Wall clock time and date at job start Tue Mar 31 2020 07:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34519 * 125.78493 * 2 1 4 4 C 1.41389 * 106.83694 * 179.97438 * 3 2 1 5 5 C 1.34518 * 106.84050 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.78919 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.46135 * 347.79332 * 6 5 4 8 8 C 1.53028 * 109.46315 * 107.76133 * 6 5 4 9 9 C 1.53118 * 109.31123 * 60.85557 * 8 6 5 10 10 H 1.08998 * 109.49449 * 297.71211 * 9 8 6 11 11 C 1.53000 * 109.55945 * 177.51976 * 9 8 6 12 12 C 1.53119 * 109.15636 * 57.59739 * 9 8 6 13 13 C 1.53031 * 109.31226 * 302.40050 * 12 9 8 14 14 N 1.46846 * 109.46144 * 227.81813 * 6 5 4 15 15 C 1.46892 * 111.00380 * 65.82240 * 14 6 5 16 16 C 1.53005 * 109.47164 * 169.39647 * 15 14 6 17 17 C 1.50701 * 115.54641 * 305.89478 * 16 15 14 18 18 H 1.08005 * 119.99648 * 144.43293 * 17 16 15 19 19 C 1.37878 * 120.00353 * 324.43745 * 17 16 15 20 20 N 1.31508 * 120.00014 * 349.57625 * 19 17 16 21 21 Si 1.86799 * 120.00093 * 169.56967 * 19 17 16 22 22 H 1.48496 * 109.47287 * 65.00247 * 21 19 17 23 23 H 1.48496 * 109.47117 * 185.00223 * 21 19 17 24 24 H 1.48505 * 109.47221 * 305.00546 * 21 19 17 25 25 C 1.52996 * 117.50128 * 160.23029 * 16 15 14 26 26 C 1.52998 * 117.50199 * 91.56783 * 16 15 14 27 27 O 1.34301 * 108.42134 * 0.26806 * 5 4 3 28 28 H 1.09006 * 109.46800 * 90.00322 * 1 2 3 29 29 H 1.08998 * 109.47058 * 210.00126 * 1 2 3 30 30 H 1.08999 * 109.47651 * 330.00338 * 1 2 3 31 31 H 1.07996 * 126.58130 * 359.94588 * 3 2 1 32 32 H 1.07996 * 126.58016 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.50716 * 180.78251 * 8 6 5 34 34 H 1.09006 * 109.50518 * 300.89827 * 8 6 5 35 35 H 1.08998 * 109.47239 * 300.30607 * 11 9 8 36 36 H 1.09006 * 109.47167 * 60.29777 * 11 9 8 37 37 H 1.09001 * 109.47487 * 180.29911 * 11 9 8 38 38 H 1.09007 * 109.50371 * 182.44537 * 12 9 8 39 39 H 1.09000 * 109.50239 * 62.37037 * 12 9 8 40 40 H 1.08997 * 109.46583 * 179.17765 * 13 12 9 41 41 H 1.09001 * 109.46371 * 299.14835 * 13 12 9 42 42 H 1.09007 * 109.47220 * 289.38981 * 15 14 6 43 43 H 1.08997 * 109.47199 * 49.39440 * 15 14 6 44 44 H 0.97001 * 120.00460 * 185.03960 * 20 19 17 45 45 H 1.09006 * 117.49944 * 0.02562 * 25 16 15 46 46 H 1.09005 * 117.50237 * 145.01683 * 25 16 15 47 47 H 1.08994 * 117.49715 * 214.98005 * 26 16 15 48 48 H 1.08997 * 117.49917 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0006 5 6 3.5814 -0.7121 0.0015 6 6 4.7706 -1.6378 0.0019 7 1 5.6742 -1.0683 -0.2160 8 6 4.9029 -2.2974 1.3763 9 6 3.6408 -3.1131 1.6701 10 1 2.7778 -2.4483 1.7042 11 6 3.7928 -3.8250 3.0159 12 6 3.4440 -4.1509 0.5617 13 6 3.3538 -3.4376 -0.7892 14 7 4.5854 -2.6726 -1.0234 15 6 4.5931 -2.0867 -2.3704 16 6 4.6642 -3.2047 -3.4125 17 6 5.8034 -4.1771 -3.2456 18 1 5.6620 -5.2206 -3.4856 19 6 7.0259 -3.7347 -2.7866 20 7 7.2643 -2.4451 -2.6894 21 14 8.3435 -4.9672 -2.3026 22 1 8.7715 -5.7310 -3.5020 23 1 9.5100 -4.2465 -1.7324 24 1 7.7965 -5.9041 -1.2885 25 6 4.2247 -2.8696 -4.8392 26 6 3.3417 -3.7518 -3.9531 27 8 2.2925 -1.0894 -0.0045 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9664 2.1205 -0.0008 32 1 4.5212 1.2434 0.0012 33 1 5.7710 -2.9565 1.3817 34 1 5.0247 -1.5281 2.1390 35 1 4.6579 -4.4871 2.9810 36 1 3.9330 -3.0855 3.8044 37 1 2.8959 -4.4094 3.2212 38 1 2.5233 -4.7060 0.7422 39 1 4.2886 -4.8398 0.5540 40 1 3.2283 -4.1753 -1.5818 41 1 2.5003 -2.7597 -0.7858 42 1 3.6815 -1.5080 -2.5201 43 1 5.4595 -1.4341 -2.4778 44 1 8.1472 -2.1327 -2.4368 45 1 3.8852 -1.8526 -5.0355 46 1 4.7592 -3.3529 -5.6571 47 1 3.2956 -4.8151 -4.1884 48 1 2.4208 -3.3157 -3.5661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653472959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:42 Heat of formation + Delta-G solvation = 27.419958 kcal Electronic energy + Delta-G solvation = -27187.157567 eV Core-core repulsion = 23822.797579 eV Total energy + Delta-G solvation = -3364.359988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.61857 -40.18673 -38.15400 -35.00372 -34.11146 -33.99095 -33.15506 -31.29826 -29.58956 -27.46742 -27.04913 -25.80557 -24.02417 -22.91636 -22.74870 -22.55150 -21.09678 -20.76319 -20.34315 -18.07641 -17.35151 -17.06728 -16.60664 -16.38499 -15.82297 -15.47245 -15.34515 -15.15285 -14.89249 -14.47393 -14.16294 -13.94664 -13.86183 -13.65533 -13.63643 -13.34245 -13.14642 -13.11318 -12.82169 -12.75113 -12.71432 -12.54025 -12.29622 -12.27474 -12.10605 -11.94094 -11.54689 -11.26664 -11.13812 -10.99391 -10.90925 -10.69708 -10.40463 -9.88290 -9.16423 -8.79415 -7.87668 -5.95298 0.85931 1.47391 1.50767 1.56811 1.73424 2.03835 2.53758 3.09856 3.36805 3.69455 3.76495 3.93739 3.98181 4.01016 4.12949 4.19790 4.29797 4.42706 4.50568 4.54283 4.61784 4.69729 4.70303 4.76049 4.79964 4.82906 4.85710 4.89102 4.90363 4.92123 4.92885 4.99442 5.08987 5.12287 5.14623 5.20880 5.24759 5.33171 5.36076 5.41579 5.46378 5.53832 5.65902 5.71114 5.72772 6.07419 6.30500 6.45239 6.59658 6.69600 7.01390 7.65565 9.12540 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.006340 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.632246 B = 4415.461230 C = 5179.711231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.046 4.046 3 C -0.220 4.220 4 C -0.230 4.230 5 C -0.032 4.032 6 C 0.164 3.836 7 H 0.089 0.911 8 C -0.098 4.098 9 C -0.085 4.085 10 H 0.064 0.936 11 C -0.137 4.137 12 C -0.102 4.102 13 C 0.050 3.950 14 N -0.494 5.494 15 C 0.128 3.872 16 C 0.045 3.955 17 C -0.491 4.491 18 H 0.039 0.961 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.938 3.062 22 H -0.283 1.283 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.210 4.210 26 C -0.195 4.195 27 O -0.170 6.170 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.164 0.836 32 H 0.147 0.853 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.040 0.960 42 H -0.024 1.024 43 H 0.087 0.913 44 H 0.257 0.743 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 4.394 10.475 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.239 4.239 4 C -0.250 4.250 5 C -0.084 4.084 6 C 0.055 3.945 7 H 0.107 0.893 8 C -0.136 4.136 9 C -0.104 4.104 10 H 0.082 0.918 11 C -0.194 4.194 12 C -0.140 4.140 13 C -0.078 4.078 14 N -0.215 5.215 15 C 0.001 3.999 16 C 0.044 3.956 17 C -0.528 4.528 18 H 0.058 0.942 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.766 3.234 22 H -0.209 1.209 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.248 4.248 26 C -0.232 4.232 27 O -0.067 6.067 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.182 0.818 32 H 0.165 0.835 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.057 0.943 42 H -0.006 1.006 43 H 0.105 0.895 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.358 3.871 10.623 15.333 hybrid contribution 0.448 0.299 -0.513 0.744 sum -9.910 4.170 10.110 14.758 Atomic orbital electron populations 1.20407 0.82846 1.05083 1.04045 1.23350 0.95776 0.84676 1.05730 1.21753 0.92121 1.00192 1.09848 1.21834 0.99080 0.94107 1.09996 1.23881 0.83698 0.95689 1.05151 1.20634 0.90463 0.89225 0.94220 0.89327 1.21647 0.98942 0.99244 0.93735 1.21126 0.97158 0.96653 0.95448 0.91804 1.21742 1.02018 1.00278 0.95368 1.21558 1.01472 0.97573 0.93348 1.22343 0.90297 0.97174 0.97952 1.61731 1.35861 1.22641 1.01220 1.21323 0.96752 0.94884 0.86988 1.19026 0.91422 0.95548 0.89611 1.20357 0.95615 0.92809 1.44046 0.94245 1.25197 0.99245 0.95938 0.93926 1.69894 1.21251 1.13706 1.47964 0.85954 0.79172 0.79947 0.78347 1.20894 1.21133 1.20219 1.22969 1.06083 0.98113 0.97683 1.22866 0.95185 0.97851 1.07315 1.84255 1.16400 1.34755 1.71328 0.89827 0.90190 0.87305 0.81845 0.83516 0.91392 0.90510 0.92841 0.92004 0.91815 0.90838 0.92688 0.91939 0.94295 1.00591 0.89502 0.93376 0.91373 0.91057 0.90652 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.42 71.24 0.74 -0.50 16 2 C -0.05 -1.29 7.32 24.83 0.18 -1.11 16 3 C -0.22 -6.25 10.81 22.19 0.24 -6.01 16 4 C -0.23 -7.55 10.79 22.19 0.24 -7.31 16 5 C -0.03 -1.14 4.38 24.83 0.11 -1.03 16 6 C 0.16 6.21 2.80 44.19 0.12 6.34 16 7 H 0.09 3.63 7.98 -2.38 -0.02 3.61 16 8 C -0.10 -3.13 4.89 30.64 0.15 -2.98 16 9 C -0.09 -2.47 2.47 -10.71 -0.03 -2.50 16 10 H 0.06 1.93 6.18 -2.39 -0.01 1.91 16 11 C -0.14 -3.15 9.20 71.98 0.66 -2.49 16 12 C -0.10 -3.33 5.38 30.64 0.16 -3.16 16 13 C 0.05 1.94 4.89 86.32 0.42 2.36 16 14 N -0.49 -21.20 4.18 -875.51 -3.66 -24.86 16 15 C 0.13 6.13 3.64 86.31 0.31 6.45 16 16 C 0.04 2.22 1.40 -52.93 -0.07 2.15 16 17 C -0.49 -26.71 8.72 25.60 0.22 -26.49 16 18 H 0.04 2.19 7.84 -2.91 -0.02 2.17 16 19 C 0.06 3.13 5.17 84.66 0.44 3.57 16 20 N -0.89 -48.48 10.76 21.45 0.23 -48.25 16 21 Si 0.94 43.55 29.55 68.60 2.03 45.57 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 C -0.21 -9.81 9.96 30.62 0.30 -9.50 16 26 C -0.19 -8.60 8.20 30.62 0.25 -8.35 16 27 O -0.17 -5.76 5.90 -2.47 -0.01 -5.78 16 28 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 2.66 5.83 -2.39 -0.01 2.65 16 41 H 0.04 1.53 4.87 -2.39 -0.01 1.52 16 42 H -0.02 -1.16 7.56 -2.38 -0.02 -1.18 16 43 H 0.09 4.65 5.85 -2.39 -0.01 4.63 16 44 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 45 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 46 H 0.07 3.36 8.14 -2.38 -0.02 3.34 16 47 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 48 H 0.07 3.07 8.13 -2.39 -0.02 3.05 16 Total: -1.00 -59.44 366.67 3.96 -55.48 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.92 Total: 28.41 kcal Atomic # 6 Polarization: -55.04 SS G_CDS: 4.47 Total: -50.58 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -3.43 Total: -73.11 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.01 Total: -5.78 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -59.44 3.96 -55.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653472959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.902 kcal (2) G-P(sol) polarization free energy of solvation -59.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds