Wall clock time and date at job start Tue Mar 31 2020 10:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47307 * 2 1 4 4 H 1.08999 * 109.46850 * 55.00166 * 3 2 1 5 5 C 1.52999 * 109.47338 * 295.00240 * 3 2 1 6 6 C 1.52998 * 109.46993 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46964 * 60.00461 * 6 5 3 8 8 C 1.52999 * 109.46889 * 299.99602 * 7 6 5 9 9 C 1.52996 * 109.47080 * 174.99867 * 3 2 1 10 10 H 1.08999 * 109.47035 * 60.00411 * 9 3 2 11 11 N 1.46903 * 109.47483 * 300.00371 * 9 3 2 12 12 C 1.46896 * 110.99987 * 155.00363 * 11 9 3 13 13 C 1.50701 * 109.47050 * 179.97438 * 12 11 9 14 14 C 1.38302 * 119.93101 * 89.99407 * 13 12 11 15 15 C 1.38106 * 120.07107 * 180.02562 * 14 13 12 16 16 C 1.38879 * 119.92571 * 359.97438 * 15 14 13 17 17 O 1.35753 * 120.06541 * 180.02562 * 16 15 14 18 18 C 1.34831 * 117.00188 * 354.46649 * 17 16 15 19 19 H 1.08005 * 119.99910 * 5.05947 * 18 17 16 20 20 C 1.38653 * 120.00325 * 185.05796 * 18 17 16 21 21 N 1.31556 * 119.99986 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99759 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47054 * 90.00219 * 22 20 18 24 24 H 1.48502 * 109.47026 * 209.99915 * 22 20 18 25 25 H 1.48498 * 109.47177 * 330.00281 * 22 20 18 26 26 C 1.38871 * 119.86478 * 0.27488 * 16 15 14 27 27 C 1.38102 * 119.92996 * 359.44898 * 26 16 15 28 28 H 1.09000 * 109.47010 * 299.99667 * 1 2 3 29 29 H 1.09006 * 109.47149 * 59.99818 * 1 2 3 30 30 H 1.09002 * 109.47304 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47347 * 240.00286 * 2 1 3 32 32 H 1.08996 * 109.47196 * 120.00227 * 2 1 3 33 33 H 1.08999 * 109.47089 * 299.99779 * 5 3 2 34 34 H 1.09004 * 109.47181 * 59.99486 * 5 3 2 35 35 H 1.09003 * 109.46749 * 179.97438 * 6 5 3 36 36 H 1.08999 * 109.47358 * 300.00025 * 6 5 3 37 37 H 1.08999 * 109.47439 * 59.99614 * 7 6 5 38 38 H 1.09002 * 109.46678 * 179.97438 * 7 6 5 39 39 H 1.09007 * 109.46919 * 300.00499 * 8 7 6 40 40 H 1.08996 * 109.47314 * 180.02562 * 8 7 6 41 41 H 1.00895 * 111.00134 * 31.04533 * 11 9 3 42 42 H 1.09000 * 109.47303 * 59.99863 * 12 11 9 43 43 H 1.09000 * 109.46921 * 299.99445 * 12 11 9 44 44 H 1.08001 * 119.96675 * 0.02562 * 14 13 12 45 45 H 1.07996 * 120.03520 * 179.97438 * 15 14 13 46 46 H 0.97002 * 119.99567 * 179.97438 * 21 20 18 47 47 H 1.08001 * 120.03616 * 179.72161 * 26 16 15 48 48 H 1.08005 * 119.96554 * 180.27602 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 2.1447 3.5693 -1.3069 7 6 3.6696 3.5715 -1.1811 8 6 4.0743 2.8874 0.1262 9 6 3.5648 1.4443 0.1258 10 1 3.9994 0.9053 -0.7161 11 7 3.9534 0.7874 1.3809 12 6 5.3135 0.2400 1.2895 13 6 5.6765 -0.4239 2.5927 14 6 5.3981 -1.7648 2.7851 15 6 5.7290 -2.3760 3.9786 16 6 6.3425 -1.6427 4.9858 17 8 6.6695 -2.2407 6.1598 18 6 6.2695 -3.5172 6.3288 19 1 5.7872 -4.0437 5.5185 20 6 6.4772 -4.1539 7.5429 21 7 6.0873 -5.3995 7.7076 22 14 7.3121 -3.2434 8.9441 23 1 6.2864 -2.5512 9.7653 24 1 8.0536 -4.2117 9.7913 25 1 8.2597 -2.2435 8.3897 26 6 6.6161 -0.2951 4.7915 27 6 6.2879 0.3089 3.5937 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.0698 1.5876 -2.1491 34 1 0.5489 2.1253 -1.3969 35 1 1.8567 4.0565 -2.2385 36 1 1.7098 4.1080 -0.4651 37 1 4.1045 3.0327 -2.0229 38 1 4.0326 4.5993 -1.1813 39 1 3.6393 3.4262 0.9681 40 1 5.1606 2.8894 0.2162 41 1 3.2910 0.0696 1.6336 42 1 6.0170 1.0471 1.0849 43 1 5.3568 -0.4927 0.4837 44 1 4.9214 -2.3347 2.0013 45 1 5.5110 -3.4231 4.1283 46 1 6.2331 -5.8450 8.5569 47 1 7.0890 0.2789 5.5746 48 1 6.5044 1.3558 3.4403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035257041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:08 Heat of formation + Delta-G solvation = -32.070128 kcal Electronic energy + Delta-G solvation = -24470.544487 eV Core-core repulsion = 21103.604816 eV Total energy + Delta-G solvation = -3366.939672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.69054 -39.08700 -36.98111 -34.74700 -34.16190 -32.39183 -30.65118 -30.20286 -29.39235 -27.94441 -25.52750 -24.34507 -23.81104 -22.05326 -21.59342 -20.87024 -20.37804 -19.83617 -17.87997 -17.29505 -16.22513 -15.34979 -15.14590 -14.87885 -14.66793 -14.64879 -14.20475 -13.97966 -13.77273 -13.70490 -13.45267 -13.37664 -12.89283 -12.68351 -12.60966 -12.36876 -12.12872 -12.09848 -11.74026 -11.66607 -11.51913 -11.29745 -11.17407 -10.97200 -10.78319 -10.74942 -10.65628 -10.59408 -10.21511 -10.12650 -10.07115 -9.37723 -8.86342 -8.32935 -8.21973 -7.30423 -6.41327 -4.07889 2.15226 2.20583 3.22493 3.26330 3.41034 4.12697 4.24291 4.43508 4.47774 4.57712 4.68218 4.84184 4.88145 5.00908 5.08801 5.11710 5.12762 5.22964 5.27075 5.33347 5.36901 5.43225 5.44744 5.51448 5.56417 5.68807 5.74022 5.77118 5.77932 5.81540 5.87673 5.93711 5.97234 6.01286 6.09016 6.13660 6.14262 6.16171 6.31712 6.36666 6.59850 6.80967 7.02615 7.18369 7.27672 7.31088 7.52603 7.63256 7.80781 8.04678 8.94185 9.57049 10.66407 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.002671 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.303692 B =10480.427986 C =11176.094704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.088 4.088 4 H 0.078 0.922 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.107 4.107 9 C 0.092 3.908 10 H 0.039 0.961 11 N -0.683 5.683 12 C 0.117 3.883 13 C -0.175 4.175 14 C -0.068 4.068 15 C -0.221 4.221 16 C 0.161 3.839 17 O -0.218 6.218 18 C -0.389 4.389 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.194 4.194 27 C -0.054 4.054 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.343 0.657 42 H 0.070 0.930 43 H 0.027 0.973 44 H 0.105 0.895 45 H 0.132 0.868 46 H 0.279 0.721 47 H 0.116 0.884 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 15.078 -18.014 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.107 4.107 4 H 0.097 0.903 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.158 4.158 8 C -0.145 4.145 9 C -0.017 4.017 10 H 0.057 0.943 11 N -0.317 5.317 12 C -0.011 4.011 13 C -0.176 4.176 14 C -0.087 4.087 15 C -0.240 4.240 16 C 0.109 3.891 17 O -0.123 6.123 18 C -0.465 4.465 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.213 4.213 27 C -0.073 4.073 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.164 0.836 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.123 0.877 45 H 0.149 0.851 46 H 0.089 0.911 47 H 0.134 0.866 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.352 15.524 -17.353 24.417 hybrid contribution 0.122 -0.759 0.082 0.774 sum -7.230 14.765 -17.271 23.845 Atomic orbital electron populations 1.21787 0.95636 1.01615 1.01815 1.21645 0.96291 0.96501 1.01950 1.21332 0.94867 0.95996 0.98515 0.90319 1.21601 1.00618 0.95616 0.97183 1.21543 0.95925 0.96737 1.01519 1.21545 0.95806 1.00382 0.98029 1.21529 1.00657 0.95040 0.97255 1.21526 0.94129 0.95198 0.90891 0.94276 1.60627 1.03744 1.35606 1.31737 1.20667 0.90138 0.96536 0.93769 1.19208 1.07631 0.94010 0.96740 1.20643 0.97962 0.93866 0.96240 1.21232 1.06964 1.01462 0.94376 1.19136 0.92300 0.91534 0.86141 1.83575 1.68286 1.28520 1.31930 1.20765 1.39692 0.84670 1.01354 0.87672 1.24466 0.96578 0.95299 0.97674 1.69648 1.45277 1.10579 1.26350 0.86179 0.80181 0.79641 0.80893 1.19871 1.20805 1.18354 1.20223 1.09439 0.92619 0.99025 1.20465 0.96656 0.98186 0.91988 0.92593 0.92676 0.92829 0.92231 0.91594 0.92210 0.91706 0.92322 0.91925 0.92336 0.92083 0.91306 0.92143 0.83584 0.91185 0.95514 0.87726 0.85061 0.91069 0.86599 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.15 0.36 -0.84 16 2 C -0.13 -1.11 5.27 -26.73 -0.14 -1.25 16 3 C -0.09 -0.78 1.85 -90.62 -0.17 -0.95 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 5 C -0.11 -0.85 4.96 -26.73 -0.13 -0.98 16 6 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 8 C -0.11 -1.02 5.43 -26.71 -0.14 -1.16 16 9 C 0.09 0.93 1.97 -67.69 -0.13 0.79 16 10 H 0.04 0.41 7.80 -51.93 -0.40 0.01 16 11 N -0.68 -8.35 6.30 -107.97 -0.68 -9.03 16 12 C 0.12 1.55 5.61 -4.98 -0.03 1.52 16 13 C -0.17 -2.87 5.40 -104.58 -0.56 -3.44 16 14 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 15 C -0.22 -4.77 9.17 -39.39 -0.36 -5.13 16 16 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 17 O -0.22 -5.80 8.59 0.04 0.00 -5.80 16 18 C -0.39 -11.03 9.95 30.89 0.31 -10.72 16 19 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.54 13.96 55.48 0.77 -24.77 16 22 Si 0.91 21.80 28.62 -169.99 -4.86 16.94 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.19 -3.88 9.99 -39.40 -0.39 -4.28 16 27 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.39 6.57 -51.93 -0.34 0.05 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.07 0.65 6.03 -51.93 -0.31 0.33 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.06 0.61 7.46 -51.93 -0.39 0.22 16 41 H 0.34 4.29 6.09 -39.29 -0.24 4.05 16 42 H 0.07 0.88 7.38 -51.93 -0.38 0.50 16 43 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 44 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 46 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 48 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -28.59 372.28 -10.04 -38.63 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.04 Total: 4.75 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.84 Total: -26.33 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.09 Total: -33.80 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: 0.00 Total: -5.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.59 -10.04 -38.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035257041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.557 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds