Wall clock time and date at job start Tue Mar 31 2020 08:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46845 * 2 1 4 4 C 1.38293 * 120.00794 * 90.00009 * 3 2 1 5 5 C 1.37973 * 119.95552 * 179.87318 * 4 3 2 6 6 C 1.39144 * 120.21556 * 0.26685 * 5 4 3 7 7 C 1.38370 * 119.69587 * 359.62808 * 6 5 4 8 8 C 1.38107 * 120.00868 * 269.98284 * 3 2 1 9 9 C 1.50775 * 121.40187 * 179.89033 * 7 6 5 10 10 H 1.08993 * 109.43148 * 258.09810 * 9 7 6 11 11 N 1.46901 * 109.43160 * 138.23391 * 9 7 6 12 12 C 1.46902 * 110.99893 * 155.00233 * 11 9 7 13 13 C 1.53000 * 109.47228 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.46684 * 304.99251 * 13 12 11 15 15 C 1.52994 * 109.47459 * 64.99737 * 13 12 11 16 16 C 1.53003 * 109.46957 * 184.99797 * 13 12 11 17 17 C 1.50703 * 109.47104 * 174.99575 * 16 13 12 18 18 H 1.08002 * 119.99880 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00067 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47194 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47345 * 120.00203 * 21 19 17 24 24 H 1.48499 * 109.47419 * 240.00023 * 21 19 17 25 25 C 1.53066 * 109.68605 * 18.17105 * 9 7 6 26 26 C 1.53405 * 108.31254 * 311.81604 * 25 9 7 27 27 O 1.35855 * 118.49515 * 180.72505 * 6 5 4 28 28 H 1.08995 * 109.47814 * 60.00196 * 1 2 3 29 29 H 1.09004 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47175 * 299.99795 * 1 2 3 31 31 H 1.08996 * 109.46997 * 240.00354 * 2 1 3 32 32 H 1.08997 * 109.47087 * 119.99893 * 2 1 3 33 33 H 1.07997 * 120.02062 * 359.90026 * 4 3 2 34 34 H 1.08002 * 119.88813 * 179.97438 * 5 4 3 35 35 H 1.08007 * 119.83817 * 0.04664 * 8 3 2 36 36 H 1.00905 * 111.00231 * 278.95169 * 11 9 7 37 37 H 1.09004 * 109.46581 * 299.99764 * 12 11 9 38 38 H 1.09003 * 109.47245 * 59.99573 * 12 11 9 39 39 H 1.09006 * 109.46821 * 300.00061 * 15 13 12 40 40 H 1.08995 * 109.47537 * 59.99711 * 15 13 12 41 41 H 1.08996 * 109.47335 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47169 * 294.99902 * 16 13 12 43 43 H 1.09001 * 109.47079 * 54.99764 * 16 13 12 44 44 H 0.97002 * 120.00224 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.70137 * 71.52975 * 25 9 7 46 46 H 1.09001 * 109.69344 * 192.08089 * 25 9 7 47 47 H 1.09001 * 109.68063 * 184.40913 * 26 25 9 48 48 H 1.08991 * 109.68410 * 304.93608 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0729 1.1976 5 6 2.7251 3.3729 1.1963 6 6 2.9554 4.0331 -0.0067 7 6 2.7259 3.3773 -1.2034 8 6 2.2628 2.0720 -1.1959 9 6 2.9602 4.0565 -2.5289 10 1 2.0052 4.3739 -2.9475 11 7 3.6090 3.1158 -3.4521 12 6 3.3327 3.4747 -4.8496 13 6 4.0228 2.4743 -5.7790 14 1 5.0862 2.4330 -5.5431 15 6 3.4035 1.0885 -5.5869 16 6 3.8396 2.9178 -7.2319 17 6 4.6212 2.0026 -8.1388 18 1 5.1913 1.1860 -7.7208 19 6 4.6078 2.2071 -9.5022 20 7 3.9133 3.2012 -10.0113 21 14 5.5761 1.0723 -10.6265 22 1 6.2680 0.0411 -9.8121 23 1 4.6493 0.4111 -11.5799 24 1 6.5815 1.8628 -11.3812 25 6 3.8608 5.2781 -2.3303 26 6 3.3123 6.0950 -1.1534 27 8 3.4248 5.3073 0.0327 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0814 1.5648 2.1331 34 1 2.9044 3.8813 2.1322 35 1 2.0815 1.5606 -2.1299 36 1 4.6022 3.0679 -3.2807 37 1 2.2571 3.4507 -5.0249 38 1 3.7111 4.4773 -5.0489 39 1 3.5340 0.7726 -4.5519 40 1 2.3402 1.1298 -5.8228 41 1 3.8954 0.3758 -6.2488 42 1 2.7827 2.8739 -7.4947 43 1 4.2007 3.9397 -7.3481 44 1 3.9035 3.3448 -10.9705 45 1 4.8775 4.9531 -2.1098 46 1 3.8578 5.8874 -3.2341 47 1 3.8911 7.0118 -1.0415 48 1 2.2659 6.3412 -1.3334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560736025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:09 Heat of formation + Delta-G solvation = -59.728808 kcal Electronic energy + Delta-G solvation = -24818.496251 eV Core-core repulsion = 21450.357209 eV Total energy + Delta-G solvation = -3368.139042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73553 -38.88099 -38.51282 -36.34672 -34.47042 -34.34041 -32.09182 -31.39730 -29.87485 -28.78241 -27.03865 -25.62515 -25.02251 -23.98160 -23.57605 -22.59175 -21.07943 -20.23375 -18.65953 -18.50300 -17.67081 -16.85811 -16.58444 -16.43702 -15.82681 -15.74238 -15.60181 -15.20676 -14.80145 -14.68266 -14.41118 -14.32083 -14.08556 -13.88418 -13.70622 -13.56996 -13.36533 -13.12329 -12.81400 -12.79703 -12.72791 -12.48332 -12.25489 -12.21783 -11.99434 -11.83664 -11.72110 -11.66210 -11.49076 -11.36178 -11.07971 -10.86716 -10.54213 -9.70088 -9.34221 -8.92292 -8.18047 -6.26747 0.43016 0.53270 1.39215 1.40107 1.52797 2.37800 2.41660 2.79202 3.15654 3.18949 3.62773 3.72073 3.82852 4.01353 4.04960 4.14418 4.16035 4.28772 4.33931 4.43051 4.49896 4.52353 4.57693 4.62544 4.65363 4.69462 4.78776 4.88553 4.91577 4.96441 4.99574 5.02347 5.10118 5.15544 5.27857 5.28748 5.39079 5.44951 5.46375 5.50915 5.55813 5.60506 5.80191 5.81509 5.89027 5.93986 6.05880 6.31219 6.40838 6.52587 6.89524 7.41634 8.94128 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016997 B = 0.003100 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.908865 B = 9031.143573 C =10302.938793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.083 4.083 5 C -0.162 4.162 6 C 0.111 3.889 7 C -0.158 4.158 8 C -0.063 4.063 9 C 0.132 3.868 10 H 0.082 0.918 11 N -0.670 5.670 12 C 0.080 3.920 13 C -0.073 4.073 14 H 0.052 0.948 15 C -0.112 4.112 16 C 0.033 3.967 17 C -0.527 4.527 18 H 0.060 0.940 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.959 3.041 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.185 4.185 26 C 0.065 3.935 27 O -0.330 6.330 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.343 0.657 37 H 0.062 0.938 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.036 0.964 42 H -0.010 1.010 43 H -0.013 1.013 44 H 0.262 0.738 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.129 0.871 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 0.240 24.500 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.101 4.101 5 C -0.180 4.180 6 C 0.066 3.934 7 C -0.159 4.159 8 C -0.081 4.081 9 C 0.022 3.978 10 H 0.100 0.900 11 N -0.299 5.299 12 C -0.049 4.049 13 C -0.092 4.092 14 H 0.071 0.929 15 C -0.170 4.170 16 C -0.004 4.004 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.784 3.216 22 H -0.186 1.186 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.224 4.224 26 C -0.010 4.010 27 O -0.245 6.245 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.008 0.992 43 H 0.005 0.995 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.147 0.853 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.821 -0.057 24.508 24.978 hybrid contribution 0.921 0.653 -1.642 1.993 sum -3.900 0.596 22.866 23.204 Atomic orbital electron populations 1.21734 0.94519 1.02169 1.01697 1.20488 0.96306 0.91569 1.03224 1.20062 1.02113 0.97628 0.92827 1.21060 0.97238 0.93348 0.98476 1.20762 1.04946 0.96043 0.96253 1.18948 0.96177 0.84549 0.93746 1.19825 1.06546 0.96405 0.93163 1.20893 0.95869 0.93162 0.98208 1.20275 0.97826 0.89680 0.89971 0.89956 1.60487 1.16986 1.50110 1.02358 1.21880 0.99915 0.96107 0.87016 1.21000 0.98437 0.95595 0.94167 0.92925 1.21476 0.99063 0.95935 1.00506 1.19004 0.94941 0.94665 0.91812 1.21669 1.29048 1.13710 0.92116 0.92198 1.25928 0.96774 0.97028 1.00193 1.70101 1.43029 1.31915 1.12559 0.85481 0.78453 0.78963 0.78672 1.18624 1.20562 1.20567 1.22930 1.00366 0.98639 1.00474 1.23068 1.02282 0.93555 0.82090 1.85958 1.77790 1.22116 1.38592 0.93768 0.91404 0.92311 0.91500 0.89795 0.83274 0.84250 0.85864 0.83804 0.91961 0.95808 0.91550 0.94590 0.94520 0.99168 0.99480 0.92967 0.90746 0.89243 0.85339 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.89 71.98 0.71 -1.48 16 2 C -0.08 -1.31 6.06 29.85 0.18 -1.12 16 3 C -0.13 -2.61 5.13 -19.88 -0.10 -2.71 16 4 C -0.08 -1.55 9.70 22.22 0.22 -1.33 16 5 C -0.16 -3.37 9.94 22.42 0.22 -3.15 16 6 C 0.11 2.67 6.47 22.52 0.15 2.82 16 7 C -0.16 -3.92 5.56 -19.75 -0.11 -4.03 16 8 C -0.06 -1.54 8.92 22.30 0.20 -1.34 16 9 C 0.13 3.21 2.60 44.21 0.11 3.33 16 10 H 0.08 2.07 7.80 -2.39 -0.02 2.05 16 11 N -0.67 -18.27 4.91 -495.20 -2.43 -20.71 16 12 C 0.08 2.62 4.87 86.30 0.42 3.04 16 13 C -0.07 -2.92 2.48 -10.79 -0.03 -2.95 16 14 H 0.05 2.11 8.14 -2.38 -0.02 2.10 16 15 C -0.11 -4.24 8.89 71.98 0.64 -3.60 16 16 C 0.03 1.74 4.45 29.85 0.13 1.87 16 17 C -0.53 -29.73 8.41 25.60 0.22 -29.51 16 18 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.94 -57.02 13.29 21.44 0.28 -56.74 16 21 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 C -0.18 -3.82 5.46 30.75 0.17 -3.65 16 26 C 0.07 1.18 7.02 72.12 0.51 1.69 16 27 O -0.33 -7.61 10.28 -91.92 -0.94 -8.56 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.12 3.25 7.69 -2.91 -0.02 3.23 16 36 H 0.34 9.22 8.33 -89.69 -0.75 8.47 16 37 H 0.06 2.11 8.05 -2.39 -0.02 2.09 16 38 H 0.02 0.79 7.70 -2.39 -0.02 0.77 16 39 H 0.07 2.17 7.75 -2.38 -0.02 2.15 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.48 6.95 -2.39 -0.02 1.47 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.07 1.62 7.91 -2.39 -0.02 1.60 16 46 H 0.09 1.77 7.80 -2.39 -0.02 1.76 16 47 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -64.44 381.55 3.20 -61.23 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.17 Total: 20.04 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 4.10 Total: -41.81 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -2.15 Total: -77.44 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.94 Total: -8.56 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -64.44 3.20 -61.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560736025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.505 kcal (2) G-P(sol) polarization free energy of solvation -64.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds