Wall clock time and date at job start Tue Mar 31 2020 10:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47660 * 2 1 4 4 H 1.09003 * 109.47283 * 305.00716 * 3 2 1 5 5 C 1.53007 * 109.46595 * 65.00109 * 3 2 1 6 6 C 1.53001 * 109.47125 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47013 * 300.00518 * 6 5 3 8 8 C 1.52998 * 109.47648 * 59.99941 * 7 6 5 9 9 C 1.52997 * 109.47582 * 185.00245 * 3 2 1 10 10 H 1.09003 * 109.47096 * 299.99977 * 9 3 2 11 11 N 1.46896 * 109.47222 * 60.00288 * 9 3 2 12 12 C 1.46902 * 111.00238 * 205.00167 * 11 9 3 13 13 C 1.50698 * 109.47161 * 179.97438 * 12 11 9 14 14 C 1.38320 * 119.96121 * 90.00058 * 13 12 11 15 15 C 1.38289 * 120.13589 * 179.97438 * 14 13 12 16 16 C 1.38118 * 120.06668 * 0.02817 * 15 14 13 17 17 C 1.38861 * 119.93202 * 359.97194 * 16 15 14 18 18 O 1.35747 * 120.06673 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00427 * 5.53123 * 18 17 16 20 20 H 1.07999 * 119.99876 * 354.94936 * 19 18 17 21 21 C 1.38655 * 120.00538 * 174.66997 * 19 18 17 22 22 N 1.31564 * 119.99356 * 0.27705 * 21 19 18 23 23 Si 1.86802 * 120.00366 * 180.27896 * 21 19 18 24 24 H 1.48495 * 109.47096 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47315 * 120.00232 * 23 21 19 26 26 H 1.48503 * 109.46684 * 240.00050 * 23 21 19 27 27 C 1.38075 * 119.96798 * 270.25022 * 13 12 11 28 28 H 1.08999 * 109.47180 * 59.99450 * 1 2 3 29 29 H 1.08998 * 109.47457 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46860 * 299.99662 * 1 2 3 31 31 H 1.09000 * 109.46860 * 240.00338 * 2 1 3 32 32 H 1.09006 * 109.47545 * 120.00514 * 2 1 3 33 33 H 1.09000 * 109.47194 * 300.00033 * 5 3 2 34 34 H 1.09003 * 109.46809 * 60.00317 * 5 3 2 35 35 H 1.09003 * 109.46622 * 60.00080 * 6 5 3 36 36 H 1.08990 * 109.47149 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.46833 * 179.97438 * 7 6 5 38 38 H 1.08989 * 109.47125 * 299.99266 * 7 6 5 39 39 H 1.08992 * 109.47428 * 179.97438 * 8 7 6 40 40 H 1.09003 * 109.47420 * 59.99561 * 8 7 6 41 41 H 1.00901 * 110.99742 * 328.95065 * 11 9 3 42 42 H 1.09003 * 109.47117 * 59.99580 * 12 11 9 43 43 H 1.09002 * 109.47026 * 299.99947 * 12 11 9 44 44 H 1.07991 * 119.93587 * 359.97438 * 14 13 12 45 45 H 1.07999 * 119.96372 * 179.97438 * 15 14 13 46 46 H 1.08004 * 120.03575 * 179.97438 * 16 15 14 47 47 H 0.97002 * 119.99416 * 180.02562 * 22 21 19 48 48 H 1.08008 * 120.03350 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1264 1.3075 6 6 2.1448 3.5691 1.3073 7 6 3.6696 3.5714 1.1812 8 6 4.0743 2.8875 -0.1262 9 6 3.5648 1.4443 -0.1258 10 1 3.9995 0.9052 0.7160 11 7 3.9534 0.7876 -1.3810 12 6 5.3135 0.2401 -1.2897 13 6 5.6759 -0.4247 -2.5926 14 6 6.2866 0.3070 -3.5951 15 6 6.6212 -0.2995 -4.7920 16 6 6.3458 -1.6385 -4.9900 17 6 5.7329 -2.3757 -3.9855 18 8 5.4606 -3.6917 -4.1773 19 6 5.9126 -4.2504 -5.3181 20 1 6.3922 -3.6371 -6.0667 21 6 5.7669 -5.6132 -5.5279 22 7 5.1827 -6.3603 -4.6160 23 14 6.4002 -6.3886 -7.1050 24 1 7.0113 -5.3404 -7.9612 25 1 7.4199 -7.4168 -6.7764 26 1 5.2720 -7.0248 -7.8314 27 6 5.3935 -1.7623 -2.7864 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5490 2.1252 1.3970 34 1 2.0700 1.5873 2.1492 35 1 1.7098 4.1079 0.4655 36 1 1.8561 4.0565 2.2385 37 1 4.0325 4.5993 1.1806 38 1 4.1046 3.0327 2.0229 39 1 5.1605 2.8896 -0.2163 40 1 3.6393 3.4263 -0.9680 41 1 3.2909 0.0697 -1.6337 42 1 5.3568 -0.4927 -0.4839 43 1 6.0171 1.0471 -1.0851 44 1 6.5025 1.3541 -3.4429 45 1 7.0975 0.2745 -5.5730 46 1 6.6070 -2.1116 -5.9251 47 1 5.0812 -7.3138 -4.7625 48 1 4.9126 -2.3321 -2.0049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037294487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:16 Heat of formation + Delta-G solvation = -49.742593 kcal Electronic energy + Delta-G solvation = -24607.488945 eV Core-core repulsion = 21239.782938 eV Total energy + Delta-G solvation = -3367.706007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.87655 -40.28323 -38.44093 -35.88938 -34.86610 -34.28500 -32.36592 -30.81172 -30.15050 -29.12473 -27.38025 -25.80998 -24.85129 -23.20629 -22.56164 -22.10088 -21.52118 -20.65493 -19.48300 -18.80504 -17.06252 -16.74546 -16.40756 -16.14292 -16.04787 -15.69714 -15.58713 -15.41412 -15.24722 -14.79837 -14.45332 -14.26344 -14.11076 -14.05704 -13.69812 -13.43076 -13.25378 -13.09074 -12.94278 -12.49803 -12.46738 -12.37869 -12.26456 -12.20097 -12.15413 -12.05050 -11.87799 -11.61873 -11.33494 -11.20450 -10.92988 -10.83017 -10.78519 -9.72231 -9.31054 -8.98061 -8.47498 -6.15821 0.51886 0.75823 1.34446 1.42885 1.52848 2.17168 2.78590 3.09524 3.33126 3.52045 3.71565 3.78600 3.91085 4.01147 4.11074 4.20215 4.31463 4.36164 4.38391 4.43622 4.47059 4.51569 4.60001 4.61624 4.66764 4.68884 4.74113 4.76995 4.85005 4.95208 5.02835 5.06875 5.13435 5.13743 5.17371 5.26797 5.30109 5.32135 5.35796 5.38421 5.42108 5.48660 5.61659 5.65774 5.73455 5.80501 6.02567 6.13555 6.25160 6.42072 6.97571 7.78859 8.76150 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.002890 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.254336 B = 9686.492239 C =10708.407056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.081 4.081 4 H 0.071 0.929 5 C -0.109 4.109 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.103 4.103 9 C 0.092 3.908 10 H 0.038 0.962 11 N -0.686 5.686 12 C 0.112 3.888 13 C -0.037 4.037 14 C -0.170 4.170 15 C -0.072 4.072 16 C -0.244 4.244 17 C 0.114 3.886 18 O -0.234 6.234 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.019 2.981 24 H -0.251 1.251 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.197 4.197 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.339 0.661 42 H 0.032 0.968 43 H 0.095 0.905 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.272 0.728 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 19.874 10.507 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.100 4.100 4 H 0.090 0.910 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.141 4.141 9 C -0.017 4.017 10 H 0.056 0.944 11 N -0.319 5.319 12 C -0.016 4.016 13 C -0.037 4.037 14 C -0.189 4.189 15 C -0.090 4.090 16 C -0.264 4.264 17 C 0.064 3.936 18 O -0.141 6.141 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.217 4.217 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.160 0.840 42 H 0.050 0.950 43 H 0.114 0.886 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.136 0.864 47 H 0.081 0.919 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.501 20.092 10.389 23.063 hybrid contribution 0.079 -1.886 -0.248 1.904 sum -4.422 18.206 10.141 21.304 Atomic orbital electron populations 1.21762 0.94731 1.01683 1.02378 1.21643 0.97150 0.96658 1.01103 1.21271 0.93815 0.95677 0.99262 0.91026 1.21588 1.01247 0.95825 0.96033 1.21537 0.95458 0.96301 1.02221 1.21527 0.96238 1.00733 0.96933 1.21503 1.00365 0.94134 0.98112 1.21623 0.95108 0.95504 0.89447 0.94401 1.60631 1.02704 1.35137 1.33399 1.20808 0.91839 0.97271 0.91701 1.19577 0.96428 0.91100 0.96642 1.20931 1.04177 1.00337 0.93461 1.21159 0.97115 0.92819 0.97928 1.21304 1.08493 0.96438 1.00145 1.19846 0.94121 0.84868 0.94763 1.83936 1.69247 1.19715 1.41209 1.21852 1.39565 0.92732 0.94679 0.88186 1.26590 0.96924 0.95323 1.03254 1.70198 1.42651 1.06739 1.36441 0.84527 0.78151 0.78368 0.75146 1.17478 1.19327 1.19314 1.20215 1.09556 0.95968 0.95931 0.92714 0.93145 0.91250 0.93433 0.92297 0.90797 0.92116 0.91997 0.90948 0.91030 0.92126 0.92371 0.91978 0.84037 0.94980 0.88648 0.83879 0.83733 0.86447 0.91890 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.67 71.98 0.70 -1.90 16 2 C -0.13 -2.56 5.27 30.59 0.16 -2.40 16 3 C -0.08 -1.48 1.85 -10.79 -0.02 -1.50 16 4 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 5 C -0.11 -1.57 4.96 30.60 0.15 -1.41 16 6 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 7 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 8 C -0.10 -1.83 5.43 30.61 0.17 -1.67 16 9 C 0.09 1.88 1.97 44.93 0.09 1.97 16 10 H 0.04 0.81 7.80 -2.39 -0.02 0.79 16 11 N -0.69 -17.42 6.30 -495.48 -3.12 -20.54 16 12 C 0.11 3.06 5.61 85.56 0.48 3.54 16 13 C -0.04 -1.28 5.39 -19.88 -0.11 -1.39 16 14 C -0.17 -5.51 9.70 22.30 0.22 -5.30 16 15 C -0.07 -2.55 10.04 22.25 0.22 -2.32 16 16 C -0.24 -10.92 9.17 22.39 0.21 -10.71 16 17 C 0.11 5.82 6.65 22.58 0.15 5.97 16 18 O -0.23 -14.39 9.76 -22.69 -0.22 -14.61 16 19 C -0.41 -24.42 9.49 67.92 0.64 -23.78 16 20 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 21 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 22 N -0.92 -57.30 13.67 21.61 0.30 -57.00 16 23 Si 1.02 43.46 29.55 68.60 2.03 45.48 16 24 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 C -0.20 -8.63 9.65 22.39 0.22 -8.42 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.00 6.56 -2.39 -0.02 0.99 16 31 H 0.05 1.13 6.03 -2.39 -0.01 1.12 16 32 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.07 0.95 6.57 -2.39 -0.02 0.93 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.06 7.46 -2.39 -0.02 1.04 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.34 9.48 6.09 -89.69 -0.55 8.94 16 42 H 0.03 0.89 8.00 -2.39 -0.02 0.87 16 43 H 0.10 2.25 7.38 -2.39 -0.02 2.23 16 44 H 0.14 3.68 8.06 -2.92 -0.02 3.66 16 45 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 46 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -68.66 373.41 3.47 -65.19 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.39 Total: 34.47 kcal Atomic # 6 Polarization: -57.09 SS G_CDS: 4.10 Total: -52.99 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -2.82 Total: -77.55 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.61 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.66 3.47 -65.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037294487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.446 kcal (2) G-P(sol) polarization free energy of solvation -68.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds