Wall clock time and date at job start Tue Mar 31 2020 07:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34516 * 125.78854 * 2 1 4 4 C 1.41393 * 106.83832 * 179.77314 * 3 2 1 5 5 C 1.34516 * 106.84073 * 0.23083 * 4 3 2 6 6 C 1.50694 * 125.78750 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46579 * 340.01496 * 6 5 4 8 8 C 1.53033 * 109.46557 * 99.99831 * 6 5 4 9 9 C 1.53121 * 109.28246 * 179.19571 * 8 6 5 10 10 H 1.08996 * 109.52391 * 62.24634 * 9 8 6 11 11 C 1.52999 * 109.52510 * 182.37500 * 9 8 6 12 12 C 1.53117 * 109.15769 * 302.34323 * 9 8 6 13 13 C 1.53035 * 109.28289 * 57.65092 * 12 9 8 14 14 N 1.46854 * 109.45853 * 220.04810 * 6 5 4 15 15 C 1.46893 * 111.00073 * 54.14560 * 14 6 5 16 16 C 1.52997 * 109.47145 * 175.93929 * 15 14 6 17 17 C 1.50703 * 115.55420 * 268.77119 * 16 15 14 18 18 H 1.08001 * 119.99851 * 115.36450 * 17 16 15 19 19 C 1.37871 * 119.99997 * 295.37452 * 17 16 15 20 20 N 1.31515 * 120.00265 * 353.06456 * 19 17 16 21 21 Si 1.86806 * 119.99885 * 173.06977 * 19 17 16 22 22 H 1.48492 * 109.47140 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47108 * 119.99784 * 21 19 17 24 24 H 1.48494 * 109.46912 * 239.99665 * 21 19 17 25 25 C 1.53002 * 117.49653 * 123.06388 * 16 15 14 26 26 C 1.53000 * 60.00247 * 252.51052 * 25 16 15 27 27 O 1.34306 * 125.78917 * 180.16750 * 2 1 3 28 28 H 1.09003 * 109.47143 * 89.99627 * 1 2 3 29 29 H 1.08999 * 109.47032 * 210.00164 * 1 2 3 30 30 H 1.09000 * 109.46809 * 330.00383 * 1 2 3 31 31 H 1.07991 * 126.58214 * 0.03746 * 3 2 1 32 32 H 1.07999 * 126.57821 * 180.18497 * 4 3 2 33 33 H 1.09001 * 109.49927 * 299.13296 * 8 6 5 34 34 H 1.09002 * 109.50601 * 59.21165 * 8 6 5 35 35 H 1.08998 * 109.47001 * 59.99880 * 11 9 8 36 36 H 1.08998 * 109.46915 * 179.97438 * 11 9 8 37 37 H 1.08997 * 109.46966 * 299.99871 * 11 9 8 38 38 H 1.09000 * 109.50663 * 177.59839 * 12 9 8 39 39 H 1.09005 * 109.50355 * 297.67338 * 12 9 8 40 40 H 1.09007 * 109.45880 * 60.83637 * 13 12 9 41 41 H 1.08993 * 109.46978 * 180.80407 * 13 12 9 42 42 H 1.08993 * 109.47348 * 295.93980 * 15 14 6 43 43 H 1.09007 * 109.47368 * 55.94346 * 15 14 6 44 44 H 0.96997 * 120.00240 * 185.06814 * 20 19 17 45 45 H 1.08999 * 117.50256 * 0.02562 * 25 16 15 46 46 H 1.09008 * 117.49935 * 145.02336 * 25 16 15 47 47 H 1.08998 * 117.49810 * 252.51213 * 26 25 16 48 48 H 1.09001 * 117.51585 * 107.48065 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6320 0.0054 5 6 3.5814 -0.7122 0.0031 6 6 4.7706 -1.6379 0.0077 7 1 5.6522 -1.0983 -0.3384 8 6 5.0121 -2.1509 1.4291 9 6 6.2085 -3.1064 1.4253 10 1 7.1030 -2.5689 1.1107 11 6 6.4184 -3.6686 2.8327 12 6 5.9319 -4.2542 0.4503 13 6 5.6637 -3.6804 -0.9428 14 7 4.5100 -2.7735 -0.8863 15 6 4.1375 -2.3111 -2.2298 16 6 3.9731 -3.5171 -3.1568 17 6 5.2109 -3.9319 -3.9097 18 1 5.6621 -4.8943 -3.7186 19 6 5.7675 -3.0826 -4.8423 20 7 5.1458 -1.9723 -5.1744 21 14 7.4048 -3.5090 -5.6342 22 1 7.8947 -4.8020 -5.0928 23 1 7.2290 -3.6222 -7.1044 24 1 8.3925 -2.4413 -5.3346 25 6 2.6262 -3.6872 -3.8626 26 6 3.0117 -4.6223 -2.7146 27 8 2.2924 -1.0895 -0.0032 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9666 2.1204 0.0006 32 1 4.5213 1.2433 0.0096 33 1 5.2209 -1.3090 2.0892 34 1 4.1255 -2.6783 1.7812 35 1 5.5243 -4.2079 3.1455 36 1 7.2699 -4.3490 2.8289 37 1 6.6101 -2.8499 3.5261 38 1 6.7977 -4.9152 0.4112 39 1 5.0604 -4.8157 0.7871 40 1 6.5410 -3.1310 -1.2843 41 1 5.4522 -4.4941 -1.6363 42 1 3.1973 -1.7623 -2.1775 43 1 4.9185 -1.6577 -2.6188 44 1 5.4994 -1.4116 -5.8826 45 1 1.8575 -2.9397 -3.6669 46 1 2.6353 -4.0991 -4.8718 47 1 3.2744 -5.6492 -2.9685 48 1 2.4967 -4.4903 -1.7630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653472957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:38 Heat of formation + Delta-G solvation = 28.115991 kcal Electronic energy + Delta-G solvation = -26555.391019 eV Core-core repulsion = 23191.061213 eV Total energy + Delta-G solvation = -3364.329806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24733 -38.88150 -36.42344 -33.73518 -32.80029 -32.14824 -31.97496 -30.14224 -28.27263 -25.97203 -25.72142 -24.29106 -22.61909 -21.40199 -21.34559 -20.91274 -19.67888 -19.27864 -18.65691 -16.32782 -16.12282 -15.73468 -14.96030 -14.61315 -14.51692 -14.24178 -14.12311 -13.77472 -13.41059 -13.07519 -12.97314 -12.81557 -12.73449 -12.43118 -12.40177 -11.96109 -11.87614 -11.69619 -11.47803 -11.26337 -11.14557 -10.92804 -10.85610 -10.79436 -10.43132 -10.29473 -10.15407 -9.98921 -9.72954 -9.50344 -9.27733 -8.79594 -8.44485 -8.09868 -7.87286 -7.40268 -6.02537 -4.07132 2.08860 2.93213 3.25524 3.27302 3.34906 3.37887 4.38825 4.49779 4.83048 5.08170 5.08902 5.11311 5.21400 5.28995 5.35007 5.48093 5.55302 5.60183 5.61722 5.67062 5.77288 5.79833 5.88023 5.91672 6.03087 6.05733 6.12577 6.19553 6.26626 6.32087 6.34782 6.38691 6.47148 6.53745 6.60579 6.63789 6.80857 6.82929 6.88898 6.93045 6.98792 7.18249 7.20452 7.52779 7.56172 7.60060 7.85430 8.02753 8.04663 8.48373 8.92970 9.55681 11.05007 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.006189 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.294520 B = 4523.136499 C = 5820.595846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 C -0.213 4.213 4 C -0.221 4.221 5 C 0.024 3.976 6 C 0.160 3.840 7 H 0.062 0.938 8 C -0.099 4.099 9 C -0.094 4.094 10 H 0.065 0.935 11 C -0.143 4.143 12 C -0.114 4.114 13 C 0.062 3.938 14 N -0.524 5.524 15 C 0.108 3.892 16 C 0.053 3.947 17 C -0.492 4.492 18 H 0.060 0.940 19 C 0.071 3.929 20 N -0.877 5.877 21 Si 0.883 3.117 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.176 4.176 26 C -0.193 4.193 27 O -0.153 6.153 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.259 0.741 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 2.729 13.462 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.232 4.232 4 C -0.241 4.241 5 C -0.027 4.027 6 C 0.051 3.949 7 H 0.080 0.920 8 C -0.137 4.137 9 C -0.112 4.112 10 H 0.084 0.916 11 C -0.200 4.200 12 C -0.152 4.152 13 C -0.066 4.066 14 N -0.249 5.249 15 C -0.019 4.019 16 C 0.052 3.948 17 C -0.529 4.529 18 H 0.078 0.922 19 C -0.132 4.132 20 N -0.513 5.513 21 Si 0.711 3.289 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.215 4.215 26 C -0.230 4.230 27 O -0.048 6.048 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.123 0.877 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.287 2.366 13.570 14.162 hybrid contribution 1.591 0.757 -1.081 2.067 sum -1.696 3.123 12.490 12.985 Atomic orbital electron populations 1.20226 0.85693 1.03381 1.03336 1.22377 0.93971 0.84659 1.06701 1.21415 0.92721 0.98954 1.10110 1.21458 0.98010 0.93854 1.10772 1.22313 0.83052 0.93675 1.03663 1.20175 0.89490 0.90186 0.95072 0.92042 1.21655 0.98877 0.98625 0.94561 1.21188 0.97711 0.96812 0.95510 0.91635 1.21789 1.01452 1.00495 0.96252 1.21747 1.01090 0.96936 0.95407 1.22149 0.91003 0.97592 0.95836 1.62137 1.36569 1.14651 1.11538 1.21602 0.98626 0.96911 0.84763 1.18761 0.89399 0.91740 0.94873 1.20556 1.08825 1.01991 1.21554 0.92185 1.24972 0.96973 0.94800 0.96503 1.69998 1.38989 1.13291 1.29063 0.86673 0.84536 0.78475 0.79220 1.19617 1.21063 1.21063 1.22720 1.01085 1.01962 0.95712 1.22751 1.07423 0.95332 0.97533 1.84070 1.16075 1.34156 1.70532 0.90304 0.90814 0.89920 0.84125 0.84096 0.92028 0.90953 0.92728 0.92868 0.93174 0.92153 0.91502 0.95353 0.87685 0.93611 0.93663 0.93105 0.92260 0.90687 0.91242 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.42 36.01 0.38 -0.40 16 2 C -0.03 -0.41 7.32 -35.62 -0.26 -0.67 16 3 C -0.21 -3.24 10.81 -39.70 -0.43 -3.66 16 4 C -0.22 -3.65 10.80 -39.70 -0.43 -4.08 16 5 C 0.02 0.43 4.67 -35.63 -0.17 0.27 16 6 C 0.16 2.79 2.30 -68.88 -0.16 2.63 16 7 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 8 C -0.10 -1.43 4.64 -26.65 -0.12 -1.56 16 9 C -0.09 -1.25 2.79 -90.50 -0.25 -1.50 16 10 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.14 -1.56 9.21 37.16 0.34 -1.22 16 12 C -0.11 -1.72 5.38 -26.65 -0.14 -1.86 16 13 C 0.06 1.17 4.68 -3.83 -0.02 1.15 16 14 N -0.52 -10.36 4.36 -228.08 -0.99 -11.36 16 15 C 0.11 2.52 4.55 -3.83 -0.02 2.50 16 16 C 0.05 1.29 0.58 -155.66 -0.09 1.21 16 17 C -0.49 -12.94 7.08 -34.44 -0.24 -13.18 16 18 H 0.06 1.58 7.51 -52.49 -0.39 1.18 16 19 C 0.07 1.90 5.19 -17.82 -0.09 1.81 16 20 N -0.88 -24.73 12.62 55.43 0.70 -24.03 16 21 Si 0.88 20.81 29.55 -169.99 -5.02 15.79 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.18 -4.25 9.88 -26.73 -0.26 -4.51 16 26 C -0.19 -4.31 9.26 -26.73 -0.25 -4.56 16 27 O -0.15 -2.83 10.02 5.69 0.06 -2.77 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.11 2.23 5.09 -51.93 -0.26 1.97 16 42 H 0.05 1.12 6.35 -51.93 -0.33 0.79 16 43 H 0.05 1.19 7.26 -51.93 -0.38 0.82 16 44 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 45 H 0.06 1.39 8.03 -51.93 -0.42 0.97 16 46 H 0.07 1.87 8.14 -51.92 -0.42 1.45 16 47 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 48 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -28.66 376.35 -10.33 -39.00 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.53 Total: 5.35 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -2.22 Total: -27.65 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.29 Total: -35.39 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: 0.06 Total: -2.77 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.66 -10.33 -39.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653472957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.115 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds