Wall clock time and date at job start Tue Mar 31 2020 07:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34519 * 125.78493 * 2 1 4 4 C 1.41389 * 106.83694 * 179.97438 * 3 2 1 5 5 C 1.34518 * 106.84050 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.78919 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.46135 * 347.79332 * 6 5 4 8 8 C 1.53028 * 109.46315 * 107.76133 * 6 5 4 9 9 C 1.53118 * 109.31123 * 60.85557 * 8 6 5 10 10 H 1.08998 * 109.49449 * 297.71211 * 9 8 6 11 11 C 1.53000 * 109.55945 * 177.51976 * 9 8 6 12 12 C 1.53119 * 109.15636 * 57.59739 * 9 8 6 13 13 C 1.53031 * 109.31226 * 302.40050 * 12 9 8 14 14 N 1.46846 * 109.46144 * 227.81813 * 6 5 4 15 15 C 1.46892 * 111.00380 * 65.82240 * 14 6 5 16 16 C 1.53005 * 109.47164 * 169.39647 * 15 14 6 17 17 C 1.50701 * 115.54641 * 305.89478 * 16 15 14 18 18 H 1.08005 * 119.99648 * 144.43293 * 17 16 15 19 19 C 1.37878 * 120.00353 * 324.43745 * 17 16 15 20 20 N 1.31508 * 120.00014 * 349.57625 * 19 17 16 21 21 Si 1.86799 * 120.00093 * 169.56967 * 19 17 16 22 22 H 1.48496 * 109.47287 * 65.00247 * 21 19 17 23 23 H 1.48496 * 109.47117 * 185.00223 * 21 19 17 24 24 H 1.48505 * 109.47221 * 305.00546 * 21 19 17 25 25 C 1.52996 * 117.50128 * 160.23029 * 16 15 14 26 26 C 1.52998 * 117.50199 * 91.56783 * 16 15 14 27 27 O 1.34301 * 108.42134 * 0.26806 * 5 4 3 28 28 H 1.09006 * 109.46800 * 90.00322 * 1 2 3 29 29 H 1.08998 * 109.47058 * 210.00126 * 1 2 3 30 30 H 1.08999 * 109.47651 * 330.00338 * 1 2 3 31 31 H 1.07996 * 126.58130 * 359.94588 * 3 2 1 32 32 H 1.07996 * 126.58016 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.50716 * 180.78251 * 8 6 5 34 34 H 1.09006 * 109.50518 * 300.89827 * 8 6 5 35 35 H 1.08998 * 109.47239 * 300.30607 * 11 9 8 36 36 H 1.09006 * 109.47167 * 60.29777 * 11 9 8 37 37 H 1.09001 * 109.47487 * 180.29911 * 11 9 8 38 38 H 1.09007 * 109.50371 * 182.44537 * 12 9 8 39 39 H 1.09000 * 109.50239 * 62.37037 * 12 9 8 40 40 H 1.08997 * 109.46583 * 179.17765 * 13 12 9 41 41 H 1.09001 * 109.46371 * 299.14835 * 13 12 9 42 42 H 1.09007 * 109.47220 * 289.38981 * 15 14 6 43 43 H 1.08997 * 109.47199 * 49.39440 * 15 14 6 44 44 H 0.97001 * 120.00460 * 185.03960 * 20 19 17 45 45 H 1.09006 * 117.49944 * 0.02562 * 25 16 15 46 46 H 1.09005 * 117.50237 * 145.01683 * 25 16 15 47 47 H 1.08994 * 117.49715 * 214.98005 * 26 16 15 48 48 H 1.08997 * 117.49917 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0006 5 6 3.5814 -0.7121 0.0015 6 6 4.7706 -1.6378 0.0019 7 1 5.6742 -1.0683 -0.2160 8 6 4.9029 -2.2974 1.3763 9 6 3.6408 -3.1131 1.6701 10 1 2.7778 -2.4483 1.7042 11 6 3.7928 -3.8250 3.0159 12 6 3.4440 -4.1509 0.5617 13 6 3.3538 -3.4376 -0.7892 14 7 4.5854 -2.6726 -1.0234 15 6 4.5931 -2.0867 -2.3704 16 6 4.6642 -3.2047 -3.4125 17 6 5.8034 -4.1771 -3.2456 18 1 5.6620 -5.2206 -3.4856 19 6 7.0259 -3.7347 -2.7866 20 7 7.2643 -2.4451 -2.6894 21 14 8.3435 -4.9672 -2.3026 22 1 8.7715 -5.7310 -3.5020 23 1 9.5100 -4.2465 -1.7324 24 1 7.7965 -5.9041 -1.2885 25 6 4.2247 -2.8696 -4.8392 26 6 3.3417 -3.7518 -3.9531 27 8 2.2925 -1.0894 -0.0045 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9664 2.1205 -0.0008 32 1 4.5212 1.2434 0.0012 33 1 5.7710 -2.9565 1.3817 34 1 5.0247 -1.5281 2.1390 35 1 4.6579 -4.4871 2.9810 36 1 3.9330 -3.0855 3.8044 37 1 2.8959 -4.4094 3.2212 38 1 2.5233 -4.7060 0.7422 39 1 4.2886 -4.8398 0.5540 40 1 3.2283 -4.1753 -1.5818 41 1 2.5003 -2.7597 -0.7858 42 1 3.6815 -1.5080 -2.5201 43 1 5.4595 -1.4341 -2.4778 44 1 8.1472 -2.1327 -2.4368 45 1 3.8852 -1.8526 -5.0355 46 1 4.7592 -3.3529 -5.6571 47 1 3.2956 -4.8151 -4.1884 48 1 2.4208 -3.3157 -3.5661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653472959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:43 Heat of formation + Delta-G solvation = 39.675583 kcal Electronic energy + Delta-G solvation = -27186.626124 eV Core-core repulsion = 23822.797579 eV Total energy + Delta-G solvation = -3363.828544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.35679 -38.68692 -36.41806 -33.59025 -32.88099 -31.96387 -31.91839 -30.04321 -28.18660 -25.94155 -25.46297 -24.18354 -22.58504 -21.54866 -21.23701 -20.98381 -19.86566 -19.01674 -18.83363 -16.21009 -16.00978 -15.77315 -14.90837 -14.60241 -14.42624 -14.04370 -13.88621 -13.63254 -13.41835 -13.09316 -12.90490 -12.81445 -12.75366 -12.39969 -12.22748 -11.88352 -11.78567 -11.67950 -11.43498 -11.25217 -11.08540 -10.84055 -10.75153 -10.52809 -10.39872 -10.20374 -10.02243 -9.83743 -9.68475 -9.46221 -9.18880 -8.93542 -8.53780 -7.93626 -7.89075 -7.20132 -5.85553 -3.87130 2.09556 2.96936 3.25218 3.38836 3.43312 3.48512 4.51352 4.75287 4.94331 5.10560 5.20223 5.21430 5.26790 5.31598 5.35972 5.47232 5.48648 5.68997 5.71634 5.74622 5.87698 5.95635 6.04724 6.06837 6.09646 6.15322 6.19551 6.20844 6.31720 6.39337 6.42379 6.47431 6.49369 6.59209 6.63261 6.67138 6.74263 6.76489 6.87758 6.91910 7.00815 7.05736 7.25888 7.39753 7.57961 7.64501 8.07287 8.19363 8.25181 8.61148 9.05695 9.72374 11.16967 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.006340 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.632246 B = 4415.461230 C = 5179.711231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.044 4.044 3 C -0.210 4.210 4 C -0.223 4.223 5 C -0.011 4.011 6 C 0.164 3.836 7 H 0.109 0.891 8 C -0.103 4.103 9 C -0.093 4.093 10 H 0.067 0.933 11 C -0.143 4.143 12 C -0.107 4.107 13 C 0.045 3.955 14 N -0.480 5.480 15 C 0.107 3.893 16 C 0.070 3.930 17 C -0.474 4.474 18 H 0.052 0.948 19 C 0.091 3.909 20 N -0.877 5.877 21 Si 0.889 3.111 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.276 1.276 25 C -0.207 4.207 26 C -0.219 4.219 27 O -0.156 6.156 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.039 0.961 42 H -0.013 1.013 43 H 0.115 0.885 44 H 0.257 0.743 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 4.191 8.983 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.229 4.229 4 C -0.243 4.243 5 C -0.064 4.064 6 C 0.054 3.946 7 H 0.127 0.873 8 C -0.140 4.140 9 C -0.112 4.112 10 H 0.085 0.915 11 C -0.200 4.200 12 C -0.144 4.144 13 C -0.082 4.082 14 N -0.200 5.200 15 C -0.020 4.020 16 C 0.069 3.931 17 C -0.511 4.511 18 H 0.071 0.929 19 C -0.112 4.112 20 N -0.515 5.515 21 Si 0.717 3.283 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.201 1.201 25 C -0.246 4.246 26 C -0.256 4.256 27 O -0.053 6.053 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.005 0.995 43 H 0.133 0.867 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.834 3.668 9.127 13.221 hybrid contribution 0.024 0.304 -0.008 0.305 sum -8.809 3.972 9.119 13.287 Atomic orbital electron populations 1.20194 0.86018 1.03301 1.02989 1.22475 0.93987 0.85369 1.07526 1.21428 0.93011 0.98756 1.09746 1.21556 0.97781 0.94213 1.10722 1.24223 0.83572 0.95610 1.02967 1.20777 0.90575 0.89481 0.93793 0.87279 1.21664 0.98745 0.98939 0.94680 1.21208 0.98071 0.97266 0.94651 0.91488 1.21798 1.01375 1.00061 0.96772 1.21591 1.01110 0.97523 0.94215 1.22411 0.90869 0.97823 0.97108 1.61785 1.34808 1.21619 1.01799 1.21726 0.98756 0.95889 0.85632 1.18920 0.90615 0.94888 0.88701 1.20230 0.94470 0.93047 1.43345 0.92939 1.24700 0.97828 0.94682 0.93952 1.69772 1.21086 1.12809 1.47796 0.86737 0.81048 0.81663 0.78840 1.20983 1.21525 1.20138 1.22971 1.05773 0.97435 0.98385 1.22950 0.95724 0.97873 1.09044 1.84315 1.16465 1.33551 1.70937 0.90672 0.91010 0.90025 0.84415 0.84073 0.90216 0.92274 0.92681 0.93350 0.93202 0.92844 0.91212 0.89784 0.94332 0.99540 0.86700 0.93256 0.92147 0.90493 0.90911 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.42 36.00 0.38 -0.36 16 2 C -0.04 -0.66 7.32 -35.62 -0.26 -0.92 16 3 C -0.21 -3.18 10.81 -39.70 -0.43 -3.60 16 4 C -0.22 -3.71 10.79 -39.70 -0.43 -4.14 16 5 C -0.01 -0.20 4.38 -35.62 -0.16 -0.35 16 6 C 0.16 3.04 2.80 -68.88 -0.19 2.85 16 7 H 0.11 2.13 7.98 -51.93 -0.41 1.71 16 8 C -0.10 -1.66 4.89 -26.66 -0.13 -1.79 16 9 C -0.09 -1.42 2.47 -90.50 -0.22 -1.65 16 10 H 0.07 1.07 6.18 -51.93 -0.32 0.75 16 11 C -0.14 -1.82 9.20 37.16 0.34 -1.48 16 12 C -0.11 -1.79 5.38 -26.65 -0.14 -1.93 16 13 C 0.05 0.88 4.89 -3.83 -0.02 0.86 16 14 N -0.48 -10.09 4.18 -228.08 -0.95 -11.04 16 15 C 0.11 2.49 3.64 -3.83 -0.01 2.47 16 16 C 0.07 1.70 1.40 -155.66 -0.22 1.48 16 17 C -0.47 -12.65 8.72 -34.44 -0.30 -12.95 16 18 H 0.05 1.43 7.84 -52.48 -0.41 1.02 16 19 C 0.09 2.41 5.17 -17.82 -0.09 2.32 16 20 N -0.88 -23.37 10.76 55.43 0.60 -22.78 16 21 Si 0.89 21.02 29.55 -169.99 -5.02 15.99 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 C -0.21 -4.81 9.96 -26.70 -0.27 -5.07 16 26 C -0.22 -4.84 8.20 -26.69 -0.22 -5.06 16 27 O -0.16 -2.72 5.90 5.71 0.03 -2.69 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.78 5.83 -51.93 -0.30 1.47 16 41 H 0.04 0.76 4.87 -51.93 -0.25 0.51 16 42 H -0.01 -0.32 7.56 -51.93 -0.39 -0.71 16 43 H 0.12 2.95 5.85 -51.93 -0.30 2.65 16 44 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 47 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 48 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -27.57 366.67 -10.50 -38.06 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.30 Total: 6.24 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.38 Total: -29.32 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.36 Total: -33.82 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: 0.03 Total: -2.69 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.57 -10.50 -38.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653472959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.739 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds