Wall clock time and date at job start Tue Mar 31 2020 08:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 C 1.52997 * 109.47032 * 120.00395 * 2 1 3 5 5 C 1.52999 * 109.47275 * 299.99800 * 4 2 1 6 6 C 1.53000 * 109.47032 * 180.02562 * 4 2 1 7 7 C 1.52998 * 109.47215 * 59.99981 * 4 2 1 8 8 N 1.46497 * 109.47302 * 180.02562 * 7 4 2 9 9 C 1.34783 * 120.00082 * 180.02562 * 8 7 4 10 10 O 1.21274 * 120.00070 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99628 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47499 * 322.43547 * 11 9 8 13 13 C 1.50702 * 109.47219 * 82.44206 * 11 9 8 14 14 H 1.07997 * 120.00147 * 54.76970 * 13 11 9 15 15 C 1.37883 * 119.99750 * 234.78100 * 13 11 9 16 16 N 1.31517 * 119.99994 * 175.91288 * 15 13 11 17 17 Si 1.86801 * 119.99984 * 355.90607 * 15 13 11 18 18 H 1.48501 * 109.46863 * 83.73832 * 17 15 13 19 19 H 1.48496 * 109.47188 * 203.73574 * 17 15 13 20 20 H 1.48496 * 109.46949 * 323.73543 * 17 15 13 21 21 C 1.50700 * 109.46779 * 202.43722 * 11 9 8 22 22 C 1.38234 * 119.99828 * 112.26656 * 21 11 9 23 23 C 1.38245 * 119.99675 * 179.97438 * 22 21 11 24 24 C 1.38228 * 119.99975 * 359.95388 * 23 22 21 25 25 C 1.38237 * 120.00308 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99855 * 0.06917 * 25 24 23 27 27 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47037 * 299.99946 * 1 2 3 29 29 H 1.09004 * 109.46958 * 59.99636 * 1 2 3 30 30 H 1.09003 * 109.46581 * 240.00192 * 2 1 3 31 31 H 1.09001 * 109.47203 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47567 * 300.00584 * 3 2 1 33 33 H 1.09002 * 109.46936 * 60.00012 * 3 2 1 34 34 H 1.08991 * 109.47591 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.46659 * 300.00696 * 5 4 2 36 36 H 1.09001 * 109.46769 * 59.99876 * 5 4 2 37 37 H 1.09002 * 109.47098 * 299.99716 * 6 4 2 38 38 H 1.08994 * 109.47542 * 59.99693 * 6 4 2 39 39 H 1.09001 * 109.47269 * 180.02562 * 6 4 2 40 40 H 1.09002 * 109.47303 * 60.00045 * 7 4 2 41 41 H 1.09001 * 109.47003 * 300.00230 * 7 4 2 42 42 H 0.97002 * 120.00172 * 359.97438 * 8 7 4 43 43 H 0.96994 * 120.00132 * 179.97438 * 16 15 13 44 44 H 1.07992 * 120.00341 * 359.97438 * 22 21 11 45 45 H 1.08004 * 119.99417 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.99490 * 179.72107 * 24 23 22 47 47 H 1.07997 * 119.99922 * 179.97438 * 25 24 23 48 48 H 1.07995 * 120.00177 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -0.0002 2.4985 6 6 3.5700 -0.7208 1.2495 7 6 1.5300 -2.1638 1.2491 8 7 2.0178 -2.8543 2.4455 9 6 1.6925 -4.1449 2.6585 10 8 0.9956 -4.7343 1.8600 11 6 2.1948 -4.8552 3.8889 12 1 3.2113 -4.5283 4.1078 13 6 1.3000 -4.5302 5.0572 14 1 0.2365 -4.7050 4.9879 15 6 1.8391 -4.0093 6.2144 16 7 1.0504 -3.6506 7.2039 17 14 3.6897 -3.8134 6.3770 18 1 4.1097 -2.5373 5.7443 19 1 4.0615 -3.7990 7.8146 20 1 4.3687 -4.9481 5.7014 21 6 2.1864 -6.3429 3.6486 22 6 3.3793 -7.0366 3.5670 23 6 3.3716 -8.4014 3.3471 24 6 2.1710 -9.0725 3.2096 25 6 0.9780 -8.3791 3.2927 26 6 0.9857 -7.0142 3.5117 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.8929 -0.5142 3.3884 35 1 1.8933 1.0275 2.4984 36 1 0.4400 -0.0001 2.4984 37 1 3.9337 -1.2343 0.3595 38 1 3.9330 0.3069 1.2497 39 1 3.9333 -1.2351 2.1392 40 1 1.8933 -2.6776 0.3591 41 1 0.4400 -2.1638 1.2490 42 1 2.5755 -2.3830 3.0840 43 1 1.4296 -3.2845 8.0181 44 1 4.3173 -6.5124 3.6751 45 1 4.3037 -8.9432 3.2829 46 1 2.1652 -10.1380 3.0333 47 1 0.0401 -8.9034 3.1849 48 1 0.0538 -6.4724 3.5762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538857880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:05 Heat of formation + Delta-G solvation = -55.884763 kcal Electronic energy + Delta-G solvation = -25693.678572 eV Core-core repulsion = 22325.706220 eV Total energy + Delta-G solvation = -3367.972352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15851 -40.01875 -39.01302 -35.50453 -35.16041 -33.38292 -31.93705 -31.62516 -29.72750 -28.90153 -28.08001 -26.65764 -25.31585 -23.44052 -23.31444 -22.22317 -21.04850 -19.25307 -19.04769 -17.97445 -17.67272 -16.88735 -16.48580 -16.24501 -15.78782 -15.74584 -15.46154 -15.23189 -14.86227 -14.65532 -14.60713 -14.30387 -14.12747 -13.78194 -13.70527 -13.41543 -13.16930 -12.94993 -12.86292 -12.78547 -12.74594 -12.66751 -12.20433 -12.05709 -12.01765 -11.92783 -11.70321 -11.43392 -11.33749 -11.26441 -11.21593 -10.90756 -10.56011 -9.90605 -9.64195 -9.37577 -8.36451 -6.45119 0.63348 0.70457 1.30480 1.37536 1.46098 1.90355 2.28445 2.47726 2.98979 3.15948 3.67928 3.77468 3.84753 4.06618 4.22215 4.25161 4.27569 4.32149 4.38961 4.41648 4.43671 4.47255 4.65759 4.72201 4.76493 4.81246 4.83748 4.89140 4.89877 5.00342 5.01016 5.07641 5.11598 5.16639 5.18783 5.20682 5.29529 5.32743 5.37851 5.39802 5.57847 5.63019 5.66451 5.69764 5.74921 5.94950 6.19240 6.30925 6.57270 6.70095 7.18538 7.46809 8.79118 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.004866 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.609617 B = 5752.386879 C = 6810.306187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 C -0.145 4.145 4 C -0.063 4.063 5 C -0.147 4.147 6 C -0.144 4.144 7 C 0.130 3.870 8 N -0.720 5.720 9 C 0.525 3.475 10 O -0.590 6.590 11 C 0.035 3.965 12 H 0.072 0.928 13 C -0.504 4.504 14 H 0.028 0.972 15 C 0.030 3.970 16 N -0.932 5.932 17 Si 0.927 3.073 18 H -0.241 1.241 19 H -0.285 1.285 20 H -0.244 1.244 21 C -0.063 4.063 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.101 4.101 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.403 0.597 43 H 0.271 0.729 44 H 0.126 0.874 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.132 0.868 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 5.561 -12.241 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.096 4.096 3 C -0.202 4.202 4 C -0.064 4.064 5 C -0.204 4.204 6 C -0.201 4.201 7 C 0.007 3.993 8 N -0.372 5.372 9 C 0.314 3.686 10 O -0.471 6.471 11 C 0.013 3.987 12 H 0.090 0.910 13 C -0.541 4.541 14 H 0.047 0.953 15 C -0.170 4.170 16 N -0.570 5.570 17 Si 0.749 3.251 18 H -0.165 1.165 19 H -0.211 1.211 20 H -0.167 1.167 21 C -0.064 4.064 22 C -0.164 4.164 23 C -0.142 4.142 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.119 4.119 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.239 0.761 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.169 0.831 46 H 0.169 0.831 47 H 0.150 0.850 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.630 5.257 -12.632 15.666 hybrid contribution 0.005 0.326 1.060 1.109 sum 7.634 5.583 -11.572 14.945 Atomic orbital electron populations 1.21989 0.95660 1.01293 1.02288 1.21028 0.95481 0.97060 0.96057 1.21913 1.01611 0.94446 1.02268 1.20765 0.96733 0.92037 0.96817 1.21993 1.01113 1.01074 0.96208 1.21948 0.93201 1.03087 1.01856 1.21469 0.98215 0.92620 0.87017 1.45966 1.54006 1.11605 1.25609 1.21347 0.79068 0.82154 0.86047 1.90533 1.40315 1.67701 1.48522 1.18285 0.98146 0.90257 0.92018 0.90987 1.20467 0.93337 1.43185 0.97138 0.95347 1.25906 1.03198 0.93288 0.94623 1.70011 1.37812 1.42472 1.06693 0.86023 0.79653 0.81170 0.78296 1.16472 1.21089 1.16733 1.20043 0.93827 0.95925 0.96589 1.21274 0.96930 0.95815 1.02413 1.21376 0.99268 0.93560 0.99953 1.21365 0.91810 1.00857 1.01119 1.21353 0.99613 0.93483 1.00986 1.20840 0.97245 0.94888 0.98946 0.93987 0.92488 0.91445 0.90778 0.91557 0.91869 0.92282 0.94119 0.90088 0.93025 0.92042 0.90093 0.93456 0.92494 0.93455 0.76120 0.91929 0.85634 0.83090 0.83099 0.84995 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.49 71.98 0.61 -2.56 16 2 C -0.08 -1.47 2.28 -10.80 -0.02 -1.50 16 3 C -0.15 -2.16 8.49 71.98 0.61 -1.55 16 4 C -0.06 -1.47 0.33 -52.18 -0.02 -1.48 16 5 C -0.15 -3.62 7.59 71.98 0.55 -3.07 16 6 C -0.14 -2.92 7.95 71.98 0.57 -2.34 16 7 C 0.13 4.12 4.21 86.38 0.36 4.49 16 8 N -0.72 -27.08 4.96 -463.07 -2.30 -29.38 16 9 C 0.53 24.25 6.93 87.66 0.61 24.85 16 10 O -0.59 -30.30 15.23 -3.01 -0.05 -30.35 16 11 C 0.03 1.64 2.22 -13.03 -0.03 1.61 16 12 H 0.07 3.13 4.57 -2.39 -0.01 3.12 16 13 C -0.50 -28.16 8.24 25.60 0.21 -27.95 16 14 H 0.03 1.84 7.69 -2.91 -0.02 1.82 16 15 C 0.03 1.63 5.47 84.66 0.46 2.09 16 16 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 17 Si 0.93 39.66 26.93 68.60 1.85 41.51 16 18 H -0.24 -9.12 7.11 99.48 0.71 -8.41 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.24 -9.72 6.81 99.48 0.68 -9.05 16 21 C -0.06 -2.89 4.53 -19.87 -0.09 -2.98 16 22 C -0.15 -5.62 9.67 22.27 0.22 -5.40 16 23 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 24 C -0.13 -4.21 10.05 22.27 0.22 -3.98 16 25 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 26 C -0.10 -4.67 8.05 22.27 0.18 -4.49 16 27 H 0.04 1.01 6.43 -2.39 -0.02 0.99 16 28 H 0.06 1.19 6.43 -2.39 -0.02 1.17 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.89 6.43 -2.39 -0.02 0.87 16 34 H 0.04 1.16 6.86 -2.39 -0.02 1.14 16 35 H 0.08 1.60 6.43 -2.39 -0.02 1.59 16 36 H 0.05 1.36 6.43 -2.39 -0.02 1.34 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.31 6.43 -2.39 -0.02 1.29 16 39 H 0.05 1.05 6.86 -2.39 -0.02 1.04 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 1.67 6.43 -2.39 -0.02 1.66 16 42 H 0.40 14.06 6.16 -92.71 -0.57 13.49 16 43 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 44 H 0.13 4.29 7.96 -2.91 -0.02 4.27 16 45 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 46 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 47 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 48 H 0.08 4.38 7.44 -2.91 -0.02 4.36 16 Total: -1.00 -69.63 368.86 5.04 -64.59 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: 0.35 Total: 41.63 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 4.89 Total: -32.86 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.00 Total: -84.51 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.85 Total: 41.51 kcal Total: -69.63 5.04 -64.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538857880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.705 kcal (2) G-P(sol) polarization free energy of solvation -69.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds