Wall clock time and date at job start Tue Mar 31 2020 07:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34515 * 125.79219 * 2 1 4 4 C 1.41376 * 106.84172 * 179.97438 * 3 2 1 5 5 C 1.34518 * 106.84297 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.79047 * 180.26336 * 5 4 3 7 7 H 1.08997 * 109.46295 * 19.69652 * 6 5 4 8 8 C 1.53039 * 109.46426 * 259.71861 * 6 5 4 9 9 C 1.53117 * 109.27904 * 180.80491 * 8 6 5 10 10 H 1.08993 * 109.52437 * 297.75257 * 9 8 6 11 11 C 1.53000 * 109.52379 * 177.55707 * 9 8 6 12 12 C 1.53122 * 109.15975 * 57.65294 * 9 8 6 13 13 C 1.53028 * 109.28099 * 302.34688 * 12 9 8 14 14 N 1.46847 * 109.46116 * 139.66452 * 6 5 4 15 15 C 1.46895 * 111.00145 * 305.85340 * 14 6 5 16 16 C 1.53001 * 109.47215 * 175.08501 * 15 14 6 17 17 C 1.50695 * 115.55509 * 305.40958 * 16 15 14 18 18 H 1.07995 * 120.00197 * 144.38728 * 17 16 15 19 19 C 1.37877 * 119.99662 * 324.39075 * 17 16 15 20 20 N 1.31516 * 119.99889 * 347.69790 * 19 17 16 21 21 Si 1.86800 * 120.00029 * 167.70525 * 19 17 16 22 22 H 1.48501 * 109.47006 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47172 * 119.99903 * 21 19 17 24 24 H 1.48506 * 109.46908 * 239.99639 * 21 19 17 25 25 C 1.53005 * 117.50027 * 159.73335 * 16 15 14 26 26 C 1.53004 * 117.49405 * 91.07762 * 16 15 14 27 27 O 1.34299 * 108.41972 * 0.02562 * 5 4 3 28 28 H 1.08996 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47483 * 300.00696 * 1 2 3 30 30 H 1.09008 * 109.46538 * 60.00096 * 1 2 3 31 31 H 1.07995 * 126.58036 * 0.02562 * 3 2 1 32 32 H 1.08000 * 126.58348 * 180.02562 * 4 3 2 33 33 H 1.09008 * 109.49908 * 300.74830 * 8 6 5 34 34 H 1.08995 * 109.50095 * 60.82129 * 8 6 5 35 35 H 1.09001 * 109.47025 * 60.00185 * 11 9 8 36 36 H 1.08991 * 109.47276 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.47029 * 300.00321 * 11 9 8 38 38 H 1.09008 * 109.50414 * 62.28589 * 12 9 8 39 39 H 1.09000 * 109.50076 * 182.39931 * 12 9 8 40 40 H 1.09004 * 109.46497 * 179.19650 * 13 12 9 41 41 H 1.09004 * 109.46178 * 299.17586 * 13 12 9 42 42 H 1.08999 * 109.47546 * 295.08678 * 15 14 6 43 43 H 1.09002 * 109.46839 * 55.08875 * 15 14 6 44 44 H 0.97005 * 119.99450 * 183.44227 * 20 19 17 45 45 H 1.09008 * 117.49493 * 0.02562 * 25 16 15 46 46 H 1.08992 * 117.49964 * 145.02139 * 25 16 15 47 47 H 1.09002 * 117.49813 * 214.98073 * 26 16 15 48 48 H 1.09003 * 117.50179 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0006 5 6 3.5814 -0.7123 0.0015 6 6 4.7705 -1.6379 0.0080 7 1 5.6497 -1.0972 0.3582 8 6 5.0215 -2.1556 -1.4101 9 6 6.2179 -3.1111 -1.3951 10 1 7.1102 -2.5726 -1.0762 11 6 6.4362 -3.6793 -2.7988 12 6 5.9347 -4.2557 -0.4181 13 6 5.6572 -3.6772 0.9712 14 7 4.5040 -2.7705 0.9039 15 6 4.1225 -2.3038 2.2435 16 6 3.7351 -3.5034 3.1105 17 6 2.6650 -4.3986 2.5409 18 1 2.7085 -5.4649 2.7065 19 6 1.6305 -3.8562 1.8083 20 7 1.4375 -2.5553 1.8064 21 14 0.5030 -4.9692 0.8186 22 1 0.9298 -6.3816 0.9866 23 1 -0.8933 -4.8129 1.2993 24 1 0.5767 -4.5977 -0.6173 25 6 3.7659 -3.3171 4.6288 26 6 4.8399 -4.1621 3.9392 27 8 2.2924 -1.0895 0.0009 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5139 -0.8901 31 1 1.9667 2.1204 0.0004 32 1 4.5212 1.2432 0.0012 33 1 4.1375 -2.6848 -1.7661 34 1 5.2340 -1.3159 -2.0717 35 1 6.6321 -2.8634 -3.4946 36 1 7.2876 -4.3596 -2.7871 37 1 5.5439 -4.2198 -3.1148 38 1 5.0651 -4.8179 -0.7585 39 1 6.8003 -4.9165 -0.3710 40 1 5.4411 -4.4888 1.6660 41 1 6.5322 -3.1265 1.3167 42 1 4.9638 -1.7823 2.6998 43 1 3.2740 -1.6243 2.1634 44 1 0.6803 -2.1781 1.3318 45 1 4.0617 -2.3396 5.0100 46 1 3.0123 -3.8421 5.2157 47 1 4.7924 -5.2429 4.0726 48 1 5.8427 -3.7410 3.8664 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653472958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:39 Heat of formation + Delta-G solvation = 31.626372 kcal Electronic energy + Delta-G solvation = -27412.056579 eV Core-core repulsion = 24047.878995 eV Total energy + Delta-G solvation = -3364.177584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.20425 -40.22712 -38.11253 -34.99909 -33.95278 -33.71255 -33.26421 -31.22077 -29.54875 -27.38932 -26.93773 -25.79518 -23.99730 -22.84602 -22.54302 -22.29993 -20.83885 -20.56561 -20.34098 -18.11121 -17.35763 -16.65397 -16.51871 -16.14804 -15.85040 -15.52171 -15.32408 -15.24137 -14.81223 -14.58006 -14.15999 -13.82999 -13.71593 -13.60977 -13.35637 -13.27045 -13.09477 -12.99988 -12.81437 -12.69952 -12.68134 -12.42737 -12.29028 -12.24758 -12.09945 -11.90128 -11.53423 -11.28609 -11.21827 -10.93805 -10.85786 -10.49235 -10.30260 -9.78010 -8.88222 -8.77457 -7.78344 -5.81462 1.14052 1.41992 1.49242 1.54087 1.89598 2.39363 2.57276 3.11008 3.36969 3.72424 3.83856 3.95737 3.99403 4.12009 4.27925 4.29317 4.32872 4.37876 4.46144 4.52816 4.60847 4.65934 4.75958 4.76744 4.78053 4.84241 4.86389 4.93482 4.94956 4.97057 4.97852 5.09289 5.10823 5.16235 5.19176 5.21461 5.30282 5.33836 5.40766 5.50505 5.53958 5.57554 5.62321 5.80422 5.91384 6.18129 6.50316 6.54041 6.75602 6.78319 7.11131 7.76048 9.22416 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009377 B = 0.008997 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.312148 B = 3111.466841 C = 4236.653156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.025 4.025 3 C -0.234 4.234 4 C -0.235 4.235 5 C -0.004 4.004 6 C 0.162 3.838 7 H 0.058 0.942 8 C -0.094 4.094 9 C -0.085 4.085 10 H 0.078 0.922 11 C -0.138 4.138 12 C -0.105 4.105 13 C 0.058 3.942 14 N -0.507 5.507 15 C 0.116 3.884 16 C 0.053 3.947 17 C -0.503 4.503 18 H 0.032 0.968 19 C 0.070 3.930 20 N -0.852 5.852 21 Si 0.918 3.082 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.289 1.289 25 C -0.213 4.213 26 C -0.196 4.196 27 O -0.134 6.134 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.022 0.978 42 H -0.022 1.022 43 H 0.095 0.905 44 H 0.259 0.741 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.487 5.355 -7.727 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.253 4.253 4 C -0.255 4.255 5 C -0.056 4.056 6 C 0.054 3.946 7 H 0.075 0.925 8 C -0.131 4.131 9 C -0.104 4.104 10 H 0.097 0.903 11 C -0.195 4.195 12 C -0.143 4.143 13 C -0.070 4.070 14 N -0.231 5.231 15 C -0.012 4.012 16 C 0.052 3.948 17 C -0.540 4.540 18 H 0.050 0.950 19 C -0.135 4.135 20 N -0.488 5.488 21 Si 0.747 3.253 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.215 1.215 25 C -0.251 4.251 26 C -0.233 4.233 27 O -0.027 6.027 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.178 0.822 32 H 0.171 0.829 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.040 0.960 42 H -0.004 1.004 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.877 4.933 -8.048 11.119 hybrid contribution -0.180 -0.072 0.410 0.454 sum 5.697 4.861 -7.638 10.697 Atomic orbital electron populations 1.20316 0.84657 1.03119 1.04159 1.22918 0.95237 0.84773 1.04790 1.21585 0.92367 0.99577 1.11775 1.21631 0.98754 0.93432 1.11690 1.22430 0.84080 0.94004 1.05121 1.20185 0.89505 0.89362 0.95555 0.92470 1.21620 0.98600 0.99228 0.93701 1.21146 0.97091 0.95680 0.96436 0.90347 1.21740 1.01667 1.01121 0.94953 1.21628 1.01150 0.97724 0.93815 1.22116 0.90073 0.96540 0.98222 1.61641 1.35679 1.15397 1.10401 1.21494 0.96575 0.96430 0.86651 1.18924 0.94019 0.94697 0.87184 1.20207 1.08311 0.91340 1.34131 0.94967 1.25008 0.97501 0.95340 0.95623 1.69879 1.28019 1.10337 1.40552 0.86163 0.79297 0.80142 0.79700 1.20717 1.21339 1.21514 1.22970 1.02068 0.99205 1.00893 1.22906 0.93657 0.97474 1.09304 1.84356 1.15803 1.34146 1.68433 0.92520 0.89155 0.87933 0.82215 0.82855 0.93501 0.90314 0.91696 0.91314 0.93649 0.93241 0.89982 0.91088 0.96011 1.00378 0.88704 0.92955 0.91406 0.91443 0.90917 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 9.93 71.24 0.71 -1.29 16 2 C -0.03 -0.96 6.92 24.83 0.17 -0.78 16 3 C -0.23 -7.97 10.81 22.19 0.24 -7.73 16 4 C -0.24 -8.32 10.80 22.19 0.24 -8.08 16 5 C 0.00 -0.17 4.52 24.83 0.11 -0.06 16 6 C 0.16 6.01 2.30 44.19 0.10 6.12 16 7 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 8 C -0.09 -2.95 4.64 30.65 0.14 -2.81 16 9 C -0.09 -2.23 2.79 -10.71 -0.03 -2.26 16 10 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 11 C -0.14 -2.95 9.20 71.98 0.66 -2.28 16 12 C -0.11 -3.24 5.38 30.64 0.16 -3.07 16 13 C 0.06 2.15 5.06 86.32 0.44 2.59 16 14 N -0.51 -21.49 4.13 -875.52 -3.62 -25.11 16 15 C 0.12 5.47 3.85 86.30 0.33 5.80 16 16 C 0.05 2.58 1.20 -52.93 -0.06 2.52 16 17 C -0.50 -27.44 8.73 25.60 0.22 -27.22 16 18 H 0.03 1.83 7.84 -2.91 -0.02 1.80 16 19 C 0.07 3.78 5.16 84.65 0.44 4.22 16 20 N -0.85 -45.35 8.46 21.45 0.18 -45.17 16 21 Si 0.92 44.42 29.56 68.60 2.03 46.45 16 22 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 C -0.21 -9.86 9.96 30.62 0.30 -9.55 16 26 C -0.20 -8.46 8.10 30.62 0.25 -8.22 16 27 O -0.13 -5.97 7.21 -2.51 -0.02 -5.99 16 28 H 0.06 1.89 7.09 -2.39 -0.02 1.88 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.15 4.56 8.06 -2.91 -0.02 4.53 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.71 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.92 5.67 -2.38 -0.01 2.91 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H -0.02 -1.00 8.09 -2.39 -0.02 -1.02 16 43 H 0.10 5.03 4.33 -2.39 -0.01 5.02 16 44 H 0.26 13.25 5.73 -92.70 -0.53 12.72 16 45 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 46 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 48 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -60.39 365.15 4.15 -56.23 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 1.15 Total: 25.69 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 4.43 Total: -52.11 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -3.44 Total: -70.28 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.02 Total: -5.99 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -60.39 4.15 -56.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653472958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.860 kcal (2) G-P(sol) polarization free energy of solvation -60.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds