 3.505 11 O -0.563 6.563 12 N -0.663 5.663 13 C 0.158 3.842 14 C -0.248 4.248 15 C -0.094 4.094 16 C -0.193 4.193 17 C 0.087 3.913 18 C -0.504 4.504 19 H 0.064 0.936 20 C 0.032 3.968 21 N -0.834 5.834 22 Si 0.984 3.016 23 H -0.267 1.267 24 H -0.259 1.259 25 H -0.259 1.259 26 C -0.231 4.231 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.421 0.579 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.287 0.713 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 -20.573 -2.833 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.144 4.144 5 C -0.087 4.087 6 H 0.069 0.931 7 C -0.166 4.166 8 C -0.206 4.206 9 C -0.165 4.165 10 C 0.285 3.715 11 O -0.440 6.440 12 N -0.309 5.309 13 C 0.064 3.936 14 C -0.269 4.269 15 C -0.113 4.113 16 C -0.213 4.213 17 C 0.085 3.915 18 C -0.534 4.534 19 H 0.083 0.917 20 C -0.181 4.181 21 N -0.461 5.461 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.183 1.183 25 H -0.183 1.183 26 C -0.252 4.252 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.259 0.741 44 H 0.151 0.849 45 H 0.141 0.859 46 H 0.118 0.882 47 H 0.097 0.903 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.891 -19.809 -2.618 20.832 hybrid contribution -0.089 1.064 -0.170 1.082 sum -5.981 -18.745 -2.789 19.872 Atomic orbital electron populations 1.21803 0.96122 1.01840 1.01542 1.21514 0.95712 0.96202 1.02410 1.21643 0.95585 0.97160 1.01532 1.21635 0.95334 0.94029 1.03357 1.20878 0.92931 0.96928 0.97917 0.93081 1.21625 1.00452 0.99260 0.95258 1.21858 1.00587 1.01568 0.96609 1.21893 0.97539 0.90841 1.06257 1.21797 0.81490 0.93070 0.75191 1.90737 1.55537 1.48137 1.49614 1.43502 1.08404 1.06587 1.72447 1.17545 0.95427 0.84228 0.96395 1.20527 1.02262 0.97095 1.06979 1.20857 0.99232 0.92589 0.98597 1.21264 0.97642 0.98336 1.04012 1.17858 0.90524 0.92043 0.91095 1.19711 1.32834 0.93940 1.06911 0.91748 1.26725 0.93028 1.02576 0.95779 1.69866 1.37342 1.25053 1.13827 0.85185 0.78867 0.76449 0.79104 1.19162 1.18347 1.18308 1.20934 1.03064 0.93586 1.07664 0.92084 0.93256 0.93034 0.91362 0.91670 0.93244 0.92349 0.90056 0.90621 0.94344 0.92002 0.92943 0.93717 0.90220 0.85893 0.86123 0.74082 0.84933 0.85903 0.88189 0.90272 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.12 -1.55 5.93 30.60 0.18 -1.37 16 3 C -0.12 -1.95 4.83 30.60 0.15 -1.80 16 4 C -0.11 -1.61 4.49 30.59 0.14 -1.47 16 5 C -0.07 -1.52 1.82 -10.80 -0.02 -1.54 16 6 H 0.05 1.43 7.95 -2.39 -0.02 1.41 16 7 C -0.13 -3.40 5.21 30.59 0.16 -3.24 16 8 C -0.15 -3.16 9.22 71.98 0.66 -2.50 16 9 C -0.13 -2.65 4.93 29.85 0.15 -2.50 16 10 C 0.49 16.96 7.28 87.66 0.64 17.60 16 11 O -0.56 -25.91 11.72 -3.05 -0.04 -25.95 16 12 N -0.66 -22.31 5.34 -303.66 -1.62 -23.93 16 13 C 0.16 7.11 6.25 38.10 0.24 7.35 16 14 C -0.25 -10.47 9.97 22.58 0.23 -10.24 16 15 C -0.09 -4.36 10.02 22.20 0.22 -4.14 16 16 C -0.19 -10.58 8.65 22.75 0.20 -10.39 16 17 C 0.09 5.14 5.52 -21.31 -0.12 5.02 16 18 C -0.50 -29.85 9.05 23.46 0.21 -29.63 16 19 H 0.06 3.77 7.88 -2.91 -0.02 3.75 16 20 C 0.03 1.75 5.21 85.25 0.44 2.20 16 21 N -0.83 -46.69 11.02 21.82 0.24 -46.45 16 22 Si 0.98 41.37 29.58 68.60 2.03 43.39 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 26 C -0.23 -12.62 8.39 22.85 0.19 -12.43 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.01 6.77 -2.39 -0.02 0.99 16 34 H 0.08 1.02 6.24 -2.39 -0.01 1.00 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 1.40 5.98 -2.39 -0.01 1.38 16 37 H 0.06 1.55 6.60 -2.38 -0.02 1.53 16 38 H 0.05 1.11 6.28 -2.39 -0.02 1.09 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.25 6.38 -2.39 -0.02 1.24 16 41 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.12 1.97 6.13 -2.39 -0.01 1.96 16 43 H 0.42 9.86 8.82 -92.71 -0.82 9.05 16 44 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 46 H 0.10 5.71 6.38 -2.91 -0.02 5.69 16 47 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16 48 H 0.08 4.86 6.49 -2.91 -0.02 4.84 16 Total: -1.00 -73.17 375.24 5.12 -68.04 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.13 Total: 35.27 kcal Atomic # 6 Polarization: -54.77 SS G_CDS: 4.38 Total: -50.38 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.38 Total: -70.38 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.04 Total: -25.95 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -73.17 5.12 -68.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521754432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.173 kcal (2) G-P(sol) polarization free energy of solvation -73.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds