Wall clock time and date at job start Tue Mar 31 2020 08:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46845 * 2 1 4 4 C 1.38293 * 120.00794 * 90.00009 * 3 2 1 5 5 C 1.37973 * 119.95552 * 179.87318 * 4 3 2 6 6 C 1.39144 * 120.21556 * 0.26685 * 5 4 3 7 7 C 1.38370 * 119.69587 * 359.62808 * 6 5 4 8 8 C 1.38107 * 120.00868 * 269.98284 * 3 2 1 9 9 C 1.50775 * 121.40187 * 179.89033 * 7 6 5 10 10 H 1.08993 * 109.43148 * 258.09810 * 9 7 6 11 11 N 1.46901 * 109.43160 * 138.23391 * 9 7 6 12 12 C 1.46902 * 110.99893 * 155.00233 * 11 9 7 13 13 C 1.53000 * 109.47228 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.46684 * 304.99251 * 13 12 11 15 15 C 1.52994 * 109.47459 * 64.99737 * 13 12 11 16 16 C 1.53003 * 109.46957 * 184.99797 * 13 12 11 17 17 C 1.50703 * 109.47104 * 174.99575 * 16 13 12 18 18 H 1.08002 * 119.99880 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00067 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47194 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47345 * 120.00203 * 21 19 17 24 24 H 1.48499 * 109.47419 * 240.00023 * 21 19 17 25 25 C 1.53066 * 109.68605 * 18.17105 * 9 7 6 26 26 C 1.53405 * 108.31254 * 311.81604 * 25 9 7 27 27 O 1.35855 * 118.49515 * 180.72505 * 6 5 4 28 28 H 1.08995 * 109.47814 * 60.00196 * 1 2 3 29 29 H 1.09004 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47175 * 299.99795 * 1 2 3 31 31 H 1.08996 * 109.46997 * 240.00354 * 2 1 3 32 32 H 1.08997 * 109.47087 * 119.99893 * 2 1 3 33 33 H 1.07997 * 120.02062 * 359.90026 * 4 3 2 34 34 H 1.08002 * 119.88813 * 179.97438 * 5 4 3 35 35 H 1.08007 * 119.83817 * 0.04664 * 8 3 2 36 36 H 1.00905 * 111.00231 * 278.95169 * 11 9 7 37 37 H 1.09004 * 109.46581 * 299.99764 * 12 11 9 38 38 H 1.09003 * 109.47245 * 59.99573 * 12 11 9 39 39 H 1.09006 * 109.46821 * 300.00061 * 15 13 12 40 40 H 1.08995 * 109.47537 * 59.99711 * 15 13 12 41 41 H 1.08996 * 109.47335 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47169 * 294.99902 * 16 13 12 43 43 H 1.09001 * 109.47079 * 54.99764 * 16 13 12 44 44 H 0.97002 * 120.00224 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.70137 * 71.52975 * 25 9 7 46 46 H 1.09001 * 109.69344 * 192.08089 * 25 9 7 47 47 H 1.09001 * 109.68063 * 184.40913 * 26 25 9 48 48 H 1.08991 * 109.68410 * 304.93608 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0729 1.1976 5 6 2.7251 3.3729 1.1963 6 6 2.9554 4.0331 -0.0067 7 6 2.7259 3.3773 -1.2034 8 6 2.2628 2.0720 -1.1959 9 6 2.9602 4.0565 -2.5289 10 1 2.0052 4.3739 -2.9475 11 7 3.6090 3.1158 -3.4521 12 6 3.3327 3.4747 -4.8496 13 6 4.0228 2.4743 -5.7790 14 1 5.0862 2.4330 -5.5431 15 6 3.4035 1.0885 -5.5869 16 6 3.8396 2.9178 -7.2319 17 6 4.6212 2.0026 -8.1388 18 1 5.1913 1.1860 -7.7208 19 6 4.6078 2.2071 -9.5022 20 7 3.9133 3.2012 -10.0113 21 14 5.5761 1.0723 -10.6265 22 1 6.2680 0.0411 -9.8121 23 1 4.6493 0.4111 -11.5799 24 1 6.5815 1.8628 -11.3812 25 6 3.8608 5.2781 -2.3303 26 6 3.3123 6.0950 -1.1534 27 8 3.4248 5.3073 0.0327 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0814 1.5648 2.1331 34 1 2.9044 3.8813 2.1322 35 1 2.0815 1.5606 -2.1299 36 1 4.6022 3.0679 -3.2807 37 1 2.2571 3.4507 -5.0249 38 1 3.7111 4.4773 -5.0489 39 1 3.5340 0.7726 -4.5519 40 1 2.3402 1.1298 -5.8228 41 1 3.8954 0.3758 -6.2488 42 1 2.7827 2.8739 -7.4947 43 1 4.2007 3.9397 -7.3481 44 1 3.9035 3.3448 -10.9705 45 1 4.8775 4.9531 -2.1098 46 1 3.8578 5.8874 -3.2341 47 1 3.8911 7.0118 -1.0415 48 1 2.2659 6.3412 -1.3334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560736025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:10 Heat of formation + Delta-G solvation = -44.545293 kcal Electronic energy + Delta-G solvation = -24817.837844 eV Core-core repulsion = 21450.357209 eV Total energy + Delta-G solvation = -3367.480635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84501 -38.03240 -37.22010 -34.84590 -33.67187 -32.46687 -30.78297 -30.54697 -29.01107 -26.86563 -25.71386 -24.57124 -23.83889 -22.83506 -22.34277 -21.67067 -19.82471 -18.95267 -17.78690 -16.79368 -16.40513 -15.89949 -15.39585 -14.87002 -14.73273 -14.49462 -14.34561 -14.24753 -13.80408 -13.64432 -13.42667 -13.16361 -12.94595 -12.70468 -12.55037 -12.15516 -12.04029 -11.93066 -11.52736 -11.43063 -11.36450 -11.08536 -10.97939 -10.88174 -10.84144 -10.73689 -10.48291 -10.30763 -10.23248 -9.73196 -9.17132 -8.97310 -8.78710 -8.34739 -8.18647 -8.04689 -5.99318 -4.00364 1.31041 1.42484 3.20031 3.30984 3.38771 3.42847 3.68573 4.26903 4.47253 4.52767 4.58648 4.69978 4.77904 4.89109 5.04079 5.06330 5.19994 5.28273 5.36481 5.37172 5.39856 5.42581 5.51607 5.53997 5.68688 5.74413 5.80222 5.83335 5.84838 5.92395 6.09777 6.12112 6.12421 6.25976 6.36270 6.51045 6.53157 6.64136 6.68228 6.79324 6.98301 7.15341 7.17184 7.30284 7.39322 7.57533 7.67676 7.82931 8.00849 8.44888 9.06263 9.63304 11.12239 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016997 B = 0.003100 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.908865 B = 9031.143573 C =10302.938793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.086 4.086 5 C -0.156 4.156 6 C 0.126 3.874 7 C -0.146 4.146 8 C -0.048 4.048 9 C 0.131 3.869 10 H 0.088 0.912 11 N -0.674 5.674 12 C 0.063 3.937 13 C -0.082 4.082 14 H 0.053 0.947 15 C -0.123 4.123 16 C 0.028 3.972 17 C -0.512 4.512 18 H 0.057 0.943 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.190 4.190 26 C 0.067 3.933 27 O -0.320 6.320 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.341 0.659 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.016 0.984 43 H 0.012 0.988 44 H 0.259 0.741 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 1.067 22.754 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.124 4.124 4 C -0.104 4.104 5 C -0.175 4.175 6 C 0.081 3.919 7 C -0.148 4.148 8 C -0.066 4.066 9 C 0.020 3.980 10 H 0.106 0.894 11 N -0.304 5.304 12 C -0.065 4.065 13 C -0.101 4.101 14 H 0.072 0.928 15 C -0.180 4.180 16 C -0.010 4.010 17 C -0.550 4.550 18 H 0.075 0.925 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.230 4.230 26 C -0.009 4.009 27 O -0.234 6.234 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.123 0.877 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.230 0.773 22.743 23.350 hybrid contribution 1.081 0.381 -1.151 1.624 sum -4.149 1.154 21.592 22.017 Atomic orbital electron populations 1.21756 0.95082 1.01461 1.02075 1.20453 0.95885 0.92663 1.02687 1.19815 1.02728 0.96775 0.93055 1.20748 0.98386 0.93647 0.97656 1.20462 1.05372 0.95594 0.96027 1.18750 0.95637 0.84161 0.93391 1.19811 1.05764 0.96132 0.93079 1.20880 0.94823 0.92941 0.97946 1.20294 0.97928 0.89357 0.90377 0.89443 1.60592 1.16742 1.49339 1.03707 1.22217 1.00810 0.97373 0.86101 1.21197 0.97938 0.94199 0.96759 0.92836 1.21586 0.99771 0.97126 0.99518 1.19120 0.97162 0.96254 0.88462 1.21273 1.28998 1.13410 0.91332 0.92513 1.25020 0.95711 0.95457 0.98385 1.69974 1.41519 1.30134 1.12068 0.86580 0.79912 0.80918 0.80862 1.19731 1.21069 1.21128 1.23008 1.01054 0.99181 0.99714 1.22889 1.01423 0.93326 0.83256 1.85973 1.77689 1.22146 1.37605 0.92475 0.92631 0.92862 0.90908 0.91465 0.85957 0.85711 0.84695 0.84050 0.91485 0.95628 0.93948 0.94167 0.92769 0.96574 0.96985 0.93157 0.90286 0.89616 0.87693 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.87 16 2 C -0.08 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C -0.12 -1.37 5.13 -104.65 -0.54 -1.91 16 4 C -0.09 -0.90 9.70 -39.66 -0.38 -1.28 16 5 C -0.16 -1.77 9.94 -39.34 -0.39 -2.16 16 6 C 0.13 1.59 6.47 -39.20 -0.25 1.33 16 7 C -0.15 -1.86 5.56 -104.44 -0.58 -2.44 16 8 C -0.05 -0.60 8.92 -39.53 -0.35 -0.95 16 9 C 0.13 1.61 2.60 -68.79 -0.18 1.43 16 10 H 0.09 1.10 7.80 -51.93 -0.40 0.70 16 11 N -0.67 -9.32 4.91 -107.87 -0.53 -9.85 16 12 C 0.06 1.03 4.87 -3.82 -0.02 1.01 16 13 C -0.08 -1.62 2.48 -90.62 -0.22 -1.85 16 14 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 15 C -0.12 -2.32 8.89 37.15 0.33 -1.99 16 16 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 17 C -0.51 -14.22 8.41 -34.44 -0.29 -14.51 16 18 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 21 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C -0.19 -2.05 5.46 -26.49 -0.14 -2.19 16 26 C 0.07 0.65 7.02 37.37 0.26 0.91 16 27 O -0.32 -3.91 10.28 -19.28 -0.20 -4.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 1.78 7.69 -52.48 -0.40 1.37 16 36 H 0.34 4.69 8.33 -39.29 -0.33 4.36 16 37 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 38 H 0.03 0.42 7.70 -51.93 -0.40 0.02 16 39 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 46 H 0.09 0.89 7.80 -51.93 -0.41 0.48 16 47 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -29.88 381.55 -10.58 -40.46 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.53 Total: 1.57 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -2.79 Total: -24.32 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.21 Total: -35.96 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.88 -10.58 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560736025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.087 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds