Wall clock time and date at job start Tue Mar 31 2020 10:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 H 1.08994 * 109.47206 * 55.00493 * 3 2 1 5 5 C 1.53001 * 109.47248 * 295.00027 * 3 2 1 6 6 C 1.53005 * 109.47122 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46772 * 60.00002 * 6 5 3 8 8 C 1.53005 * 109.47610 * 300.00046 * 7 6 5 9 9 C 1.53001 * 109.46874 * 175.00342 * 3 2 1 10 10 H 1.08999 * 109.47484 * 59.99929 * 9 3 2 11 11 N 1.46900 * 109.47314 * 299.99987 * 9 3 2 12 12 C 1.46895 * 111.00322 * 155.00002 * 11 9 3 13 13 C 1.50698 * 109.47180 * 180.02562 * 12 11 9 14 14 C 1.38325 * 119.96491 * 90.00055 * 13 12 11 15 15 C 1.38283 * 120.13624 * 179.97438 * 14 13 12 16 16 C 1.38129 * 120.07150 * 0.02562 * 15 14 13 17 17 C 1.38856 * 119.92490 * 359.97438 * 16 15 14 18 18 O 1.35750 * 120.06358 * 179.97438 * 17 16 15 19 19 C 1.34831 * 117.00127 * 354.46102 * 18 17 16 20 20 H 1.08000 * 120.00231 * 5.05691 * 19 18 17 21 21 C 1.38653 * 119.99940 * 185.05488 * 19 18 17 22 22 N 1.31558 * 120.00321 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00073 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46938 * 89.99897 * 23 21 19 25 25 H 1.48491 * 109.47441 * 210.00072 * 23 21 19 26 26 H 1.48505 * 109.47110 * 330.00441 * 23 21 19 27 27 C 1.38077 * 119.96738 * 269.72847 * 13 12 11 28 28 H 1.08989 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46767 * 300.00168 * 1 2 3 30 30 H 1.09006 * 109.47162 * 59.99033 * 1 2 3 31 31 H 1.09006 * 109.46702 * 240.00255 * 2 1 3 32 32 H 1.08993 * 109.47156 * 120.00359 * 2 1 3 33 33 H 1.08995 * 109.46801 * 60.00383 * 5 3 2 34 34 H 1.08999 * 109.47077 * 300.00051 * 5 3 2 35 35 H 1.09000 * 109.46994 * 300.00755 * 6 5 3 36 36 H 1.08994 * 109.47021 * 179.97438 * 6 5 3 37 37 H 1.09002 * 109.46848 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.47149 * 60.00455 * 7 6 5 39 39 H 1.08999 * 109.46793 * 300.00254 * 8 7 6 40 40 H 1.08995 * 109.47115 * 179.97438 * 8 7 6 41 41 H 1.00905 * 110.99923 * 31.04444 * 11 9 3 42 42 H 1.09001 * 109.47321 * 300.00198 * 12 11 9 43 43 H 1.08997 * 109.47173 * 60.00517 * 12 11 9 44 44 H 1.07990 * 119.93258 * 0.02612 * 14 13 12 45 45 H 1.08003 * 119.96469 * 179.97438 * 15 14 13 46 46 H 1.07993 * 120.03461 * 179.97438 * 16 15 14 47 47 H 0.96997 * 119.99739 * 179.97438 * 22 21 19 48 48 H 1.08001 * 120.03382 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5693 -1.3070 7 6 3.6696 3.5715 -1.1810 8 6 4.0744 2.8874 0.1263 9 6 3.5649 1.4442 0.1256 10 1 3.9995 0.9051 -0.7162 11 7 3.9536 0.7873 1.3808 12 6 5.3136 0.2398 1.2893 13 6 5.6761 -0.4251 2.5922 14 6 5.3978 -1.7664 2.7842 15 6 5.7294 -2.3803 3.9781 16 6 6.3394 -1.6552 4.9832 17 6 6.6200 -0.3086 4.7934 18 8 7.2190 0.4068 5.7794 19 6 7.4112 -0.2179 6.9587 20 1 7.1683 -1.2653 7.0609 21 6 7.9207 0.4842 8.0402 22 7 8.2162 1.7602 7.9160 23 14 8.1864 -0.3811 9.6743 24 1 9.5571 -0.9508 9.7156 25 1 8.0216 0.5930 10.7829 26 1 7.1916 -1.4736 9.8233 27 6 6.2908 0.3037 3.5909 28 1 -0.3633 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 0.5490 2.1253 -1.3968 34 1 2.0699 1.5875 -2.1492 35 1 1.7099 4.1080 -0.4652 36 1 1.8569 4.0564 -2.2386 37 1 4.0326 4.5993 -1.1812 38 1 4.1046 3.0328 -2.0229 39 1 3.6395 3.4262 0.9681 40 1 5.1607 2.8886 0.2158 41 1 3.2910 0.0695 1.6336 42 1 5.3568 -0.4929 0.4835 43 1 6.0171 1.0468 1.0848 44 1 4.9213 -2.3356 1.9998 45 1 5.5104 -3.4276 4.1253 46 1 6.5977 -2.1351 5.9155 47 1 8.5724 2.2514 8.6728 48 1 6.5122 1.3498 3.4386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037294488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:20 Heat of formation + Delta-G solvation = -32.941013 kcal Electronic energy + Delta-G solvation = -24574.358881 eV Core-core repulsion = 21207.381445 eV Total energy + Delta-G solvation = -3366.977436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.63004 -38.91430 -36.75898 -34.74121 -34.12651 -32.25031 -31.02493 -29.46813 -29.08765 -28.00152 -25.45050 -24.50598 -24.05451 -21.64683 -21.53188 -20.82794 -20.53014 -19.82179 -17.64774 -16.93138 -16.05853 -15.32712 -15.13035 -14.87492 -14.72946 -14.51760 -14.32236 -14.17971 -13.67749 -13.57148 -13.42972 -13.20259 -12.98928 -12.63705 -12.43769 -12.25794 -11.94879 -11.75171 -11.61866 -11.55400 -11.45421 -11.25006 -11.12196 -10.92092 -10.78502 -10.71881 -10.59266 -10.52102 -10.42467 -10.14613 -10.01975 -9.29116 -8.80962 -8.28406 -8.01448 -7.19323 -6.40753 -3.99796 2.16380 2.41053 3.14914 3.15949 3.20739 3.99419 4.18654 4.48675 4.53393 4.64874 4.73423 4.89598 5.05058 5.09305 5.13838 5.17142 5.21027 5.26867 5.37139 5.39290 5.46844 5.47461 5.55278 5.59243 5.65192 5.73589 5.78161 5.81733 5.84710 5.91356 5.96333 5.99792 6.02637 6.07794 6.13870 6.20114 6.21651 6.24325 6.39027 6.42326 6.71307 6.96729 7.10980 7.19356 7.34971 7.38970 7.48304 7.58091 7.86696 8.04296 9.04916 9.76099 10.77431 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002817 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.410898 B = 9937.310142 C =10552.324857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.089 4.089 4 H 0.079 0.921 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.109 4.109 9 C 0.094 3.906 10 H 0.040 0.960 11 N -0.680 5.680 12 C 0.107 3.893 13 C -0.047 4.047 14 C -0.208 4.208 15 C -0.076 4.076 16 C -0.233 4.233 17 C 0.152 3.848 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.166 4.166 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.343 0.657 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.125 0.875 47 H 0.269 0.731 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.272 -1.263 -17.574 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.108 4.108 4 H 0.098 0.902 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.147 4.147 9 C -0.016 4.016 10 H 0.058 0.942 11 N -0.314 5.314 12 C -0.021 4.021 13 C -0.048 4.048 14 C -0.228 4.228 15 C -0.094 4.094 16 C -0.253 4.253 17 C 0.099 3.901 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.186 4.186 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.164 0.836 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.124 0.876 46 H 0.143 0.857 47 H 0.079 0.921 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.888 -0.261 -17.107 20.833 hybrid contribution 0.040 -1.340 0.357 1.388 sum -11.848 -1.601 -16.750 20.579 Atomic orbital electron populations 1.21787 0.95673 1.01489 1.01889 1.21643 0.96238 0.96594 1.01863 1.21338 0.94880 0.95939 0.98617 0.90219 1.21594 1.00545 0.95692 0.97106 1.21547 0.96010 0.96667 1.01531 1.21544 0.95713 1.00486 0.97979 1.21550 1.00908 0.94919 0.97330 1.21527 0.94101 0.95318 0.90623 0.94249 1.60534 1.03346 1.35464 1.32012 1.20825 0.90667 0.96983 0.93615 1.19171 0.97980 0.93200 0.94412 1.20411 1.09318 0.94668 0.98370 1.20683 0.97242 0.98293 0.93194 1.21174 1.08248 0.94775 1.01078 1.19359 0.90667 0.90430 0.89661 1.83982 1.66016 1.38776 1.19465 1.21310 1.44430 0.95419 0.85587 0.89161 1.25274 0.96612 0.95679 0.98955 1.70042 1.40463 1.07537 1.31785 0.85728 0.78985 0.78688 0.80114 1.19931 1.20271 1.19235 1.20018 1.06270 0.99739 0.92539 0.92935 0.92567 0.92647 0.92262 0.91640 0.91745 0.92240 0.91870 0.92334 0.91996 0.92376 0.91117 0.91955 0.83603 0.95080 0.90601 0.88168 0.87636 0.85700 0.92081 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.13 -1.11 5.27 -26.73 -0.14 -1.26 16 3 C -0.09 -0.84 1.85 -90.62 -0.17 -1.01 16 4 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 5 C -0.11 -0.90 4.96 -26.73 -0.13 -1.03 16 6 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 7 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 8 C -0.11 -1.21 5.43 -26.70 -0.14 -1.35 16 9 C 0.09 1.04 1.98 -67.68 -0.13 0.90 16 10 H 0.04 0.44 7.80 -51.93 -0.40 0.03 16 11 N -0.68 -9.17 6.30 -107.97 -0.68 -9.84 16 12 C 0.11 1.57 5.61 -4.98 -0.03 1.54 16 13 C -0.05 -0.85 5.39 -104.65 -0.56 -1.42 16 14 C -0.21 -3.64 9.70 -39.53 -0.38 -4.02 16 15 C -0.08 -1.42 10.04 -39.60 -0.40 -1.82 16 16 C -0.23 -5.18 9.17 -39.39 -0.36 -5.54 16 17 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 18 O -0.18 -5.20 9.76 0.04 0.00 -5.20 16 19 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 23 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 27 C -0.17 -3.61 9.64 -39.40 -0.38 -3.99 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.39 6.57 -51.93 -0.34 0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.64 6.03 -51.93 -0.31 0.33 16 33 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.74 7.46 -51.93 -0.39 0.36 16 41 H 0.34 4.50 6.09 -39.29 -0.24 4.26 16 42 H 0.03 0.41 8.00 -51.93 -0.42 0.00 16 43 H 0.08 1.11 7.38 -51.93 -0.38 0.73 16 44 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 46 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -30.08 373.40 -10.20 -40.27 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.03 Total: 6.80 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.85 Total: -28.51 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.08 Total: -34.75 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.08 -10.20 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037294488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.332 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds